Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00583 and CCNA_00585 are separated by 118 nucleotides CCNA_00585 and CCNA_00586 are separated by 35 nucleotides
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
CCNA_00585: CCNA_00585 - hypothetical protein, at 613,324 to 614,379
_00585
CCNA_00586: CCNA_00586 - LytR/AlgR-family transcriptional regulator, at 614,415 to 615,746
_00586
Position (kb) 613
614
615 Strain fitness (log2 ratio) -2
-1
0
1
2 at 612.330 kb on + strand, within CCNA_00583 at 612.362 kb on - strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.398 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.440 kb on - strand, within CCNA_00583 at 612.451 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.467 kb on + strand, within CCNA_00583 at 612.482 kb on + strand, within CCNA_00583 at 612.485 kb on - strand, within CCNA_00583 at 612.491 kb on - strand, within CCNA_00583 at 612.509 kb on + strand, within CCNA_00583 at 612.517 kb on - strand, within CCNA_00583 at 612.517 kb on - strand, within CCNA_00583 at 612.568 kb on - strand, within CCNA_00583 at 612.577 kb on - strand, within CCNA_00583 at 612.613 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.649 kb on + strand, within CCNA_00583 at 612.661 kb on + strand, within CCNA_00583 at 612.662 kb on + strand, within CCNA_00583 at 612.667 kb on + strand, within CCNA_00583 at 612.679 kb on + strand, within CCNA_00583 at 612.795 kb on + strand, within CCNA_00583 at 612.804 kb on + strand, within CCNA_00583 at 612.812 kb on - strand, within CCNA_00583 at 612.816 kb on - strand, within CCNA_00583 at 612.841 kb on + strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.863 kb on + strand, within CCNA_00583 at 612.912 kb on + strand, within CCNA_00583 at 612.916 kb on - strand, within CCNA_00583 at 613.032 kb on - strand, within CCNA_00583 at 613.038 kb on + strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.053 kb on - strand, within CCNA_00583 at 613.084 kb on + strand at 613.110 kb on - strand at 613.155 kb on - strand at 613.164 kb on + strand at 613.164 kb on - strand at 613.394 kb on + strand at 613.402 kb on - strand at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.482 kb on + strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.497 kb on - strand, within CCNA_00585 at 613.506 kb on - strand, within CCNA_00585 at 613.511 kb on - strand, within CCNA_00585 at 613.575 kb on - strand, within CCNA_00585 at 613.577 kb on + strand, within CCNA_00585 at 613.580 kb on - strand, within CCNA_00585 at 613.598 kb on - strand, within CCNA_00585 at 613.614 kb on - strand, within CCNA_00585 at 613.653 kb on - strand, within CCNA_00585 at 613.687 kb on - strand, within CCNA_00585 at 613.744 kb on + strand, within CCNA_00585 at 613.777 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.788 kb on - strand, within CCNA_00585 at 613.790 kb on - strand, within CCNA_00585 at 613.872 kb on + strand, within CCNA_00585 at 613.872 kb on + strand, within CCNA_00585 at 613.882 kb on + strand, within CCNA_00585 at 613.908 kb on - strand, within CCNA_00585 at 613.911 kb on - strand, within CCNA_00585 at 613.914 kb on - strand, within CCNA_00585 at 613.928 kb on + strand, within CCNA_00585 at 613.979 kb on - strand, within CCNA_00585 at 614.000 kb on - strand, within CCNA_00585 at 