Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00897

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00894 and CCNA_00895 are separated by 10 nucleotidesCCNA_00895 and CCNA_00896 are separated by 7 nucleotidesCCNA_00896 and CCNA_00897 are separated by 92 nucleotidesCCNA_00897 and CCNA_00898 are separated by 75 nucleotidesCCNA_00898 and CCNA_00899 are separated by 3 nucleotides CCNA_00894: CCNA_00894 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, at 973,984 to 975,135 _00894 CCNA_00895: CCNA_00895 - hypothetical protein, at 975,146 to 975,541 _00895 CCNA_00896: CCNA_00896 - hypothetical protein, at 975,549 to 975,920 _00896 CCNA_00897: CCNA_00897 - hypothetical protein, at 976,013 to 976,177 _00897 CCNA_00898: CCNA_00898 - ribosomal large subunit pseudouridine synthase F, at 976,253 to 977,020 _00898 CCNA_00899: CCNA_00899 - bacterial peptide chain Release factor 1 (RF-1), at 977,024 to 978,094 _00899 Position (kb) 976 977Strain fitness (log2 ratio) -1 0 1at 975.102 kb on + strandat 975.102 kb on + strandat 975.125 kb on + strandat 975.158 kb on - strandat 975.168 kb on - strandat 975.173 kb on - strandat 975.196 kb on + strand, within CCNA_00895at 975.238 kb on - strand, within CCNA_00895at 975.269 kb on + strand, within CCNA_00895at 975.277 kb on - strand, within CCNA_00895at 975.279 kb on + strand, within CCNA_00895at 975.374 kb on + strand, within CCNA_00895at 975.432 kb on - strand, within CCNA_00895at 975.433 kb on - strand, within CCNA_00895at 975.439 kb on - strand, within CCNA_00895at 975.481 kb on - strand, within CCNA_00895at 975.501 kb on + strand, within CCNA_00895at 975.501 kb on + strand, within CCNA_00895at 975.509 kb on - strandat 975.535 kb on + strandat 975.543 kb on - strandat 975.543 kb on - strandat 975.615 kb on + strand, within CCNA_00896at 975.672 kb on - strand, within CCNA_00896at 975.701 kb on - strand, within CCNA_00896at 975.718 kb on - strand, within CCNA_00896at 975.971 kb on - strandat 976.135 kb on - strand, within CCNA_00897at 976.135 kb on - strand, within CCNA_00897at 976.137 kb on + strand, within CCNA_00897at 976.173 kb on + strandat 976.180 kb on - strandat 976.229 kb on - strandat 976.234 kb on + strandat 976.259 kb on - strandat 976.324 kb on + strandat 976.324 kb on + strandat 976.324 kb on + strandat 976.324 kb on + strandat 976.324 kb on + strandat 976.328 kb on - strandat 976.332 kb on - strand, within CCNA_00898at 976.349 kb on + strand, within CCNA_00898at 976.370 kb on - strand, within CCNA_00898at 976.420 kb on + strand, within CCNA_00898at 976.420 kb on + strand, within CCNA_00898at 976.428 kb on - strand, within CCNA_00898at 976.492 kb on + strand, within CCNA_00898at 976.494 kb on - strand, within CCNA_00898at 976.500 kb on - strand, within CCNA_00898at 976.507 kb on + strand, within CCNA_00898at 976.570 kb on + strand, within CCNA_00898at 976.571 kb on - strand, within CCNA_00898at 976.626 kb on - strand, within CCNA_00898at 