Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00780 and CCNA_00781 are separated by 151 nucleotides CCNA_00781 and CCNA_R0015 are separated by 109 nucleotides CCNA_R0015 and CCNA_00782 are separated by 110 nucleotides CCNA_00782 and CCNA_00783 are separated by 341 nucleotides
CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686
_00780
CCNA_00781: CCNA_00781 - two-component receiver protein CpdR, at 841,838 to 842,194
_00781
CCNA_R0015: CCNA_R0015 - tRNA-Val, at 842,304 to 842,378
_R0015
CCNA_00782: CCNA_00782 - aminobenzoyl-glutamate transport protein, at 842,489 to 844,108
_00782
CCNA_00783: CCNA_00783 - secreted protease precursor sapA, at 844,450 to 846,426
_00783
Position (kb) 842
843
844
845 Strain fitness (log2 ratio) -2
-1
0
1
2 at 841.517 kb on + strand, within CCNA_00780 at 841.524 kb on + strand, within CCNA_00780 at 841.563 kb on - strand, within CCNA_00780 at 841.569 kb on - strand, within CCNA_00780 at 841.578 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.596 kb on - strand at 841.631 kb on - strand at 841.646 kb on + strand at 841.757 kb on + strand at 841.759 kb on + strand at 841.797 kb on - strand at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.924 kb on + strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.957 kb on - strand, within CCNA_00781 at 842.013 kb on + strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.046 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.461 kb on + strand at 842.500 kb on - strand at 842.522 kb on - strand at 842.557 kb on - strand at 842.559 kb on + strand at 842.567 kb on - strand at 842.567 kb on - strand at 842.579 kb on - strand at 842.604 kb on + strand at 842.604 kb on + strand at 842.604 kb on + strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.614 kb on + strand at 842.614 kb on + strand at 842.614 kb on + strand at 842.622 kb on - strand at 842.633 kb on + strand at 842.720 kb on + strand, within CCNA_00782 at 842.720 kb on + strand, within CCNA_00782 at 842.721 kb on - strand, within CCNA_00782 at 842.728 kb on - strand, within CCNA_00782 at 842.763 kb on + strand, within CCNA_00782 at 842.793 kb on + strand, within CCNA_00782 at 842.805 kb on - strand, within CCNA_00782 at 842.810 kb on + strand, within CCNA_00782 at 842.840 kb on + strand, within CCNA_00782 at 842.840 kb on + strand, within CCNA_00782 at 842.848 kb on - strand, within CCNA_00782 at 842.858 kb on + strand, within CCNA_00782 at 842.882 kb on + strand, within CCNA_00782 at 842.995 kb on + strand, within CCNA_00782 at 843.029 kb on - strand, within CCNA_00782 at 843.054 kb on + strand, within CCNA_00782 at 843.132 kb on + strand, within CCNA_00782 at 843.132 kb on + strand, within CCNA_00782 at 843.140 kb on - strand, within CCNA_00782 at 843.140 kb on - strand, within CCNA_00782 at 843.154 kb on - strand, within CCNA_00782 at 843.154 kb on - strand, within CCNA_00782 at 843.162 kb on + strand, within CCNA_00782 at 843.203 kb on + strand, within CCNA_00782 at 843.204 kb on - strand, within CCNA_00782 at 843.233 kb on - strand, within CCNA_00782 at 843.238 kb on - strand, within CCNA_00782 at 843.243 kb on - strand, within CCNA_00782 at 843.262 kb on - strand, within CCNA_00782 at 843.303 kb on + strand, within CCNA_00782 at 843.392 kb on - strand, within