Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00776 and CCNA_00777 are separated by 113 nucleotides CCNA_00777 and CCNA_00778 are separated by 159 nucleotides
CCNA_00776: CCNA_00776 - OAR protein precursor, at 831,686 to 835,249
_00776
CCNA_00777: CCNA_00777 - PAS family GGDEF/EAL protein, at 835,363 to 837,786
_00777
CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778
_00778
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -2
-1
0
1
2 at 834.376 kb on - strand, within CCNA_00776 at 834.441 kb on - strand, within CCNA_00776 at 834.441 kb on - strand, within CCNA_00776 at 834.441 kb on - strand, within CCNA_00776 at 834.458 kb on - strand, within CCNA_00776 at 834.503 kb on - strand, within CCNA_00776 at 834.565 kb on + strand, within CCNA_00776 at 834.565 kb on + strand, within CCNA_00776 at 834.573 kb on - strand, within CCNA_00776 at 834.622 kb on + strand, within CCNA_00776 at 834.687 kb on + strand, within CCNA_00776 at 834.739 kb on - strand, within CCNA_00776 at 834.740 kb on + strand, within CCNA_00776 at 834.803 kb on - strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.913 kb on - strand at 834.950 kb on - strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 835.030 kb on + strand at 835.038 kb on - strand at 835.075 kb on + strand at 835.087 kb on - strand at 835.089 kb on - strand at 835.207 kb on - strand at 835.207 kb on - strand at 835.296 kb on - strand at 835.333 kb on + strand at 835.341 kb on - strand at 835.341 kb on - strand at 835.344 kb on + strand at 835.354 kb on + strand at 835.362 kb on - strand at 835.461 kb on - strand at 835.489 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.501 kb on + strand at 835.504 kb on - strand at 835.504 kb on - strand at 835.529 kb on + strand at 835.533 kb on - strand at 835.577 kb on - strand at 835.589 kb on - strand at 835.604 kb on - strand at 835.664 kb on + strand, within CCNA_00777 at 835.664 kb on + strand, within CCNA_00777 at 835.664 kb on + strand, within CCNA_00777 at 835.672 kb on - strand, within CCNA_00777 at 835.672 kb on - strand, within CCNA_00777 at 835.672 kb on - strand, within CCNA_00777 at 835.682 kb on - strand, within CCNA_00777 at 835.773 kb on + strand, within CCNA_00777 at 835.773 kb on + strand, within CCNA_00777 at 835.781 kb on - strand, within CCNA_00777 at 835.792 kb on + strand, within CCNA_00777 at 835.800 kb on - strand, within CCNA_00777 at 835.806 kb on + strand, within CCNA_00777 at 835.827 kb on - strand, within CCNA_00777 at 835.853 kb on - strand, within CCNA_00777 at 835.861 kb on - strand, within CCNA_00777 at 835.863 kb on - strand, within CCNA_00777 at 835.873 kb on - strand, within CCNA_00777 at 835.873 kb on - strand, within CCNA_00777 at 835.873 kb on - strand, within CCNA_00777 at 835.902 kb on + strand, within CCNA_00777 at 836.004 kb on - strand, within CCNA_00777 at 836.005 