Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00676 and CCNA_00677 are separated by 147 nucleotides CCNA_00677 and CCNA_00678 are separated by 4 nucleotides CCNA_00678 and CCNA_00679 are separated by 536 nucleotides
CCNA_00676: CCNA_00676 - PSK-family transcription factor, at 733,495 to 733,734
_00676
CCNA_00677: CCNA_00677 - LSU ribosomal protein L1P, at 733,882 to 734,571
_00677
CCNA_00678: CCNA_00678 - LSU ribosomal protein L11P, at 734,576 to 735,007
_00678
CCNA_00679: CCNA_00679 - transposase, IS116/IS110/IS902 family, at 735,544 to 736,479
_00679
Position (kb) 734
735
736 Strain fitness (log2 ratio) -1
0
1 at 733.585 kb on - strand, within CCNA_00676 at 733.607 kb on + strand, within CCNA_00676 at 733.607 kb on + strand, within CCNA_00676 at 733.607 kb on + strand, within CCNA_00676 at 733.615 kb on - strand, within CCNA_00676 at 733.615 kb on - strand, within CCNA_00676 at 733.615 kb on - strand, within CCNA_00676 at 733.627 kb on + strand, within CCNA_00676 at 733.777 kb on + strand at 733.788 kb on + strand at 733.820 kb on + strand at 733.893 kb on - strand at 733.915 kb on - strand at 735.162 kb on - strand at 735.173 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.198 kb on - strand at 735.229 kb on + strand at 735.255 kb on + strand at 735.266 kb on - strand at 735.283 kb on + strand at 735.283 kb on + strand at 735.288 kb on + strand at 735.291 kb on - strand at 735.291 kb on - strand at 735.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 733,585 - CCNA_00676 0.38 -1.4 733,607 + CCNA_00676 0.47 -0.7 733,607 + CCNA_00676 0.47 -0.9 733,607 + CCNA_00676 0.47 -0.9 733,615 - CCNA_00676 0.50 +0.2 733,615 - CCNA_00676 0.50 +0.9 733,615 - CCNA_00676 0.50 -0.1 733,627 + CCNA_00676 0.55 +1.0 733,777 + +0.6 733,788 + -0.7 733,820 + -1.5 733,893 - -1.2 733,915 - +0.1 735,162 - -1.0 735,173 + +0.7 735,188 + +0.1 735,188 + +0.1 735,188 + +0.5 735,188 + +0.1 735,188 + +0.0 735,188 + +1.3 735,188 + +0.5 735,188 + +0.1 735,188 + -0.0 735,188 + -0.1 735,196 - +0.3 735,196 - +0.8 735,196 - +0.3 735,196 - +0.3 735,196 - -0.6 735,196 - -0.2 735,196 - +0.3 735,196 - +0.3 735,198 - -0.0 735,229 + -0.6 735,255 + -0.4 735,266 - +0.7 735,283 + -1.2 735,283 + +0.0 735,288 + -0.1 735,291 - +0.6 735,291 - -1.1 735,291 - -0.0
Or see this region's nucleotide sequence