Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00699 and CCNA_00700 are separated by 718 nucleotides CCNA_00700 and CCNA_00701 are separated by 586 nucleotides CCNA_00701 and CCNA_03888 are separated by 144 nucleotides
CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380
_00699
CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024
_00700
CCNA_00701: CCNA_00701 - cold shock protein CspB, at 761,611 to 761,820
_00701
CCNA_03888: CCNA_03888 - hypothetical protein, at 761,965 to 762,324
_03888
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -1
0
1
2 at 758.353 kb on + strand at 758.375 kb on + strand at 758.495 kb on + strand at 758.495 kb on + strand at 758.503 kb on - strand at 758.526 kb on - strand at 758.533 kb on + strand at 758.541 kb on - strand at 758.541 kb on - strand at 758.572 kb on - strand at 759.065 kb on + strand at 759.067 kb on + strand at 759.075 kb on + strand at 759.077 kb on + strand at 759.077 kb on + strand at 759.077 kb on + strand at 759.085 kb on - strand at 759.085 kb on - strand at 759.112 kb on + strand at 759.112 kb on + strand at 759.112 kb on + strand at 759.197 kb on - strand at 759.213 kb on + strand at 759.213 kb on + strand at 759.218 kb on + strand at 759.226 kb on + strand at 759.226 kb on + strand at 759.283 kb on + strand at 759.289 kb on - strand at 759.292 kb on + strand, within CCNA_00700 at 759.300 kb on - strand, within CCNA_00700 at 759.300 kb on - strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.339 kb on + strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.347 kb on - strand, within CCNA_00700 at 759.352 kb on + strand, within CCNA_00700 at 759.360 kb on - strand, within CCNA_00700 at 759.360 kb on - strand, within CCNA_00700 at 759.399 kb on + strand, within CCNA_00700 at 759.424 kb on + strand, within CCNA_00700 at 759.465 kb on + strand, within CCNA_00700 at 759.465 kb on + strand, within CCNA_00700 at 759.489 kb on + strand, within CCNA_00700 at 759.489 kb on + strand, within CCNA_00700 at 759.494 kb on + strand, within CCNA_00700 at 759.494 kb on + strand, within CCNA_00700 at 759.522 kb on + strand, within CCNA_00700 at 759.525 kb on - strand, within CCNA_00700 at 759.573 kb on - strand, within CCNA_00700 at 759.638 kb on + strand, within CCNA_00700 at 759.646 kb on - strand, within CCNA_00700 at 759.646 kb on - strand, within CCNA_00700 at 759.671 kb on - strand, within CCNA_00700 at 759.702 kb on + strand, within CCNA_00700 at 759.734 kb on + strand, within CCNA_00700 at 759.752 kb on + strand, within CCNA_00700 at 759.754 kb on + strand, within CCNA_00700 at 759.756 kb on + strand, within CCNA_00700 at 759.764 kb on - strand, within CCNA_00700 at 759.764 kb on - strand, within CCNA_00700 at 759.784 kb on + strand, within CCNA_00700 at 759.787 kb on - strand, within CCNA_00700 at 759.792 kb on - strand, within CCNA_00700 at 759.792 kb on - strand, within CCNA_00700 at 759.807 kb on - strand, within CCNA_00700 at 759.827 kb on - strand, within CCNA_00700 at 759.867 kb on - strand, within CCNA_00700 at 759.867 kb on - strand, within CCNA_00700 at 759.867 kb on - strand, within CCNA_00700 at 759.872 kb on - strand, within CCNA_00700 at 759.882 kb on - strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.920 kb on + strand, within CCNA_00700 at 759.929 kb on - strand, within CCNA_00700 at 759.997 kb on + strand, within CCNA_00700 at 760.040 kb on - strand, within CCNA_00700 at 760.051 kb on + strand, within CCNA_00700 at 760.059 kb on - strand, within CCNA_00700 at 760.126 kb on + strand, within CCNA_00700 at 760.131 kb on + strand, within CCNA_00700 at 760.167 kb