614.038 kb on + strand, within CCNA_00585 at 614.041 kb on - strand, within CCNA_00585 at 614.046 kb on - strand, within CCNA_00585 at 614.054 kb on - strand, within CCNA_00585 at 614.077 kb on + strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.086 kb on + strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.094 kb on - strand, within CCNA_00585 at 614.096 kb on + strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.168 kb on - strand, within CCNA_00585 at 614.230 kb on - strand, within CCNA_00585 at 614.230 kb on - strand, within CCNA_00585 at 614.232 kb on + strand, within CCNA_00585 at 614.232 kb on + strand, within CCNA_00585 at 614.232 kb on + strand, within CCNA_00585 at 614.253 kb on + strand, within CCNA_00585 at 614.260 kb on + strand, within CCNA_00585 at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.280 kb on + strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.288 kb on - strand at 614.313 kb on + strand at 614.313 kb on + strand at 614.321 kb on - strand at 614.321 kb on - strand at 614.327 kb on + strand at 614.346 kb on - strand at 614.358 kb on - strand at 614.358 kb on - strand at 614.398 kb on - strand at 614.398 kb on - strand at 614.407 kb on + strand at 614.415 kb on - strand at 614.454 kb on + strand at 614.454 kb on + strand at 614.457 kb on - strand at 614.462 kb on - strand at 614.462 kb on - strand at 614.475 kb on + strand at 614.479 kb on - strand at 614.501 kb on - strand at 614.582 kb on - strand, within CCNA_00586 at 614.621 kb on - strand, within CCNA_00586 at 614.670 kb on - strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.672 kb on + strand, within CCNA_00586 at 614.680 kb on - strand, within CCNA_00586 at 614.680 kb on - strand, within CCNA_00586 at 614.688 kb on + strand, within CCNA_00586 at 614.689 kb on - strand, within CCNA_00586 at 614.703 kb on - strand, within CCNA_00586 at 614.782 kb on + strand, within CCNA_00586 at 614.787 kb on + strand, within CCNA_00586 at 614.787 kb on + strand, within CCNA_00586 at 614.790 kb on - strand, within CCNA_00586 at 614.790 kb on - strand, within CCNA_00586 at 614.790 kb on - strand, within CCNA_00586 at 614.795 kb on - strand, within CCNA_00586 at 614.813 kb on + strand, within CCNA_00586 at 614.855 kb on + strand, within CCNA_00586 at 614.910 kb on + strand, within CCNA_00586 at 614.922 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.923 kb on + strand, within CCNA_00586 at 614.931 kb on - strand, within CCNA_00586 at 614.933 kb on + strand, within CCNA_00586 at 614.943 kb on + strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.983 kb on - strand, within CCNA_00586 at 614.993 kb on - strand, within CCNA_00586 at 615.024 kb on - strand, within CCNA_00586 at 615.045 kb on - strand, within CCNA_00586 at 615.071 kb on - strand, within CCNA_00586 at 615.086 kb on + strand, within CCNA_00586 at 615.089 kb on - strand, within CCNA_00586 at 615.181 kb on - strand, within CCNA_00586 at 615.181 kb on - strand, within CCNA_00586 at 615.191 kb on + strand, within CCNA_00586 at 615.225 kb on - strand, within CCNA_00586 at 615.270 kb on + strand, within CCNA_00586 at 615.306 kb on + strand, within CCNA_00586 at 615.313 kb on - strand, within CCNA_00586 at 615.317 kb on + strand, within CCNA_00586 at 615.378 kb on - strand, within CCNA_00586
