Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00719

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03931 and CCNA_03932 are separated by 2 nucleotidesCCNA_03932 and CCNA_03933 are separated by 30 nucleotidesCCNA_03933 and CCNA_00719 are separated by 115 nucleotidesCCNA_00719 and CCNA_00720 overlap by 40 nucleotides CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730 _03931 CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987 _03932 CCNA_03933: CCNA_03933 - hypothetical protein, at 774,018 to 774,278 _03933 CCNA_00719: CCNA_00719 - type I secretion adaptor protein hlyD, at 774,394 to 775,635 _00719 CCNA_00720: CCNA_00720 - type I protein secretion ATP-binding protein/type I protein secretion transmembrane subunit/type I secretion processing peptidase, at 775,596 to 777,776 _00720 Position (kb) 774 775 776Strain fitness (log2 ratio) -2 -1 0 1 2at 773.640 kb on + strand, within CCNA_03931at 773.732 kb on + strandat 773.732 kb on + strandat 773.732 kb on + strandat 773.742 kb on + strandat 773.750 kb on - strandat 773.757 kb on - strandat 773.757 kb on - strandat 773.778 kb on + strand, within CCNA_03932at 773.821 kb on - strand, within CCNA_03932at 773.823 kb on + strand, within CCNA_03932at 773.829 kb on + strand, within CCNA_03932at 773.837 kb on - strand, within CCNA_03932at 773.865 kb on - strand, within CCNA_03932at 773.890 kb on - strand, within CCNA_03932at 773.909 kb on - strand, within CCNA_03932at 773.909 kb on - strand, within CCNA_03932at 773.924 kb on + strand, within CCNA_03932at 773.936 kb on + strand, within CCNA_03932at 773.944 kb on - strand, within CCNA_03932at 773.954 kb on - strand, within CCNA_03932at 773.964 kb on - strandat 774.038 kb on - strandat 774.038 kb on - strandat 774.060 kb on + strand, within CCNA_03933at 774.065 kb on - strand, within CCNA_03933at 774.065 kb on - strand, within CCNA_03933at 774.090 kb on - strand, within CCNA_03933at 774.109 kb on - strand, within CCNA_03933at 774.115 kb on - strand, within CCNA_03933at 774.119 kb on + strand, within CCNA_03933at 774.123 kb on - strand, within CCNA_03933at 774.181 kb on + strand, within CCNA_03933at 774.188 kb on + strand, within CCNA_03933at 774.192 kb on + strand, within CCNA_03933at 774.200 kb on - strand, within CCNA_03933at 774.204 kb on + strand, within CCNA_03933at 774.209 kb on + strand, within CCNA_03933at 774.280 kb on + strandat 774.285 kb on + strandat 774.288 kb on - strandat 774.299 kb on - strandat 774.301 kb on - strandat 774.309 kb on - strandat 774.337 kb on - strandat 774.360 kb on - strandat 774.424 kb on + strandat 774.427 kb on - strandat 774.446 kb on - strandat 774.467 kb on + strandat 774.552 kb on - strand, within CCNA_00719at 774.553 kb on + strand, within CCNA_00719at 774.575 kb on + strand, within CCNA_00719at 774.583 kb on + strand, within CCNA_00719at 774.618 kb on + strand, within CCNA_00719at 774.618 kb on + strand, within CCNA_00719at 774.619 kb on + strand, within CCNA_00719at 774.635 kb on + strand, within CCNA_00719at 774.643 kb on - strand, within CCNA_00719at 774.643 kb on - strand, within CCNA_00719at 774.665 kb on + strand, within CCNA_00719at 774.685 kb on + strand, within CCNA_00719at 774.706 kb on + strand, within CCNA_00719at 774.714 kb