Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00551 and CCNA_00552 are separated by 255 nucleotides CCNA_00552 and CCNA_00553 overlap by 4 nucleotides CCNA_00553 and CCNA_00554 are separated by 65 nucleotides CCNA_00554 and CCNA_00555 are separated by 72 nucleotides
CCNA_00551: CCNA_00551 - hypothetical protein, at 568,260 to 568,700
_00551
CCNA_00552: CCNA_00552 - cupin superfamily protein, at 568,956 to 569,426
_00552
CCNA_00553: CCNA_00553 - hydroxyacylglutathione hydrolase, at 569,423 to 570,172
_00553
CCNA_00554: CCNA_00554 - methyltransferase, at 570,238 to 571,044
_00554
CCNA_00555: CCNA_00555 - nitrogen regulatory protein P-II, at 571,117 to 571,461
_00555
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 568.450 kb on - strand, within CCNA_00551 at 568.457 kb on + strand, within CCNA_00551 at 568.495 kb on - strand, within CCNA_00551 at 568.550 kb on + strand, within CCNA_00551 at 568.558 kb on - strand, within CCNA_00551 at 568.596 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.601 kb on + strand, within CCNA_00551 at 568.608 kb on + strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.609 kb on - strand, within CCNA_00551 at 568.633 kb on + strand, within CCNA_00551 at 568.634 kb on - strand, within CCNA_00551 at 568.691 kb on + strand at 568.691 kb on + strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.699 kb on - strand at 568.758 kb on - strand at 568.785 kb on + strand at 568.857 kb on - strand at 568.866 kb on + strand at 568.879 kb on - strand at 568.884 kb on + strand at 568.888 kb on + strand at 568.896 kb on - strand at 568.896 kb on - strand at 568.913 kb on + strand at 568.918 kb on + strand at 568.921 kb on - strand at 568.926 kb on - strand at 568.926 kb on - strand at 568.930 kb on + strand at 568.970 kb on - strand at 568.972 kb on + strand at 568.980 kb on - strand at 568.980 kb on - strand at 569.039 kb on + strand, within CCNA_00552 at 569.042 kb on - strand, within CCNA_00552 at 569.073 kb on + strand, within CCNA_00552 at 569.080 kb on + strand, within CCNA_00552 at 569.094 kb on - strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.117 kb on + strand, within CCNA_00552 at 569.125 kb on - strand, within CCNA_00552 at 569.125 kb on - strand, within CCNA_00552 at 569.125 kb on - strand, within CCNA_00552 at 569.129 kb on + strand, within CCNA_00552 at 569.132 kb on + strand, within CCNA_00552 at 569.137 kb on - strand, within CCNA_00552 at 569.205 kb on + strand, within CCNA_00552 at 569.205 kb on + strand, within CCNA_00552 at 569.213 kb on - strand, within CCNA_00552 at 569.226 kb on + strand, within CCNA_00552 at 569.226 kb on + strand, within CCNA_00552 at 569.234 kb on - strand, within CCNA_00552 at 569.236 kb on - strand, within CCNA_00552 at 569.238 kb on + strand, within CCNA_00552 at 569.238 kb on + strand, within CCNA_00552 at 569.241 kb on - strand, within CCNA_00552 at 569.241 kb on - strand, within CCNA_00552 at 569.267 kb on - strand, within CCNA_00552 at 569.279 kb on - strand, within CCNA_00552 at 569.334 kb on - strand, within CCNA_00552 at 569.359 kb on - strand, within CCNA_00552 at 569.396 kb on + strand at 569.402 kb on + strand at 569.404 kb on - strand at 569.404 kb on - strand at 569.404 kb on - strand at 569.410 kb on - strand at 569.428 kb on + strand at 569.436 kb on - strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.438 kb on + strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.446 kb on - strand at 569.493 kb on - strand at 569.498 kb on - strand, within CCNA_00553 at 569.508 kb on - strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.589 kb on + strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.597 kb on - strand, within CCNA_00553 at 569.602 kb on + strand, within CCNA_00553 at 569.626 kb on - strand, within CCNA_00553 at 569.655 kb on + strand, within CCNA_00553 at 569.655 kb on + strand, within CCNA_00553 at 569.663 kb on - strand, within CCNA_00553 at 569.680 kb on - strand, within CCNA_00553 at 569.712 kb on + strand, within CCNA_00553 at 569.726 kb on + strand, within CCNA_00553 at 569.739 kb on + strand, within CCNA_00553 at 569.747 kb on - strand, within CCNA_00553 at 569.759 kb on + strand, within CCNA_00553 at 569.759 kb on + strand, within CCNA_00553 at 569.767 kb on - strand, within CCNA_00553 at 569.877 kb on + strand, within CCNA_00553 at 569.881 kb on + strand, within CCNA_00553 at 569.881 kb on + strand, within CCNA_00553 at 569.889 kb on - strand, within CCNA_00553 at 569.901 kb on + strand, within CCNA_00553 at 569.906 kb on + strand, within CCNA_00553 at 569.906 kb on + strand, within CCNA_00553 at 569.914 kb on - strand, within CCNA_00553 at 569.990 kb on - strand, within CCNA_00553 at 570.012 kb on + strand, within CCNA_00553 at 570.016 kb on + strand, within CCNA_00553 at 570.057 kb on - strand, within CCNA_00553 at 570.077 kb on - strand, within CCNA_00553 at 570.095 kb on - strand, within CCNA_00553 at 570.107 kb on - strand at 570.169 kb on + strand at 570.177 kb on - strand at 570.177 kb on - strand at 570.177 kb on - strand at 570.185 kb on + strand at 570.203 kb on + strand at 570.211 kb on - strand at 570.250 kb on - strand at 570.265 kb on + strand at 570.267 kb on + strand at 570.267 kb on + strand at 570.288 kb on - strand at 570.326 kb on - strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.327 kb on + strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.335 kb on - strand, within CCNA_00554 at 570.369 kb on - strand, within CCNA_00554 at 570.369 kb on - strand, within CCNA_00554 at 570.389 kb on - strand, within CCNA_00554 at 570.433 kb on + strand, within CCNA_00554 at 570.445 kb on + strand, within CCNA_00554 at 570.457 kb on - strand, within CCNA_00554 at 570.510 kb on + strand, within CCNA_00554 at 570.512 kb on + strand, within CCNA_00554 at 570.518 kb on - strand, within CCNA_00554 at 570.518 kb on - strand, within CCNA_00554 at 570.631 kb on + strand, within CCNA_00554 at 570.649 kb on - strand, within CCNA_00554 at 570.656 kb on - strand, within CCNA_00554 at 570.680 kb on + strand, within CCNA_00554 at 570.700 kb on - strand, within CCNA_00554 at 570.743 kb on - strand, within CCNA_00554 at 570.752 kb on + strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.760 kb on - strand, within CCNA_00554 at 570.797 kb on - strand, within CCNA_00554 at 570.805 kb on - strand, within CCNA_00554 at 570.806 kb on + strand, within CCNA_00554 at 570.807 kb on - strand, within CCNA_00554 at 570.821 kb on + strand, within CCNA_00554 at 570.821 kb on + strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.824 kb on - strand, within CCNA_00554 at 570.827 kb on + strand, within CCNA_00554 at 570.829 kb on - strand, within CCNA_00554 at 570.871 kb on + strand, within CCNA_00554 at 570.891 kb on + strand, within CCNA_00554 at 570.894 kb on - strand, within CCNA_00554 at 570.945 kb on - strand, within CCNA_00554 at 570.947 kb on + strand, within CCNA_00554 at 570.950 kb on - strand, within CCNA_00554 at 570.950 kb on - strand, within CCNA_00554 at 570.955 kb on - strand, within CCNA_00554 at 570.996 kb on + strand at 570.996 kb on + strand at 570.999 kb on - strand at 570.999 kb on - strand at 571.004 kb on - strand at 571.026 kb on + strand at 571.031 kb on + strand at 571.031 kb on + strand at 571.031 kb on + strand at 571.039 kb on - strand at 571.039 kb on - strand at 571.041 kb on - strand at 571.075 kb on + strand at 571.102 kb on + strand at 571.102 kb on + strand at 571.115 kb on + strand at 571.151 kb on + strand at 571.164 kb on + strand, within CCNA_00555
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 568,450 - CCNA_00551 0.43 -0.8 568,457 + CCNA_00551 0.45 +0.8 568,495 - CCNA_00551 0.53 -0.6 568,550 + CCNA_00551 0.66 +1.0 568,558 - CCNA_00551 0.68 +0.1 568,596 + CCNA_00551 0.76 +0.4 568,601 + CCNA_00551 0.77 +0.8 568,601 + CCNA_00551 0.77 -0.7 568,601 + CCNA_00551 0.77 -1.1 568,601 + CCNA_00551 0.77 -0.5 568,601 + CCNA_00551 0.77 -1.5 568,608 + CCNA_00551 0.79 -0.5 568,609 - CCNA_00551 0.79 +0.6 568,609 - CCNA_00551 0.79 -0.0 568,609 - CCNA_00551 0.79 -0.1 568,609 - CCNA_00551 0.79 +0.9 568,609 - CCNA_00551 0.79 -0.6 568,609 - CCNA_00551 0.79 -0.4 568,633 + CCNA_00551 0.85 +0.4 568,634 - CCNA_00551 0.85 -0.3 568,691 + -0.5 568,691 + +0.8 568,699 - +0.5 568,699 - -0.6 568,699 - +2.0 568,699 - -0.1 568,699 - +0.1 568,699 - +0.6 568,758 - +0.1 568,785 + -0.7 568,857 - +0.1 568,866 + -0.1 568,879 - +1.6 568,884 + -2.0 568,888 + +0.1 568,896 - +0.0 568,896 - +0.1 568,913 + +0.2 568,918 + +0.1 568,921 - +0.1 568,926 - -1.1 568,926 - +0.2 568,930 + +0.1 568,970 - +0.8 568,972 + +0.5 568,980 - +0.1 568,980 - -0.1 569,039 + CCNA_00552 0.18 +0.2 569,042 - CCNA_00552 0.18 +0.5 569,073 + CCNA_00552 0.25 -0.3 569,080 + CCNA_00552 0.26 +0.1 569,094 - CCNA_00552 0.29 -0.2 569,117 + CCNA_00552 0.34 +1.1 569,117 + CCNA_00552 0.34 +1.3 569,117 + CCNA_00552 0.34 +0.4 569,125 - CCNA_00552 0.36 -0.5 569,125 - CCNA_00552 0.36 +0.2 569,125 - CCNA_00552 0.36 -0.1 569,129 + CCNA_00552 0.37 +0.4 569,132 + CCNA_00552 0.37 -1.4 569,137 - CCNA_00552 0.38 -0.3 569,205 + CCNA_00552 0.53 -2.3 569,205 + CCNA_00552 0.53 -0.8 569,213 - CCNA_00552 0.55 -0.0 569,226 + CCNA_00552 0.57 +0.3 569,226 + CCNA_00552 0.57 +0.6 569,234 - CCNA_00552 0.59 -0.1 569,236 - CCNA_00552 0.59 +0.1 569,238 + CCNA_00552 0.60 -0.3 569,238 + CCNA_00552 0.60 +0.6 569,241 - CCNA_00552 0.61 +1.4 569,241 - CCNA_00552 0.61 +0.8 569,267 - CCNA_00552 0.66 -0.6 569,279 - CCNA_00552 0.69 -0.2 569,334 - CCNA_00552 0.80 +0.3 569,359 - CCNA_00552 0.86 +0.1 569,396 + -0.2 569,402 + -0.4 569,404 - +0.6 569,404 - -0.4 569,404 - +0.8 569,410 - +0.4 569,428 + -1.5 569,436 - -1.2 569,438 + +0.8 569,438 + -0.1 569,438 + -0.0 569,438 + +0.3 