kb on + strand, within CCNA_00777 at 836.008 kb on + strand, within CCNA_00777 at 836.018 kb on - strand, within CCNA_00777 at 836.068 kb on + strand, within CCNA_00777 at 836.141 kb on - strand, within CCNA_00777 at 836.149 kb on + strand, within CCNA_00777 at 836.149 kb on + strand, within CCNA_00777 at 836.157 kb on - strand, within CCNA_00777 at 836.157 kb on - strand, within CCNA_00777 at 836.191 kb on - strand, within CCNA_00777 at 836.195 kb on + strand, within CCNA_00777 at 836.203 kb on - strand, within CCNA_00777 at 836.210 kb on - strand, within CCNA_00777 at 836.252 kb on + strand, within CCNA_00777 at 836.257 kb on + strand, within CCNA_00777 at 836.268 kb on + strand, within CCNA_00777 at 836.273 kb on + strand, within CCNA_00777 at 836.281 kb on - strand, within CCNA_00777 at 836.326 kb on + strand, within CCNA_00777 at 836.341 kb on + strand, within CCNA_00777 at 836.341 kb on + strand, within CCNA_00777 at 836.391 kb on - strand, within CCNA_00777 at 836.391 kb on - strand, within CCNA_00777 at 836.436 kb on - strand, within CCNA_00777 at 836.512 kb on + strand, within CCNA_00777 at 836.536 kb on - strand, within CCNA_00777 at 836.542 kb on - strand, within CCNA_00777 at 836.558 kb on - strand, within CCNA_00777 at 836.560 kb on + strand, within CCNA_00777 at 836.569 kb on - strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.588 kb on - strand, within CCNA_00777 at 836.593 kb on + strand, within CCNA_00777 at 836.598 kb on + strand, within CCNA_00777 at 836.601 kb on - strand, within CCNA_00777 at 836.608 kb on + strand, within CCNA_00777 at 836.608 kb on + strand, within CCNA_00777 at 836.608 kb on + strand, within CCNA_00777 at 836.615 kb on + strand, within CCNA_00777 at 836.616 kb on - strand, within CCNA_00777 at 836.626 kb on + strand, within CCNA_00777 at 836.642 kb on + strand, within CCNA_00777 at 836.644 kb on - strand, within CCNA_00777 at 836.644 kb on - strand, within CCNA_00777 at 836.653 kb on + strand, within CCNA_00777 at 836.680 kb on - strand, within CCNA_00777 at 836.694 kb on - strand, within CCNA_00777 at 836.694 kb on - strand, within CCNA_00777 at 836.799 kb on - strand, within CCNA_00777 at 836.827 kb on - strand, within CCNA_00777 at 836.874 kb on - strand, within CCNA_00777 at 836.955 kb on + strand, within CCNA_00777 at 836.963 kb on - strand, within CCNA_00777 at 837.036 kb on - strand, within CCNA_00777 at 837.054 kb on + strand, within CCNA_00777 at 837.074 kb on - strand, within CCNA_00777 at 837.093 kb on + strand, within CCNA_00777 at 837.152 kb on + strand, within CCNA_00777 at 837.174 kb on + strand, within CCNA_00777 at 837.231 kb on - strand, within CCNA_00777 at 837.239 kb on - strand, within CCNA_00777 at 837.254 kb on + strand, within CCNA_00777 at 837.269 kb on + strand, within CCNA_00777 at 837.269 kb on + strand, within CCNA_00777 at 837.276 kb on - strand, within CCNA_00777 at 837.290 kb on - strand, within CCNA_00777 at 837.312 kb on + strand, within CCNA_00777 at 837.313 kb on + strand, within CCNA_00777 at 837.313 kb on + strand, within CCNA_00777 at 837.376 kb on - strand, within CCNA_00777 at 837.388 kb on - strand, within CCNA_00777 at 837.393 kb on - strand, within CCNA_00777 at 837.411 kb on - strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.448 kb on + strand, within CCNA_00777 at 837.453 kb on + strand, within CCNA_00777 at 837.462 kb on + strand, within CCNA_00777 at 837.516 kb on + strand, within CCNA_00777 at 837.571 kb on - strand at 837.586 kb on + strand at 837.595 kb on + strand at 837.651 kb on - strand at 837.670 kb on + strand at 837.679 kb on - strand at 837.679 kb on - strand at 837.679 kb on - strand at 837.684 kb on - strand at 837.714 kb on - strand at 837.742 kb on - strand at 837.792 kb on + strand at 837.792 kb on + strand at 837.792 kb on + strand at 837.792 kb on + strand at 837.800 kb on - strand at 837.802 kb on - strand at 837.847 kb on + strand at 837.855 kb on - strand at 837.943 kb on + strand at 837.952 kb on - strand at 837.982 kb on + strand at 837.990 kb on - strand at 838.052 kb on + strand at 838.062 kb on + strand at 838.070 kb on + strand at 838.095 kb on - strand at 838.166 kb on - strand, within CCNA_00778 at 838.215 kb on + strand, within CCNA_00778 at 838.253 kb on - strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.338 kb on + strand, within CCNA_00778 at 838.368 kb on - strand, within CCNA_00778 at 838.378 kb on - strand, within CCNA_00778 at 838.427 kb on + strand, within CCNA_00778 at 838.455 kb on - strand, within CCNA_00778 at 838.477 kb on - strand, within CCNA_00778 at 838.484 kb on - strand, within CCNA_00778 at 838.485 kb on - strand, within CCNA_00778 at 838.487 kb on + strand, within CCNA_00778 at 838.487 kb on + strand, within CCNA_00778 at 838.562 kb on + strand, within CCNA_00778 at 838.571 kb on - strand, within CCNA_00778 at 838.597 kb on - strand, within CCNA_00778 at 838.623 kb on + strand, within CCNA_00778 at 838.704 kb on + strand, within CCNA_00778
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 834,376 - CCNA_00776 0.75 -2.0 834,441 - CCNA_00776 0.77 +0.4 834,441 - CCNA_00776 0.77 -1.2 834,441 - CCNA_00776 0.77 -0.9 834,458 - CCNA_00776 0.78 +0.5 834,503 - CCNA_00776 0.79 -0.6 834,565 + CCNA_00776 0.81 +0.5 834,565 + CCNA_00776 0.81 -0.6 834,573 - CCNA_00776 0.81 -0.2 834,622 + CCNA_00776 0.82 -0.6 834,687 + CCNA_00776 0.84 +0.5 834,739 - CCNA_00776 0.86 -0.3 834,740 + CCNA_00776 0.86 +0.2 834,803 - CCNA_00776 0.87 -0.5 834,812 + CCNA_00776 0.88 -0.1 834,812 + CCNA_00776 0.88 +0.7 834,812 + CCNA_00776 0.88 -1.4 834,812 + CCNA_00776 0.88 -0.1 834,812 + CCNA_00776 0.88 -0.8 834,820 - CCNA_00776 0.88 -0.1 834,820 - CCNA_00776 0.88 +0.1 834,820 - CCNA_00776 0.88 -0.1 834,820 - CCNA_00776 0.88 +0.4 834,820 - CCNA_00776 0.88 +0.5 834,820 - CCNA_00776 0.88 -0.2 834,913 - -0.0 834,950 - -0.9 834,977 + -0.2 834,977 + +0.7 834,977 + -0.6 834,977 + -0.7 834,977 + -1.1 834,977 + +0.0 834,977 + +0.1 834,985 - -0.1 834,985 - +0.2 834,985 - +0.5 834,985 - -1.9 834,985 - -0.9 834,985 - +0.1 834,985 - -0.1 834,985 - +1.1 835,030 + -2.0 835,038 - +0.2 835,075 + +0.4 835,087 - +1.2 835,089 - -0.5 835,207 - +1.2 835,207 - -0.2 835,296 - -1.4 835,333 + +0.9 835,341 - +0.1 835,341 - -0.3 835,344 + -1.2 835,354 + +1.6 835,362 - +2.6 835,461 - -0.2 835,489 + +1.0 835,496 + -1.2 835,496 + -1.0 835,496 + +0.2 835,496 + -1.4 835,501 + +0.1 835,504 - -0.7 835,504 - -0.8 835,529 + +0.1 835,533 - +0.3 835,577 - -0.3 835,589 - -0.2 835,604 - +0.3 835,664 + CCNA_00777 0.12 -0.5 835,664 + CCNA_00777 0.12 -0.1 835,664 + CCNA_00777 0.12 -0.4 835,672 - CCNA_00777 0.13 -1.2 835,672 - CCNA_00777 0.13 -0.2 835,672 - CCNA_00777 0.13 +0.7 835,682 - CCNA_00777 0.13 -0.0 835,773 + CCNA_00777 0.17 -0.1 835,773 + CCNA_00777 0.17 -1.5 835,781 - CCNA_00777 0.17 +0.5 835,792 + CCNA_00777 0.18 -0.8 835,800 - CCNA_00777 0.18 -0.1 835,806 + CCNA_00777 0.18 +0.8 835,827 - CCNA_00777 0.19 +0.1 835,853 - CCNA_00777 0.20 -0.0 835,861 - CCNA_00777 0.21 -0.2 835,863 - CCNA_00777 0.21 -0.3 835,873 - CCNA_00777 0.21 -0.0 835,873 - CCNA_00777 0.21 +0.9 835,873 - CCNA_00777 0.21 -0.7 835,902 + CCNA_00777 0.22 -0.8 836,004 - CCNA_00777 0.26 +0.8 836,005 + CCNA_00777 0.26 +0.2 836,008 + CCNA_00777 0.27 -0.3 836,018 - CCNA_00777 0.27 -0.6 836,068 + CCNA_00777 0.29 -1.2 836,141 - CCNA_00777 0.32 -0.7 836,149 + CCNA_00777 0.32 -1.7 836,149 + CCNA_00777 0.32 -1.0 836,157 - CCNA_00777 0.33 -2.5 836,157 - CCNA_00777 0.33 +2.3 836,191 - CCNA_00777 0.34 +0.2 836,195 + CCNA_00777 0.34 -1.0 836,203 - CCNA_00777 0.35 +0.5 836,210 - CCNA_00777 0.35 +0.1 836,252 + CCNA_00777 0.37 -0.4 836,257 + CCNA_00777 0.37 +0.6 836,268 + CCNA_00777 0.37 -0.0 836,273 + CCNA_00777 0.38 -0.7 836,281 - CCNA_00777 0.38 +0.0 836,326 + CCNA_00777 0.40 -0.5 836,341 + CCNA_00777 0.40 -1.9 836,341 + CCNA_00777 0.40 +0.1 836,391 - CCNA_00777 0.42 +0.5 836,391 - CCNA_00777 0.42 +0.6 836,436 - CCNA_00777 0.44 +0.7 836,512 + CCNA_00777 0.47 -0.6 836,536 - CCNA_00777 0.48 +0.0 836,542 - CCNA_00777 0.49 +0.6 836,558 - CCNA_00777 0.49 +0.5 836,560 + CCNA_00777 0.49 +0.5 836,569 - CCNA_00777 0.50 +1.9 836,570 + CCNA_00777 0.50 +0.8 836,570 + CCNA_00777 0.50 +0.5 836,570 + CCNA_00777 0.50 +0.3 836,570 + CCNA_00777 0.50 -0.2 836,570 + CCNA_00777 0.50 +0.3 836,578 - CCNA_00777 0.50 -1.0 836,578 - CCNA_00777 0.50 -0.2 836,578 - CCNA_00777 0.50 +0.6 836,578 - CCNA_00777 0.50 +0.8 836,578 - CCNA_00777 0.50 -2.3 836,578 - CCNA_00777 0.50 -1.1 836,588 - CCNA_00777 0.51 -0.8 836,593 + CCNA_00777 0.51 +0.9 836,598 + CCNA_00777 0.51 +1.3 836,601 - CCNA_00777 0.51 +0.5 836,608 + CCNA_00777 0.51 -0.4 836,608 + CCNA_00777 0.51 -0.6 836,608 + CCNA_00777 0.51 +0.5 836,615 + CCNA_00777 0.52 -0.0 836,616 - CCNA_00777 0.52 +0.8 836,626 + CCNA_00777 0.52 +0.2 836,642 + CCNA_00777 0.53 +0.9 836,644 - CCNA_00777 0.53 +0.7 836,644 - CCNA_00777 0.53 +0.2 836,653 + CCNA_00777 0.53 -1.2 836,680 - CCNA_00777 0.54 +1.5 836,694 - CCNA_00777 0.55 -0.6 836,694 - CCNA_00777 0.55 +0.4 836,799 - CCNA_00777 0.59 +0.7 836,827 - CCNA_00777 0.60 -1.1 836,874 - CCNA_00777 0.62 +0.1 836,955 + CCNA_00777 0.66 +1.2 836,963 - CCNA_00777 0.66 +1.4 837,036 - CCNA_00777 0.69 -0.3 837,054 + CCNA_00777 0.70 +0.2 837,074 - CCNA_00777 0.71 +0.8 837,093 + CCNA_00777 0.71 -0.6 837,152 + CCNA_00777 0.74 -0.7 837,174 + CCNA_00777 0.75 +0.7 837,231 - CCNA_00777 0.77 +0.6 837,239 - CCNA_00777 0.77 +0.4 837,254 + CCNA_00777 0.78 -0.5 837,269 + CCNA_00777 0.79 +0.3 837,269 + CCNA_00777 0.79 -0.2 837,276 - CCNA_00777 0.79 +0.8 837,290 - CCNA_00777 0.79 +1.6 837,312 + CCNA_00777 0.80 +0.5 837,313 + CCNA_00777 0.80 +0.2 837,313 + CCNA_00777 0.80 -0.1 837,376 - CCNA_00777 0.83 +0.2 837,388 - CCNA_00777 0.84 -0.2 837,393 - CCNA_00777 0.84 +0.9 837,411 - CCNA_00777 0.84 +0.2 837,422 + CCNA_00777 0.85 +0.4 837,422 + CCNA_00777 0.85 -0.3 837,422 + CCNA_00777 0.85 -0.5 837,422 + CCNA_00777 0.85 -0.6 837,422 + CCNA_00777 0.85 -0.2 837,422 + CCNA_00777 0.85 +0.8 837,422 + CCNA_00777 0.85 -0.3 837,422 + CCNA_00777 0.85 -0.8 837,422 + CCNA_00777 0.85 -0.6 837,422 + CCNA_00777 0.85 -0.0 837,422 + CCNA_00777 0.85 +0.0 837,430 - CCNA_00777 0.85 -0.1 837,430 - CCNA_00777 0.85 -0.2 837,430 - CCNA_00777 0.85 +0.3 837,430 - CCNA_00777 0.85 +0.3 837,448 + CCNA_00777 0.86 +0.1 837,453 + CCNA_00777 0.86 +0.1 837,462 + CCNA_00777 0.87 -1.1 837,516 + CCNA_00777 0.89 -0.7 837,571 - -0.1 837,586 + -1.5 837,595 + +0.8 837,651 - +0.3 837,670 + +0.5 837,679 - +0.2 837,679 - +0.0 837,679 - +0.1 837,684 - -0.9 837,714 - -0.5 837,742 - -0.2 837,792 + +0.2 837,792 + -0.7 837,792 + +0.5 837,792 + +1.0 837,800 - +0.7 837,802 - +0.8 837,847 + -0.0 837,855 - +0.1 837,943 + +0.3 837,952 - +0.4 837,982 + -2.6 837,990 - -0.4 838,052 + -2.0 838,062 + +0.3 838,070 + -2.1 838,095 - -0.6 838,166 - CCNA_00778 0.12 -1.2 838,215 + CCNA_00778 0.15 -0.8 838,253 - CCNA_00778 0.17 +0.2 838,304 + CCNA_00778 0.20 -0.9 838,304 + CCNA_00778 0.20 +0.5 838,304 + CCNA_00778 0.20 -1.5 838,312 - CCNA_00778 0.20 -0.0 838,338 + CCNA_00778 0.21 -0.5 838,368 - CCNA_00778 0.23 -0.1 838,378 - CCNA_00778 0.24 -0.9 838,427 + CCNA_00778 0.26 -1.8 838,455 - CCNA_00778 0.28 +0.2 838,477 - CCNA_00778 0.29 +0.1 838,484 - CCNA_00778 0.29 +0.2 838,485 - CCNA_00778 0.29 +0.1 838,487 + CCNA_00778 0.30 -2.0 838,487 + CCNA_00778 0.30 -1.0 838,562 + CCNA_00778 0.34 +0.2 838,571 - CCNA_00778 0.34 +2.2 838,597 - CCNA_00778 0.36 -0.2 838,623 + CCNA_00778 0.37 -2.7 838,704 + CCNA_00778 0.41 +0.5
Or see this region's nucleotide sequence