on - strand, within CCNA_00719at 774.743 kb on + strand, within CCNA_00719at 774.751 kb on - strand, within CCNA_00719at 774.751 kb on - strand, within CCNA_00719at 774.764 kb on - strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.838 kb on + strand, within CCNA_00719at 774.846 kb on - strand, within CCNA_00719at 774.846 kb on - strand, within CCNA_00719at 774.906 kb on - strand, within CCNA_00719at 774.967 kb on + strand, within CCNA_00719at 774.967 kb on + strand, within CCNA_00719at 774.975 kb on - strand, within CCNA_00719at 774.997 kb on + strand, within CCNA_00719at 775.018 kb on + strand, within CCNA_00719at 775.020 kb on + strand, within CCNA_00719at 775.045 kb on - strand, within CCNA_00719at 775.077 kb on - strand, within CCNA_00719at 775.117 kb on + strand, within CCNA_00719at 775.118 kb on + strand, within CCNA_00719at 775.170 kb on - strand, within CCNA_00719at 775.228 kb on + strand, within CCNA_00719at 775.228 kb on + strand, within CCNA_00719at 775.270 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.296 kb on + strand, within CCNA_00719at 775.304 kb on - strand, within CCNA_00719at 775.304 kb on - strand, within CCNA_00719at 775.304 kb on - strand, within CCNA_00719at 775.314 kb on - strand, within CCNA_00719at 775.336 kb on + strand, within CCNA_00719at 775.364 kb on - strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.423 kb on + strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.431 kb on - strand, within CCNA_00719at 775.433 kb on + strand, within CCNA_00719at 775.441 kb on - strand, within CCNA_00719at 775.522 kb on + strandat 775.549 kb on + strandat 775.562 kb on + strandat 775.713 kb on + strandat 775.721 kb on - strandat 775.721 kb on - strandat 775.721 kb on - strandat 775.771 kb on + strandat 775.809 kb on + strandat 775.817 kb on - strand, within CCNA_00720at 775.819 kb on + strand, within CCNA_00720at 775.820 kb on - strand, within CCNA_00720at 775.827 kb on - strand, within CCNA_00720at 775.829 kb on - strand, within CCNA_00720at 775.839 kb on + strand, within CCNA_00720at 775.839 kb on + strand, within CCNA_00720at 775.847 kb on - strand, within CCNA_00720at 775.847 kb on - strand, within CCNA_00720at 775.847 kb on - strand, within CCNA_00720at 775.847 kb on - strand, within CCNA_00720at 775.903 kb on + strand, within CCNA_00720at 775.916 kb on - strand, within CCNA_00720at 775.916 kb on - strand, within CCNA_00720at 775.921 kb on - strand, within CCNA_00720at 775.928 kb on - strand, within CCNA_00720at 775.931 kb on + strand, within CCNA_00720at 775.945 kb on + strand, within CCNA_00720at 775.946 kb on - strand, within CCNA_00720at 775.946 kb on - strand, within CCNA_00720at 775.950 kb on + strand, within CCNA_00720at 775.958 kb on - strand, within CCNA_00720at 775.968 kb on - strand, within CCNA_00720at 775.978 kb on + strand, within CCNA_00720at 775.997 kb on + strand, within CCNA_00720at 775.999 kb on + strand, within CCNA_00720at 775.999 kb on + strand, within CCNA_00720at 776.005 kb on - strand, within CCNA_00720at 776.007 kb on - strand, within CCNA_00720at 776.007 kb on - strand, within CCNA_00720at 776.018 kb on + strand, within CCNA_00720at 776.025 kb on + strand, within CCNA_00720at 776.041 kb on + strand, within