569,438 + -0.1 569,446 - +1.3 569,446 - +0.7 569,446 - +0.6 569,446 - +0.7 569,446 - +0.5 569,446 - +0.2 569,493 - -0.2 569,498 - CCNA_00553 0.10 +1.0 569,508 - CCNA_00553 0.11 +0.6 569,589 + CCNA_00553 0.22 +0.2 569,589 + CCNA_00553 0.22 -0.6 569,589 + CCNA_00553 0.22 -0.5 569,589 + CCNA_00553 0.22 +0.5 569,597 - CCNA_00553 0.23 -0.8 569,597 - CCNA_00553 0.23 -0.9 569,597 - CCNA_00553 0.23 +0.4 569,602 + CCNA_00553 0.24 +0.3 569,626 - CCNA_00553 0.27 +0.5 569,655 + CCNA_00553 0.31 +1.2 569,655 + CCNA_00553 0.31 +0.2 569,663 - CCNA_00553 0.32 -1.0 569,680 - CCNA_00553 0.34 +0.0 569,712 + CCNA_00553 0.39 -1.0 569,726 + CCNA_00553 0.40 -0.6 569,739 + CCNA_00553 0.42 -0.2 569,747 - CCNA_00553 0.43 -1.1 569,759 + CCNA_00553 0.45 -0.4 569,759 + CCNA_00553 0.45 -1.0 569,767 - CCNA_00553 0.46 -0.5 569,877 + CCNA_00553 0.61 -0.5 569,881 + CCNA_00553 0.61 -0.4 569,881 + CCNA_00553 0.61 +0.4 569,889 - CCNA_00553 0.62 +0.0 569,901 + CCNA_00553 0.64 +0.4 569,906 + CCNA_00553 0.64 -0.5 569,906 + CCNA_00553 0.64 +0.7 569,914 - CCNA_00553 0.65 -0.1 569,990 - CCNA_00553 0.76 -0.2 570,012 + CCNA_00553 0.79 -0.2 570,016 + CCNA_00553 0.79 +0.1 570,057 - CCNA_00553 0.85 +0.5 570,077 - CCNA_00553 0.87 +1.2 570,095 - CCNA_00553 0.90 -0.3 570,107 - -1.0 570,169 + -0.3 570,177 - +1.2 570,177 - -0.4 570,177 - +0.3 570,185 + +0.4 570,203 + +0.3 570,211 - -1.0 570,250 - +0.6 570,265 + +0.4 570,267 + -1.5 570,267 + +0.2 570,288 - -0.5 570,326 - CCNA_00554 0.11 -0.6 570,327 + CCNA_00554 0.11 +0.2 570,327 + CCNA_00554 0.11 +0.0 570,327 + CCNA_00554 0.11 +0.5 570,335 - CCNA_00554 0.12 -0.3 570,335 - CCNA_00554 0.12 -0.5 570,369 - CCNA_00554 0.16 +0.3 570,369 - CCNA_00554 0.16 -0.2 570,389 - CCNA_00554 0.19 +1.1 570,433 + CCNA_00554 0.24 +0.7 570,445 + CCNA_00554 0.26 +0.4 570,457 - CCNA_00554 0.27 -0.4 570,510 + CCNA_00554 0.34 +0.0 570,512 + CCNA_00554 0.34 +0.1 570,518 - CCNA_00554 0.35 +0.0 570,518 - CCNA_00554 0.35 -0.9 570,631 + CCNA_00554 0.49 -0.4 570,649 - CCNA_00554 0.51 -0.9 570,656 - CCNA_00554 0.52 +0.2 570,680 + CCNA_00554 0.55 +1.6 570,700 - CCNA_00554 0.57 +0.3 570,743 - CCNA_00554 0.63 -1.1 570,752 + CCNA_00554 0.64 +0.5 570,760 - CCNA_00554 0.65 +0.6 570,760 - CCNA_00554 0.65 -0.1 570,760 - CCNA_00554 0.65 -0.1 570,760 - CCNA_00554 0.65 +0.6 570,760 - CCNA_00554 0.65 -0.4 570,797 - CCNA_00554 0.69 +0.4 570,805 - CCNA_00554 0.70 -1.6 570,806 + CCNA_00554 0.70 +1.0 570,807 - CCNA_00554 0.71 -0.0 570,821 + CCNA_00554 0.72 +0.6 570,821 + CCNA_00554 0.72 -0.6 570,824 - CCNA_00554 0.73 +0.4 570,824 - CCNA_00554 0.73 +0.6 570,824 - CCNA_00554 0.73 -0.2 570,824 - CCNA_00554 0.73 -0.4 570,827 + CCNA_00554 0.73 +0.1 570,829 - CCNA_00554 0.73 -0.2 570,871 + CCNA_00554 0.78 -0.1 570,891 + CCNA_00554 0.81 +0.4 570,894 - CCNA_00554 0.81 +0.5 570,945 - CCNA_00554 0.88 -0.1 570,947 + CCNA_00554 0.88 +0.9 570,950 - CCNA_00554 0.88 +0.1 570,950 - CCNA_00554 0.88 -1.0 570,955 - CCNA_00554 0.89 -1.3 570,996 + +0.5 570,996 + +0.5 570,999 - +0.2 570,999 - -0.1 571,004 - +0.1 571,026 + -0.5 571,031 + +0.1 571,031 + +0.6 571,031 + +1.4 571,039 - +0.6 571,039 - +0.2 571,041 - +0.7 571,075 + +0.3 571,102 + -0.7 571,102 + +0.5 571,115 + -0.1 571,151 + -0.4 571,164 + CCNA_00555 0.14 +0.5
Or see this region's nucleotide sequence