on - strand, within CCNA_00700 at 760.172 kb on + strand, within CCNA_00700 at 760.174 kb on - strand, within CCNA_00700 at 760.236 kb on + strand, within CCNA_00700 at 760.243 kb on + strand, within CCNA_00700 at 760.244 kb on - strand, within CCNA_00700 at 760.244 kb on - strand, within CCNA_00700 at 760.248 kb on + strand, within CCNA_00700 at 760.251 kb on - strand, within CCNA_00700 at 760.258 kb on + strand, within CCNA_00700 at 760.258 kb on + strand, within CCNA_00700 at 760.258 kb on + strand, within CCNA_00700 at 760.276 kb on - strand, within CCNA_00700 at 760.280 kb on + strand, within CCNA_00700 at 760.282 kb on - strand, within CCNA_00700 at 760.421 kb on + strand, within CCNA_00700 at 760.424 kb on - strand, within CCNA_00700 at 760.490 kb on - strand, within CCNA_00700 at 760.505 kb on + strand, within CCNA_00700 at 760.513 kb on - strand, within CCNA_00700 at 760.515 kb on + strand, within CCNA_00700 at 760.515 kb on + strand, within CCNA_00700 at 760.539 kb on + strand, within CCNA_00700 at 760.551 kb on + strand, within CCNA_00700 at 760.575 kb on - strand, within CCNA_00700 at 760.585 kb on - strand, within CCNA_00700 at 760.622 kb on - strand, within CCNA_00700 at 760.715 kb on - strand, within CCNA_00700 at 760.723 kb on + strand, within CCNA_00700 at 760.738 kb on + strand, within CCNA_00700 at 760.803 kb on + strand, within CCNA_00700 at 760.849 kb on - strand at 760.864 kb on + strand at 760.867 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.869 kb on + strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.877 kb on - strand at 760.919 kb on - strand at 760.950 kb on + strand at 760.953 kb on - strand at 760.953 kb on - strand at 760.958 kb on - strand at 761.028 kb on - strand at 761.033 kb on - strand at 761.042 kb on + strand at 761.043 kb on + strand at 761.050 kb on - strand at 761.050 kb on - strand at 761.068 kb on + strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.076 kb on - strand at 761.081 kb on + strand at 761.143 kb on - strand at 761.146 kb on + strand at 761.159 kb on - strand at 761.188 kb on + strand at 761.231 kb on + strand at 761.231 kb on - strand at 761.231 kb on - strand at 761.253 kb on - strand at 761.267 kb on + strand at 761.536 kb on + strand at 761.572 kb on + strand at 761.572 kb on + strand at 761.580 kb on - strand at 761.580 kb on - strand at 761.624 kb on + strand at 761.652 kb on - strand, within CCNA_00701 at 761.662 kb on + strand, within CCNA_00701 at 761.717 kb on + strand, within CCNA_00701 at 761.718 kb on - strand, within CCNA_00701 at 761.722 kb on + strand, within CCNA_00701 at 761.722 kb on + strand, within CCNA_00701 at 761.751 kb on - strand, within CCNA_00701 at 761.805 kb on + strand at 761.839 kb on - strand at 761.844 kb on - strand at 761.934 kb on - strand at 761.958 kb on - strand at 761.967 kb on - strand at 761.967 kb on - strand at 761.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 758,353 + +0.8 758,375 + +0.3 758,495 + +0.6 758,495 + +0.3 758,503 - +0.5 758,526 - +0.5 758,533 + -0.0 758,541 - +0.1 758,541 - -0.2 758,572 - +0.9 759,065 + +0.2 759,067 + -0.1 759,075 + +1.0 759,077 + -0.2 759,077 + +0.1 759,077 + +0.9 759,085 - -1.0 759,085 - -0.9 759,112 + -1.2 759,112 + +0.1 759,112 + +0.4 759,197 - +0.3 759,213 + +0.2 759,213 + +0.1 759,218 + -0.5 759,226 + +0.7 759,226 + +0.4 759,283 + +1.0 759,289 - +0.5 759,292 + CCNA_00700 0.10 +0.5 759,300 - CCNA_00700 0.10 +0.4 759,300 - CCNA_00700 0.10 +0.4 759,339 + CCNA_00700 0.12 -0.2 759,339 + CCNA_00700 0.12 +1.0 759,347 - CCNA_00700 0.13 +0.4 759,347 - CCNA_00700 0.13 -0.1 759,347 - CCNA_00700 