CCNA_00720at 776.049 kb on - strand, within CCNA_00720at 776.107 kb on + strand, within CCNA_00720at 776.115 kb on - strand, within CCNA_00720at 776.121 kb on - strand, within CCNA_00720at 776.128 kb on + strand, within CCNA_00720at 776.136 kb on - strand, within CCNA_00720at 776.231 kb on + strand, within CCNA_00720at 776.231 kb on + strand, within CCNA_00720at 776.239 kb on - strand, within CCNA_00720at 776.239 kb on - strand, within CCNA_00720at 776.241 kb on + strand, within CCNA_00720at 776.259 kb on + strand, within CCNA_00720at 776.259 kb on + strand, within CCNA_00720at 776.266 kb on + strand, within CCNA_00720at 776.303 kb on + strand, within CCNA_00720at 776.349 kb on - strand, within CCNA_00720at 776.386 kb on + strand, within CCNA_00720at 776.415 kb on - strand, within CCNA_00720at 776.472 kb on + strand, within CCNA_00720at 776.551 kb on - strand, within CCNA_00720at 776.564 kb on - strand, within CCNA_00720at 776.593 kb on + strand, within CCNA_00720at 776.593 kb on + strand, within CCNA_00720at 776.593 kb on + strand, within CCNA_00720at 776.615 kb on + strand, within CCNA_00720

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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773,640 + CCNA_03931 0.69 -1.2
773,732 + +0.5
773,732 + -0.4
773,732 + +0.0
773,742 + -0.6
773,750 - +0.8
773,757 - -0.2
773,757 - +0.5
773,778 + CCNA_03932 0.18 +1.0
773,821 - CCNA_03932 0.35 +0.3
773,823 + CCNA_03932 0.35 -1.0
773,829 + CCNA_03932 0.38 -1.1
773,837 - CCNA_03932 0.41 -0.3
773,865 - CCNA_03932 0.52 +0.5
773,890 - CCNA_03932 0.62 -0.1
773,909 - CCNA_03932 0.69 +0.7
773,909 - CCNA_03932 0.69 -0.3
773,924 + CCNA_03932 0.75 -0.0
773,936 + CCNA_03932 0.80 -0.7
773,944 - CCNA_03932 0.83 +0.6
773,954 - CCNA_03932 0.87 +0.0
773,964 - +0.5
774,038 - -0.1
774,038 - +1.0
774,060 + CCNA_03933 0.16 -1.2
774,065 - CCNA_03933 0.18 -0.1
774,065 - CCNA_03933 0.18 +0.3
774,090 - CCNA_03933 0.28 +1.0
774,109 - CCNA_03933 0.35 +0.9
774,115 - CCNA_03933 0.37 -1.4
774,119 + CCNA_03933 0.39 -0.4
774,123 - CCNA_03933 0.40 -0.0
774,181 + CCNA_03933 0.62 -1.0
774,188 + CCNA_03933 0.65 -0.5
774,192 + CCNA_03933 0.67 +0.7
774,200 - CCNA_03933 0.70 +0.6
774,204 + CCNA_03933 0.71 -0.3
774,209 + CCNA_03933 0.73 -0.6
774,280 + +0.1
774,285 + +1.5
774,288 - +1.2
774,299 - +0.5
774,301 - +0.9
774,309 - +1.0
774,337 - +0.2
774,360 - +0.1
774,424 + +0.5
774,427 - +0.6
774,446 - +0.8
774,467 + -0.4
774,552 - CCNA_00719 0.13 +0.4
774,553 + CCNA_00719 0.13 -0.8
774,575 + CCNA_00719 0.15 -1.3
774,583 + CCNA_00719 0.15 -0.2
774,618 + CCNA_00719 0.18 +0.8
774,618 + CCNA_00719 0.18 -1.0
774,619 + CCNA_00719 0.18 +2.2
774,635 + CCNA_00719 0.19 +0.0
774,643 - CCNA_00719 0.20 +0.5
774,643 - CCNA_00719 0.20 -1.4
774,665 + CCNA_00719 0.22 +0.8
774,685 + CCNA_00719 0.23 -0.1
774,706 + CCNA_00719 0.25 +1.1
774,714 - CCNA_00719 0.26 -1.1
774,743 + CCNA_00719 0.28 +0.2
774,751 - CCNA_00719 0.29 +0.2
774,751 - CCNA_00719 0.29 +1.6
774,764 - CCNA_00719 0.30 -0.8
774,838 + CCNA_00719 0.36 -0.5
774,838 + CCNA_00719 0.36 -0.6
774,838 + CCNA_00719 0.36 +0.2
774,838 + CCNA_00719 0.36 +1.4
774,838 + CCNA_00719 0.36 -0.8
774,838 + CCNA_00719 0.36 -0.9
774,846 - CCNA_00719 0.36 -0.2
774,846 - CCNA_00719 0.36 -0.8
774,906 - CCNA_00719 0.41 -1.1