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 612,330 + CCNA_00583 0.36 -0.5 612,362 - CCNA_00583 0.38 -2.2 612,364 + CCNA_00583 0.38 -0.0 612,364 + CCNA_00583 0.38 +0.2 612,364 + CCNA_00583 0.38 -0.0 612,372 - CCNA_00583 0.39 -0.2 612,398 + CCNA_00583 0.41 +0.8 612,419 - CCNA_00583 0.42 -0.4 612,420 - CCNA_00583 0.43 -0.1 612,440 - CCNA_00583 0.44 -0.1 612,451 + CCNA_00583 0.45 -0.7 612,456 + CCNA_00583 0.45 -0.1 612,456 + CCNA_00583 0.45 -1.1 612,467 + CCNA_00583 0.46 +0.5 612,482 + CCNA_00583 0.47 -0.2 612,485 - CCNA_00583 0.47 -0.3 612,491 - CCNA_00583 0.48 +0.2 612,509 + CCNA_00583 0.49 -0.5 612,517 - CCNA_00583 0.50 -1.3 612,517 - CCNA_00583 0.50 +0.4 612,568 - CCNA_00583 0.53 -0.1 612,577 - CCNA_00583 0.54 -1.5 612,613 + CCNA_00583 0.57 +0.1 612,618 + CCNA_00583 0.57 +0.5 612,621 - CCNA_00583 0.57 +0.5 612,626 - CCNA_00583 0.58 +1.0 612,649 + CCNA_00583 0.59 +0.5 612,661 + CCNA_00583 0.60 -0.5 612,662 + CCNA_00583 0.60 +0.9 612,667 + CCNA_00583 0.61 -0.1 612,679 + CCNA_00583 0.61 -0.1 612,795 + CCNA_00583 0.70 -0.3 612,804 + CCNA_00583 0.71 +1.0 612,812 - CCNA_00583 0.71 -1.5 612,816 - CCNA_00583 0.71 -1.1 612,841 + CCNA_00583 0.73 -0.3 612,849 - CCNA_00583 0.74 -0.4 612,849 - CCNA_00583 0.74 -0.9 612,849 - CCNA_00583 0.74 +0.2 612,863 + CCNA_00583 0.75 -1.3 612,912 + CCNA_00583 0.79 +1.0 612,916 - CCNA_00583 0.79 +0.4 613,032 - CCNA_00583 0.87 -0.8 613,038 + CCNA_00583 0.88 -1.4 613,045 + CCNA_00583 0.88 -0.4 613,045 + CCNA_00583 0.88 -0.5 613,053 - CCNA_00583 0.89 -0.2 613,084 + -0.9 613,110 - -1.2 613,155 - +0.4 613,164 + -0.3 613,164 - -0.9 613,394 + -1.0 613,402 - -0.9 613,464 + CCNA_00585 0.13 -0.8 613,464 + CCNA_00585 0.13 +0.3 613,472 - CCNA_00585 0.14 +0.5 613,472 - CCNA_00585 0.14 -0.4 613,472 - CCNA_00585 0.14 +1.8 613,472 - CCNA_00585 0.14 -0.8 613,472 - CCNA_00585 0.14 -0.3 613,472 - CCNA_00585 0.14 -1.7 613,472 - CCNA_00585 0.14 +0.0 613,472 - CCNA_00585 0.14 -0.2 613,472 - CCNA_00585 0.14 +0.3 613,472 - CCNA_00585 0.14 -1.3 613,472 - CCNA_00585 0.14 -1.5 613,472 - CCNA_00585 0.14 -1.0 613,478 + CCNA_00585 0.15 -0.6 613,482 + CCNA_00585 0.15 -0.8 613,496 - CCNA_00585 0.16 +1.1 613,497 - CCNA_00585 0.16 +1.0 613,506 - CCNA_00585 0.17 -0.2 613,511 - CCNA_00585 0.18 -0.0 613,575 - CCNA_00585 0.24 -0.7 613,577 + CCNA_00585 0.24 -0.4 613,580 - CCNA_00585 0.24 +0.3 613,598 - CCNA_00585 0.26 -1.2 613,614 - CCNA_00585 0.27 -0.0 613,653 - CCNA_00585 0.31 -0.6 613,687 - CCNA_00585 0.34 -1.3 613,744 + CCNA_00585 0.40 -2.2 613,777 + CCNA_00585 0.43 -0.5 613,782 + CCNA_00585 0.43 -0.7 613,788 - CCNA_00585 0.44 -0.9 613,790 - CCNA_00585 0.44 -1.4 613,872 + CCNA_00585 0.52 -2.0 613,872 + CCNA_00585 0.52 -1.0 613,882 + CCNA_00585 0.53 +0.3 613,908 - CCNA_00585 0.55 -0.4 613,911 - CCNA_00585 0.56 -1.3 613,914 - CCNA_00585 0.56 -0.9 613,928 + CCNA_00585 0.57 +0.3 613,979 - CCNA_00585 0.62 +0.9 614,000 - CCNA_00585 0.64 +0.0 614,038 + CCNA_00585 0.68 -0.8 614,041 - CCNA_00585 0.68 -0.2 614,046 - CCNA_00585 0.68 -1.1 614,054 - CCNA_00585 0.69 +0.0 614,077 + CCNA_00585 0.71 -1.3 614,079 + CCNA_00585 0.71 -1.0 614,086 + CCNA_00585 0.72 -0.6 614,087 - CCNA_00585 0.72 -0.5 614,087 - CCNA_00585 0.72 +1.5 614,094 - CCNA_00585 0.73 -0.7 614,096 + CCNA_00585 0.73 +0.5 614,137 - CCNA_00585 0.77 +1.5 614,137 - CCNA_00585 0.77 +0.8 614,140 + CCNA_00585 0.77 +0.1 614,140 + CCNA_00585 0.77 -1.2 614,148 - CCNA_00585 0.78 -0.4 614,148 - CCNA_00585 0.78 -0.6 614,148 - CCNA_00585 0.78 +0.3 614,148 - CCNA_00585 0.78 +0.5 614,148 - CCNA_00585 0.78 -1.0 614,158 - CCNA_00585 0.79 -0.7 614,168 - CCNA_00585 0.80 -0.4 614,230 - CCNA_00585 0.86 -0.5 614,230 - CCNA_00585 0.86 +0.1 614,232 + CCNA_00585 0.86 -0.5 614,232 + CCNA_00585 0.86 -0.6 614,232 + CCNA_00585 0.86 -1.4 614,253 + CCNA_00585 0.88 -1.1 614,260 + CCNA_00585 0.89 -1.4 614,280 + -0.3 614,280 + -0.3 614,280 + -0.9 614,280 + +0.2 614,280 + +0.7 614,280 + -0.6 614,280 + -0.9 614,280 + -0.0 614,280 + +0.4 614,280 + +0.2 614,280 + +0.2 614,280 + -1.2 614,280 + +0.7 614,280 + -1.1 614,280 + +0.4 614,280 + -0.3 614,280 + +0.6 614,280 + +1.4 614,280 + +0.8 614,280 + +0.7 614,280 + -0.7 614,280 + +0.3 614,280 + +0.7 614,280 + -0.1 614,280 + -0.4 614,280 + +0.6 614,280 + +0.0 614,280 + -0.1 614,280 + +1.2 614,280 + -0.5 614,280 + +1.0 614,280 + +0.5 614,280 + +1.5 614,280 + +1.8 614,280 + +1.1 614,280 + -0.4 614,280 + +0.5 614,280 + +0.7 614,280 + +0.2 614,280 + -0.7 614,280 + +0.3 614,280 + +0.7 614,280 + +0.2 614,288 - -0.2 614,288 - +0.3 614,288 - -0.2 614,288 - +1.0 614,288 - -0.2 614,288 - +0.2 614,288 - +0.1 614,288 - -0.0 614,288 - -1.2 614,288 - -0.9 614,288 - +0.0 614,288 - -0.5 614,288 - +0.8 614,288 - +0.7 614,288 - +0.2 614,288 - -0.2 614,288 - +0.3 614,288 - -1.2 614,288 - -0.8 614,288 - +0.8 614,288 - -0.7 614,288 - -0.7 614,288 - -1.4 614,288 - +0.2 614,288 - -0.5 614,288 - +1.3 614,288 - -1.4 614,288 - +0.1 614,288 - +1.6 614,288 - -0.2 614,288 - -0.2 614,288 - -0.8 614,313 + +0.3 614,313 + +0.1 614,321 - -0.6 614,321 - -1.8 614,327 + +1.0 614,346 - -1.9 614,358 - +0.3 614,358 - -0.4 614,398 - +0.2 614,398 - -0.4 614,407 + -0.8 614,415 - -0.8 614,454 + +0.1 614,454 + -0.5 614,457 - -0.2 614,462 - +0.1 614,462 - -0.0 614,475 + +0.0 614,479 - -0.6 614,501 - +0.4 614,582 - CCNA_00586 0.13 +0.8 614,621 - CCNA_00586 0.15 +0.5 614,670 - CCNA_00586 0.19 -0.7 614,672 + CCNA_00586 0.19 +0.6 614,672 + CCNA_00586 0.19 -0.2 614,680 - CCNA_00586 0.20 +0.3 614,680 - CCNA_00586 0.20 -0.2 614,688 + CCNA_00586 0.20 -1.9 614,689 - CCNA_00586 0.21 -0.3 614,703 - CCNA_00586 0.22 +0.1 614,782 + CCNA_00586 0.28 -0.3 614,787 + CCNA_00586 0.28 -0.3 614,787 + CCNA_00586 0.28 +0.0 614,790 - CCNA_00586 0.28 -0.1 614,790 - CCNA_00586 0.28 -0.0 614,790 - CCNA_00586 0.28 -0.1 614,795 - CCNA_00586 0.29 -1.3 614,813 + CCNA_00586 0.30 -1.3 614,855 + CCNA_00586 0.33 -0.0 614,910 + CCNA_00586 0.37 -0.5 614,922 + CCNA_00586 0.38 +0.9 614,923 + CCNA_00586 0.38 +0.6 614,923 + CCNA_00586 0.38 +0.2 614,931 - CCNA_00586 0.39 -0.6 614,933 + CCNA_00586 0.39 +0.3 614,943 + CCNA_00586 0.40 +0.6 614,951 - CCNA_00586 0.40 +0.1 614,951 - CCNA_00586 0.40 +0.1 614,951 - CCNA_00586 0.40 +0.8 614,983 - CCNA_00586 0.43 +0.6 614,993 - CCNA_00586 0.43 +0.4 615,024 - CCNA_00586 0.46 +0.5 615,045 - CCNA_00586 0.47 -0.6 615,071 - CCNA_00586 0.49 -2.0 615,086 + CCNA_00586 0.50 -0.0 615,089 - CCNA_00586 0.51 +0.5 615,181 - CCNA_00586 0.58 +0.8 615,181 - CCNA_00586 0.58 +0.2 615,191 + CCNA_00586 0.58 -0.4 615,225 - CCNA_00586 0.61 -0.4 615,270 + CCNA_00586 0.64 +0.6 615,306 + CCNA_00586 0.67 +0.4 615,313 - CCNA_00586 0.67 +0.4 615,317 + CCNA_00586 0.68 -0.7 615,378 - CCNA_00586 0.72 -0.0
Or see this region's nucleotide sequence