CCNA_00782 at 843.394 kb on - strand, within CCNA_00782 at 843.394 kb on - strand, within CCNA_00782 at 843.404 kb on + strand, within CCNA_00782 at 843.414 kb on + strand, within CCNA_00782 at 843.495 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.596 kb on + strand, within CCNA_00782 at 843.599 kb on - strand, within CCNA_00782 at 843.599 kb on - strand, within CCNA_00782 at 843.599 kb on - strand, within CCNA_00782 at 843.604 kb on - strand, within CCNA_00782 at 843.647 kb on + strand, within CCNA_00782 at 843.655 kb on - strand, within CCNA_00782 at 843.700 kb on - strand, within CCNA_00782 at 843.726 kb on + strand, within CCNA_00782 at 843.727 kb on - strand, within CCNA_00782 at 843.727 kb on - strand, within CCNA_00782 at 843.731 kb on + strand, within CCNA_00782 at 843.731 kb on + strand, within CCNA_00782 at 843.736 kb on + strand, within CCNA_00782 at 843.744 kb on - strand, within CCNA_00782 at 843.744 kb on - strand, within CCNA_00782 at 843.760 kb on + strand, within CCNA_00782 at 843.766 kb on + strand, within CCNA_00782 at 843.791 kb on - strand, within CCNA_00782 at 843.801 kb on - strand, within CCNA_00782 at 843.801 kb on - strand, within CCNA_00782 at 843.803 kb on + strand, within CCNA_00782 at 843.811 kb on - strand, within CCNA_00782 at 843.844 kb on - strand, within CCNA_00782 at 843.875 kb on + strand, within CCNA_00782 at 843.875 kb on + strand, within CCNA_00782 at 843.875 kb on + strand, within CCNA_00782 at 843.883 kb on - strand, within CCNA_00782 at 843.883 kb on - strand, within CCNA_00782 at 843.905 kb on + strand, within CCNA_00782 at 843.937 kb on + strand, within CCNA_00782 at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.953 kb on + strand at 843.953 kb on + strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.956 kb on - strand at 843.960 kb on - strand at 843.990 kb on - strand at 843.991 kb on - strand at 844.012 kb on - strand at 844.034 kb on - strand at 844.052 kb on + strand at 844.052 kb on + strand at 844.069 kb on - strand at 844.152 kb on + strand at 844.157 kb on + strand at 844.160 kb on - strand at 844.174 kb on + strand at 844.174 kb on + strand at 844.182 kb on - strand at 844.182 kb on - strand at 844.206 kb on + strand at 844.206 kb on + strand at 844.234 kb on + strand at 844.242 kb on - strand at 844.288 kb on + strand at 844.296 kb on - strand at 844.333 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.417 kb on + strand at 844.417 kb on + strand at 844.438 kb on + strand at 844.459 kb on + strand at 844.486 kb on + strand at 844.486 kb on + strand at 844.486 kb on + strand at 844.494 kb on - strand at 844.494 kb on - strand at 844.518 kb on - strand at 844.568 kb on + strand at 844.594 kb on + strand at 844.597 kb on - strand at 844.633 kb on + strand at 844.634 kb on + strand at 844.664 kb on - strand, within CCNA_00783 at 844.682 kb on + strand, within CCNA_00783 at 844.686 kb on + strand, within CCNA_00783 at 844.707 kb on + strand, within CCNA_00783 at 844.707 kb on + strand, within CCNA_00783 at 844.707 kb on + strand, within CCNA_00783 at 844.774 kb on + strand, within CCNA_00783 at 844.804 kb on - strand, within CCNA_00783 at 844.846 kb on - strand, within CCNA_00783 at 844.859 kb on + strand, within CCNA_00783 at 844.859 kb on + strand, within