774,967 + CCNA_00719 0.46 +1.0
774,967 + CCNA_00719 0.46 +1.3
774,975 - CCNA_00719 0.47 -0.1
774,997 + CCNA_00719 0.49 -0.8
775,018 + CCNA_00719 0.50 +0.5
775,020 + CCNA_00719 0.50 +0.0
775,045 - CCNA_00719 0.52 +0.4
775,077 - CCNA_00719 0.55 +1.2
775,117 + CCNA_00719 0.58 +0.3
775,118 + CCNA_00719 0.58 -0.7
775,170 - CCNA_00719 0.62 -0.3
775,228 + CCNA_00719 0.67 -0.7
775,228 + CCNA_00719 0.67 -0.3
775,270 + CCNA_00719 0.71 +0.4
775,296 + CCNA_00719 0.73 +0.5
775,296 + CCNA_00719 0.73 -0.8
775,296 + CCNA_00719 0.73 +1.2
775,296 + CCNA_00719 0.73 +0.5
775,296 + CCNA_00719 0.73 -0.4
775,296 + CCNA_00719 0.73 -0.3
775,304 - CCNA_00719 0.73 -0.7
775,304 - CCNA_00719 0.73 -0.0
775,304 - CCNA_00719 0.73 +0.2
775,314 - CCNA_00719 0.74 +0.5
775,336 + CCNA_00719 0.76 +0.8
775,364 - CCNA_00719 0.78 +0.5
775,423 + CCNA_00719 0.83 +0.6
775,423 + CCNA_00719 0.83 +1.8
775,423 + CCNA_00719 0.83 +0.7
775,423 + CCNA_00719 0.83 +0.3
775,423 + CCNA_00719 0.83 -1.2
775,423 + CCNA_00719 0.83 +0.3
775,423 + CCNA_00719 0.83 +0.0
775,423 + CCNA_00719 0.83 +1.8
775,431 - CCNA_00719 0.83 +0.5
775,431 - CCNA_00719 0.83 +0.9
775,431 - CCNA_00719 0.83 +1.1
775,431 - CCNA_00719 0.83 -1.3
775,431 - CCNA_00719 0.83 -0.8
775,433 + CCNA_00719 0.84 -1.3
775,441 - CCNA_00719 0.84 +0.8
775,522 + -0.2
775,549 + +0.4
775,562 + +0.2
775,713 + -1.0
775,721 - -0.6
775,721 - +1.1
775,721 - +0.8
775,771 + -0.3
775,809 + -1.4
775,817 - CCNA_00720 0.10 -0.9
775,819 + CCNA_00720 0.10 -0.5
775,820 - CCNA_00720 0.10 +0.0
775,827 - CCNA_00720 0.11 +0.4
775,829 - CCNA_00720 0.11 -0.6
775,839 + CCNA_00720 0.11 -0.0
775,839 + CCNA_00720 0.11 +0.0
775,847 - CCNA_00720 0.12 +0.8
775,847 - CCNA_00720 0.12 +0.1
775,847 - CCNA_00720 0.12 -1.0
775,847 - CCNA_00720 0.12 -0.3
775,903 + CCNA_00720 0.14 +1.5
775,916 - CCNA_00720 0.15 -1.9
775,916 - CCNA_00720 0.15 -0.1
775,921 - CCNA_00720 0.15 +1.2
775,928 - CCNA_00720 0.15 -0.5
775,931 + CCNA_00720 0.15 -0.3
775,945 + CCNA_00720 0.16 -1.0
775,946 - CCNA_00720 0.16 -2.6
775,946 - CCNA_00720 0.16 -0.7
775,950 + CCNA_00720 0.16 -1.2
775,958 - CCNA_00720 0.17 -2.4
775,968 - CCNA_00720 0.17 +1.8
775,978 + CCNA_00720 0.18 +0.2
775,997 + CCNA_00720 0.18 -1.6
775,999 + CCNA_00720 0.18 +0.3
775,999 + CCNA_00720 0.18 -0.2
776,005 - CCNA_00720 0.19 -0.4
776,007 - CCNA_00720 0.19 -0.9
776,007 - CCNA_00720 0.19 +0.0
776,018 + CCNA_00720 0.19 -0.5
776,025 + CCNA_00720 0.20 -1.2
776,041 + CCNA_00720 0.20 -1.0
776,049 - CCNA_00720 0.21 -1.1
776,107 + CCNA_00720 0.23 -0.5
776,115 - CCNA_00720 0.24 -1.2
776,121 - CCNA_00720 0.24 +0.9
776,128 + CCNA_00720 0.24 -1.4
776,136 - CCNA_00720 0.25 -1.4
776,231 + CCNA_00720 0.29 +0.3
776,231 + CCNA_00720 0.29 +1.8
776,239 - CCNA_00720 0.29 -0.6
776,239 - CCNA_00720 0.29 +0.8
776,241 + CCNA_00720 0.30 +0.4
776,259 + CCNA_00720 0.30 -0.3
776,259 + CCNA_00720 0.30 -0.7
776,266 + CCNA_00720 0.31 -0.1
776,303 + CCNA_00720 0.32 +1.5
776,349 - CCNA_00720 0.35 -0.4
776,386 + CCNA_00720 0.36 -0.5
776,415 - CCNA_00720 0.38 +0.6
776,472 + CCNA_00720 0.40 -0.1
776,551 - CCNA_00720 0.44 +0.7
776,564 - CCNA_00720 0.44 +0.5
776,593 + CCNA_00720 0.46 -0.2
776,593 + CCNA_00720 0.46 +0.4
776,593 + CCNA_00720 0.46 +0.8
776,615 + CCNA_00720 0.47 -1.6

Or see this region's nucleotide sequence