976.748 kb on + strand, within CCNA_00898at 976.748 kb on + strand, within CCNA_00898at 976.756 kb on - strand, within CCNA_00898at 976.799 kb on + strand, within CCNA_00898at 976.807 kb on - strand, within CCNA_00898at 976.807 kb on - strand, within CCNA_00898at 976.817 kb on - strand, within CCNA_00898at 976.849 kb on - strand, within CCNA_00898at 976.855 kb on - strand, within CCNA_00898at 976.858 kb on + strand, within CCNA_00898at 976.903 kb on + strand, within CCNA_00898at 976.911 kb on - strand, within CCNA_00898at 976.914 kb on + strand, within CCNA_00898at 976.955 kb on + strandat 976.996 kb on + strandat 976.996 kb on + strandat 977.004 kb on - strandat 977.004 kb on - strandat 977.015 kb on + strandat 977.021 kb on + strandat 977.023 kb on - strandat 977.026 kb on + strandat 977.034 kb on - strandat 977.034 kb on - strandat 977.038 kb on + strandat 977.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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975,102 + +0.6
975,102 + +0.4
975,125 + -0.0
975,158 - -0.1
975,168 - +0.1
975,173 - +0.5
975,196 + CCNA_00895 0.13 +0.1
975,238 - CCNA_00895 0.23 +1.1
975,269 + CCNA_00895 0.31 -0.2
975,277 - CCNA_00895 0.33 -0.4
975,279 + CCNA_00895 0.34 +0.1
975,374 + CCNA_00895 0.58 +0.1
975,432 - CCNA_00895 0.72 +0.6
975,433 - CCNA_00895 0.72 -1.4
975,439 - CCNA_00895 0.74 +1.2
975,481 - CCNA_00895 0.85 -0.4
975,501 + CCNA_00895 0.90 -0.1
975,501 + CCNA_00895 0.90 +0.3
975,509 - +0.1
975,535 + -0.3
975,543 - +0.3
975,543 - -1.1
975,615 + CCNA_00896 0.18 +0.4
975,672 - CCNA_00896 0.33 -0.6
975,701 - CCNA_00896 0.41 +0.4
975,718 - CCNA_00896 0.45 +1.6
975,971 - -1.4
976,135 - CCNA_00897 0.74 +0.1
976,135 - CCNA_00897 0.74 +0.4
976,137 + CCNA_00897 0.75 -0.3
976,173 + -0.1
976,180 - +0.7
976,229 - +0.8
976,234 + -0.2
976,259 - +0.1
976,324 + -0.2
976,324 + +0.7
976,324 + +0.1
976,324 + -1.1
976,324 + -0.7
976,328 - +0.3
976,332 - CCNA_00898 0.10 +0.0
976,349 + CCNA_00898 0.12 +0.5
976,370 - CCNA_00898 0.15 -0.4
976,420 + CCNA_00898 0.22 -0.6
976,420 + CCNA_00898 0.22 -0.2
976,428 - CCNA_00898 0.23 +0.0
976,492 + CCNA_00898 0.31 +0.7
976,494 - CCNA_00898 0.31 +0.3
976,500 - CCNA_00898 0.32 +0.0
976,507 + CCNA_00898 0.33 -0.2
976,570 + CCNA_00898 0.41 -0.5
976,571 - CCNA_00898 0.41 +0.7
976,626 - CCNA_00898 0.49 +0.1
976,748 + CCNA_00898 0.64 -0.1
976,748 + CCNA_00898 0.64 -0.5
976,756 - CCNA_00898 0.65 +0.3
976,799 + CCNA_00898 0.71 -0.3
976,807 - CCNA_00898 0.72 +0.2
976,807 - CCNA_00898 0.72 +0.2
976,817 - CCNA_00898 0.73 +0.4
976,849 - CCNA_00898 0.78 -0.2
976,855 - CCNA_00898 0.78 -0.4
976,858 + CCNA_00898 0.79 -0.3
976,903 + CCNA_00898 0.85 -0.5
976,911 - CCNA_00898 0.86 +0.6
976,914 + CCNA_00898 0.86 +1.4
976,955 + -0.1
976,996 + +0.7
976,996 + +0.2
977,004 - +0.3
977,004 - +0.0
977,015 + -0.3
977,021 + -0.5
977,023 - +0.2
977,026 + +0.1
977,034 - +0.2
977,034 - +0.2
977,038 + -0.0
977,038 + +0.8

Or see this region's nucleotide sequence