CCNA_00783 at 844.862 kb on + strand, within CCNA_00783 at 844.864 kb on + strand, within CCNA_00783 at 844.873 kb on - strand, within CCNA_00783 at 844.892 kb on + strand, within CCNA_00783 at 844.945 kb on - strand, within CCNA_00783 at 844.985 kb on + strand, within CCNA_00783 at 844.985 kb on + strand, within CCNA_00783 at 844.987 kb on + strand, within CCNA_00783 at 844.993 kb on - strand, within CCNA_00783 at 845.019 kb on - strand, within CCNA_00783 at 845.048 kb on + strand, within CCNA_00783 at 845.048 kb on + strand, within CCNA_00783 at 845.056 kb on - strand, within CCNA_00783 at 845.056 kb on - strand, within CCNA_00783 at 845.089 kb on - strand, within CCNA_00783 at 845.102 kb on - strand, within CCNA_00783 at 845.102 kb on - strand, within CCNA_00783
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 841,517 + CCNA_00780 0.82 +0.4 841,524 + CCNA_00780 0.82 -1.2 841,563 - CCNA_00780 0.87 +0.5 841,569 - CCNA_00780 0.87 +0.5 841,578 + CCNA_00780 0.88 +0.6 841,588 + CCNA_00780 0.89 -0.6 841,588 + CCNA_00780 0.89 -0.5 841,596 - -0.0 841,631 - +0.7 841,646 + -0.8 841,757 + -0.7 841,759 + -1.8 841,797 - -0.1 841,919 + CCNA_00781 0.23 -0.1 841,919 + CCNA_00781 0.23 +0.1 841,924 + CCNA_00781 0.24 +0.2 841,927 - CCNA_00781 0.25 +0.3 841,927 - CCNA_00781 0.25 +0.0 841,957 - CCNA_00781 0.33 -0.1 842,013 + CCNA_00781 0.49 -0.1 842,021 - CCNA_00781 0.51 -1.7 842,021 - CCNA_00781 0.51 -0.4 842,021 - CCNA_00781 0.51 +0.2 842,021 - CCNA_00781 0.51 -1.1 842,046 + CCNA_00781 0.58 +0.3 842,099 + CCNA_00781 0.73 +0.3 842,099 + CCNA_00781 0.73 -0.0 842,099 + CCNA_00781 0.73 -0.6 842,099 + CCNA_00781 0.73 +1.2 842,099 + CCNA_00781 0.73 +0.4 842,107 - CCNA_00781 0.75 -0.1 842,107 - CCNA_00781 0.75 +0.9 842,107 - CCNA_00781 0.75 -0.2 842,107 - CCNA_00781 0.75 -1.0 842,107 - CCNA_00781 0.75 +0.1 842,134 + CCNA_00781 0.83 +0.1 842,134 + CCNA_00781 0.83 +0.5 842,134 + CCNA_00781 0.83 -0.7 842,134 + CCNA_00781 0.83 +0.2 842,134 + CCNA_00781 0.83 -1.4 842,134 + CCNA_00781 0.83 +0.1 842,134 + CCNA_00781 0.83 -0.1 842,134 + CCNA_00781 0.83 -2.5 842,142 - CCNA_00781 0.85 -0.4 842,142 - CCNA_00781 0.85 +1.8 842,142 - CCNA_00781 0.85 -0.2 842,142 - CCNA_00781 0.85 -1.5 842,142 - CCNA_00781 0.85 +0.5 842,461 + -0.1 842,500 - +1.5 842,522 - -0.4 842,557 - -0.3 842,559 + -0.4 842,567 - -0.6 842,567 - +0.6 842,579 - +0.4 842,604 + -0.8 842,604 + +0.6 842,604 + -0.5 842,612 - +0.6 842,612 - -0.1 842,612 - +0.2 842,614 + +0.0 842,614 + -2.3 842,614 + -0.3 842,622 - -0.1 842,633 + -0.2 842,720 + CCNA_00782 0.14 -0.3 842,720 + CCNA_00782 0.14 +0.2 842,721 - CCNA_00782 0.14 +0.5 842,728 - CCNA_00782 0.15 +2.1 842,763 + CCNA_00782 0.17 +0.6 842,793 + CCNA_00782 0.19 -0.2 842,805 - CCNA_00782 0.20 +0.3 842,810 + CCNA_00782 0.20 -1.3 842,840 + CCNA_00782 0.22 +0.2 842,840 + CCNA_00782 0.22 -0.1 842,848 - CCNA_00782 0.22 +0.1 842,858 + CCNA_00782 0.23 -0.7 842,882 + CCNA_00782 0.24 +0.4 842,995 + CCNA_00782 0.31 -2.1 843,029 - CCNA_00782 0.33 +0.6 843,054 + CCNA_00782 0.35 +0.4 843,132 + CCNA_00782 0.40 +0.0 843,132 + CCNA_00782 0.40 +0.8 843,140 - CCNA_00782 0.40 +0.4 843,140 - CCNA_00782 0.40 +0.6 843,154 - CCNA_00782 0.41 +0.3 843,154 - CCNA_00782 0.41 +1.0 843,162 + CCNA_00782 0.42 -0.0 843,203 + CCNA_00782 0.44 -0.3 843,204 - CCNA_00782 0.44 +0.5 843,233 - CCNA_00782 0.46 +1.0 843,238 - CCNA_00782 0.46 -0.1 843,243 - CCNA_00782 0.47 +0.2 843,262 - CCNA_00782 0.48 +0.3 843,303 + CCNA_00782 0.50 -0.3 843,392 - CCNA_00782 0.56 -1.4 843,394 - CCNA_00782 0.56 +0.3 843,394 - CCNA_00782 0.56 -0.3 843,404 + CCNA_00782 0.56 -0.7 843,414 + CCNA_00782 0.57 -0.1 843,495 + CCNA_00782 0.62 -0.2 843,591 + CCNA_00782 0.68 -0.5 843,591 + CCNA_00782 0.68 +0.4 843,591 + CCNA_00782 0.68 -1.6 843,591 + CCNA_00782 0.68 +0.4 843,596 + CCNA_00782 0.68 +0.8 843,599 - CCNA_00782 0.69 +0.1 843,599 - CCNA_00782 0.69 -0.6 843,599 - CCNA_00782 0.69 -0.1 843,604 - CCNA_00782 0.69 +1.8 843,647 + CCNA_00782 0.71 +0.8 843,655 - CCNA_00782 0.72 +0.6 843,700 - CCNA_00782 0.75 -0.3 843,726 + CCNA_00782 0.76 +0.2 843,727 - CCNA_00782 0.76 -0.1 843,727 - CCNA_00782 0.76 -0.3 843,731 + CCNA_00782 0.77 -0.5 843,731 + CCNA_00782 0.77 -0.9 843,736 + CCNA_00782 0.77 -1.3 843,744 - CCNA_00782 0.77 -0.9 843,744 - CCNA_00782 0.77 +0.5 843,760 + CCNA_00782 0.78 +0.4 843,766 + CCNA_00782 0.79 -1.8 843,791 - CCNA_00782 0.80 +0.4 843,801 - CCNA_00782 0.81 -0.2 843,801 - CCNA_00782 0.81 +0.1 843,803 + CCNA_00782 0.81 -0.5 843,811 - CCNA_00782 0.82 +0.4 843,844 - CCNA_00782 0.84 -0.0 843,875 + CCNA_00782 0.86 -0.5 843,875 + CCNA_00782 0.86 -0.0 843,875 + CCNA_00782 0.86 +1.0 843,883 - CCNA_00782 0.86 +0.2 843,883 - CCNA_00782 0.86 -0.1 843,905 + CCNA_00782 0.87 +0.8 843,937 + CCNA_00782 0.89 -0.3 843,947 + -0.6 843,947 + +0.1 843,947 + +0.8 843,947 + -0.7 843,947 + +0.9 843,947 + +0.8 843,953 + +0.2 843,953 + -0.9 843,955 - +0.7 843,955 - -0.9 843,955 - +0.1 843,955 - +0.6 843,955 - +0.3 843,955 - +0.2 843,955 - +0.2 843,956 - +1.4 843,960 - -0.0 843,990 - -0.5 843,991 - -0.3 844,012 - -0.4 844,034 - +0.0 844,052 + -0.6 844,052 + +1.5 844,069 - +0.2 844,152 + +0.4 844,157 + -0.6 844,160 - +1.0 844,174 + +0.1 844,174 + +0.0 844,182 - +0.5 844,182 - -0.6 844,206 + +0.1 844,206 + -1.0 844,234 + -0.9 844,242 - -1.6 844,288 + +0.2 844,296 - -0.0 844,333 + -0.1 844,395 + +0.0 844,395 + -1.0 844,395 + +0.2 844,395 + -0.2 844,395 + +0.5 844,403 - +0.5 844,403 - +2.0 844,403 - -0.6 844,403 - +0.4 844,403 - -1.8 844,403 - -0.0 844,417 + +0.0 844,417 + +0.4 844,438 + +0.7 844,459 + -0.6 844,486 + -0.1 844,486 + +0.2 844,486 + +0.5 844,494 - -0.2 844,494 - -0.6 844,518 - +0.4 844,568 + +1.1 844,594 + -1.7 844,597 - +0.2 844,633 + -0.3 844,634 + -1.0 844,664 - CCNA_00783 0.11 -0.8 844,682 + CCNA_00783 0.12 -1.0 844,686 + CCNA_00783 0.12 -1.3 844,707 + CCNA_00783 0.13 -1.3 844,707 + CCNA_00783 0.13 +0.4 844,707 + CCNA_00783 0.13 -0.3 844,774 + CCNA_00783 0.16 -1.3 844,804 - CCNA_00783 0.18 -0.6 844,846 - CCNA_00783 0.20 -2.5 844,859 + CCNA_00783 0.21 +0.0 844,859 + CCNA_00783 0.21 +0.3 844,862 + CCNA_00783 0.21 +0.9 844,864 + CCNA_00783 0.21 -0.2 844,873 - CCNA_00783 0.21 -0.9 844,892 + CCNA_00783 0.22 -0.6 844,945 - CCNA_00783 0.25 -0.0 844,985 + CCNA_00783 0.27 -1.9 844,985 + CCNA_00783 0.27 -0.4 844,987 + CCNA_00783 0.27 +0.4 844,993 - CCNA_00783 0.27 +0.9 845,019 - CCNA_00783 0.29 -0.5 845,048 + CCNA_00783 0.30 +0.6 845,048 + CCNA_00783 0.30 -0.6 845,056 - CCNA_00783 0.31 +0.8 845,056 - CCNA_00783 0.31 -0.1 845,089 - CCNA_00783 0.32 -0.5 845,102 - CCNA_00783 0.33 -0.3 845,102 - CCNA_00783 0.33 -0.3
Or see this region's nucleotide sequence