0.13 -0.2 759,347 - CCNA_00700 0.13 +0.8 759,347 - CCNA_00700 0.13 -0.4 759,352 + CCNA_00700 0.13 +0.9 759,360 - CCNA_00700 0.14 +0.3 759,360 - CCNA_00700 0.14 -0.2 759,399 + CCNA_00700 0.16 +0.6 759,424 + CCNA_00700 0.17 -0.7 759,465 + CCNA_00700 0.19 -0.5 759,465 + CCNA_00700 0.19 +0.3 759,489 + CCNA_00700 0.20 +0.2 759,489 + CCNA_00700 0.20 +0.2 759,494 + CCNA_00700 0.21 +0.1 759,494 + CCNA_00700 0.21 +0.2 759,522 + CCNA_00700 0.22 +0.5 759,525 - CCNA_00700 0.22 +0.6 759,573 - CCNA_00700 0.25 -0.1 759,638 + CCNA_00700 0.28 +0.8 759,646 - CCNA_00700 0.28 +1.2 759,646 - CCNA_00700 0.28 -0.0 759,671 - CCNA_00700 0.30 +0.7 759,702 + CCNA_00700 0.31 -0.1 759,734 + CCNA_00700 0.33 +1.8 759,752 + CCNA_00700 0.34 +0.7 759,754 + CCNA_00700 0.34 -0.1 759,756 + CCNA_00700 0.34 +0.5 759,764 - CCNA_00700 0.35 +0.3 759,764 - CCNA_00700 0.35 +0.1 759,784 + CCNA_00700 0.36 -0.1 759,787 - CCNA_00700 0.36 -1.3 759,792 - CCNA_00700 0.36 +0.8 759,792 - CCNA_00700 0.36 +0.5 759,807 - CCNA_00700 0.37 +0.7 759,827 - CCNA_00700 0.38 +0.5 759,867 - CCNA_00700 0.40 +0.0 759,867 - CCNA_00700 0.40 +1.2 759,867 - CCNA_00700 0.40 -1.2 759,872 - CCNA_00700 0.40 -0.1 759,882 - CCNA_00700 0.41 +0.3 759,920 + CCNA_00700 0.43 -0.3 759,920 + CCNA_00700 0.43 +0.4 759,920 + CCNA_00700 0.43 -0.0 759,929 - CCNA_00700 0.43 +0.3 759,997 + CCNA_00700 0.47 +0.6 760,040 - CCNA_00700 0.49 +0.7 760,051 + CCNA_00700 0.49 -0.1 760,059 - CCNA_00700 0.50 -1.2 760,126 + CCNA_00700 0.53 +0.8 760,131 + CCNA_00700 0.54 +0.1 760,167 - CCNA_00700 0.55 +1.1 760,172 + CCNA_00700 0.56 -0.6 760,174 - CCNA_00700 0.56 +0.3 760,236 + CCNA_00700 0.59 -1.1 760,243 + CCNA_00700 0.59 +0.8 760,244 - CCNA_00700 0.59 +0.0 760,244 - CCNA_00700 0.59 -0.4 760,248 + CCNA_00700 0.60 -0.5 760,251 - CCNA_00700 0.60 -0.4 760,258 + CCNA_00700 0.60 +0.6 760,258 + CCNA_00700 0.60 +0.1 760,258 + CCNA_00700 0.60 +0.5 760,276 - CCNA_00700 0.61 -0.5 760,280 + CCNA_00700 0.61 +1.3 760,282 - CCNA_00700 0.61 +0.3 760,421 + CCNA_00700 0.69 +0.5 760,424 - CCNA_00700 0.69 +0.8 760,490 - CCNA_00700 0.72 +0.9 760,505 + CCNA_00700 0.73 -0.1 760,513 - CCNA_00700 0.73 -0.3 760,515 + CCNA_00700 0.74 +0.2 760,515 + CCNA_00700 0.74 +0.3 760,539 + CCNA_00700 0.75 -0.3 760,551 + CCNA_00700 0.75 -0.0 760,575 - CCNA_00700 0.77 +0.4 760,585 - CCNA_00700 0.77 +0.7 760,622 - CCNA_00700 0.79 -0.2 760,715 - CCNA_00700 0.84 +0.7 760,723 + CCNA_00700 0.84 +0.6 760,738 + CCNA_00700 0.85 -0.5 760,803 + CCNA_00700 0.88 -0.5 760,849 - -0.0 760,864 + -0.2 760,867 + +0.1 760,869 + +0.5 760,869 + +0.1 760,869 + +0.3 760,869 + -1.7 760,869 + +0.0 760,877 - +0.3 760,877 - +0.2 760,877 - +1.1 760,877 - +0.2 760,877 - +0.7 760,877 - +0.6 760,877 - +0.7 760,877 - -0.2 760,877 - -0.5 760,877 - +0.4 760,877 - -0.2 760,919 - -0.2 760,950 + +0.3 760,953 - +0.0 760,953 - +0.3 760,958 - +0.8 761,028 - +0.1 761,033 - -0.7 761,042 + -1.2 761,043 + -0.3 761,050 - +1.8 761,050 - -0.1 761,068 + -1.0 761,076 - -0.1 761,076 - +0.8 761,076 - +0.2 761,076 - +0.6 761,076 - -0.2 761,081 + -0.4 761,143 - -0.4 761,146 + -0.3 761,159 - +0.6 761,188 + +0.0 761,231 + -0.7 761,231 - +0.2 761,231 - -0.0 761,253 - -0.1 761,267 + -0.8 761,536 + -0.1 761,572 + -0.2 761,572 + -0.1 761,580 - +1.8 761,580 - -0.3 761,624 + -0.3 761,652 - CCNA_00701 0.20 -1.4 761,662 + CCNA_00701 0.24 +0.1 761,717 + CCNA_00701 0.50 +0.5 761,718 - CCNA_00701 0.51 -0.5 761,722 + CCNA_00701 0.53 -0.5 761,722 + CCNA_00701 0.53 +0.3 761,751 - CCNA_00701 0.67 -0.5 761,805 + +0.1 761,839 - +0.2 761,844 - -0.0 761,934 - -0.0 761,958 - +0.6 761,967 - +0.2 761,967 - -0.4 761,968 + -0.5
Or see this region's nucleotide sequence