Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00475 and CCNA_00476 overlap by 4 nucleotides CCNA_00476 and CCNA_00477 are separated by 380 nucleotides CCNA_00477 and CCNA_00478 are separated by 121 nucleotides
CCNA_00475: CCNA_00475 - bacterial conjugation protein, ATP binding domain trwB, at 491,512 to 493,329
_00475
CCNA_00476: CCNA_00476 - hypothetical protein, at 493,326 to 493,709
_00476
CCNA_00477: CCNA_00477 - excisionase, at 494,090 to 494,284
_00477
CCNA_00478: CCNA_00478 - hypothetical protein, at 494,406 to 495,143
_00478
Position (kb) 493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 492.342 kb on + strand, within CCNA_00475 at 492.350 kb on - strand, within CCNA_00475 at 492.364 kb on + strand, within CCNA_00475 at 492.380 kb on + strand, within CCNA_00475 at 492.388 kb on - strand, within CCNA_00475 at 492.388 kb on - strand, within CCNA_00475 at 492.388 kb on - strand, within CCNA_00475 at 492.389 kb on - strand, within CCNA_00475 at 492.421 kb on - strand, within CCNA_00475 at 492.425 kb on + strand, within CCNA_00475 at 492.431 kb on - strand, within CCNA_00475 at 492.431 kb on - strand, within CCNA_00475 at 492.432 kb on + strand, within CCNA_00475 at 492.443 kb on + strand, within CCNA_00475 at 492.465 kb on - strand, within CCNA_00475 at 492.488 kb on - strand, within CCNA_00475 at 492.523 kb on + strand, within CCNA_00475 at 492.532 kb on + strand, within CCNA_00475 at 492.537 kb on + strand, within CCNA_00475 at 492.624 kb on + strand, within CCNA_00475 at 492.626 kb on - strand, within CCNA_00475 at 492.659 kb on + strand, within CCNA_00475 at 492.659 kb on + strand, within CCNA_00475 at 492.746 kb on - strand, within CCNA_00475 at 492.769 kb on - strand, within CCNA_00475 at 492.802 kb on - strand, within CCNA_00475 at 492.814 kb on + strand, within CCNA_00475 at 492.817 kb on - strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.819 kb on + strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.827 kb on - strand, within CCNA_00475 at 492.834 kb on + strand, within CCNA_00475 at 492.872 kb on - strand, within CCNA_00475 at 492.907 kb on - strand, within CCNA_00475 at 492.938 kb on + strand, within CCNA_00475 at 492.944 kb on + strand, within CCNA_00475 at 492.946 kb on - strand, within CCNA_00475 at 492.950 kb on + strand, within CCNA_00475 at 492.960 kb on + strand, within CCNA_00475 at 492.960 kb on + strand, within CCNA_00475 at 493.051 kb on - strand, within CCNA_00475 at 493.053 kb on + strand, within CCNA_00475 at 493.054 kb on + strand, within CCNA_00475 at 493.056 kb on + strand, within CCNA_00475 at 493.056 kb on - strand, within CCNA_00475 at 493.062 kb on - strand, within CCNA_00475 at 493.062 kb on - strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.071 kb on + strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.079 kb on - strand, within CCNA_00475 at 493.093 kb on + strand, within CCNA_00475 at 493.128 kb on + strand, within CCNA_00475 at 493.139 kb on + strand, within CCNA_00475 at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.156 kb on + strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.164 kb on - strand at 493.173 kb on + strand at 493.173 kb on + strand at 493.173 kb on + strand at 493.173 kb on + strand at 493.191 kb on + strand at 493.191 kb on + strand at 493.234 kb on + strand at 493.234 kb on + strand at 493.242 kb on - strand at 493.265 kb on + strand at 493.270 kb on + strand at 493.270 kb on + strand at 493.270 kb on + strand at 493.270 kb on + strand at 493.277 kb on - strand at 493.278 kb on - strand at 493.278 kb on - strand at 493.278 kb on - strand at 493.278 kb on - strand at 493.282 kb on + strand at 493.290 kb on - strand at 493.314 kb on + strand at 493.356 kb on - strand at 493.362 kb on - strand at 493.429 kb on + strand, within CCNA_00476 at 493.429 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.446 kb on + strand, within CCNA_00476 at 493.454 kb on - strand, within CCNA_00476 at 493.462 kb on + strand, within CCNA_00476 at 493.512 kb on - strand, within CCNA_00476 at 493.520 kb on + strand, within CCNA_00476 at 493.528 kb on - strand, within CCNA_00476 at 493.653 kb on + strand, within CCNA_00476 at 493.661 kb on - strand, within CCNA_00476 at 493.734 kb on - strand at 493.790 kb on + strand at 493.790 kb on + strand at 493.842 kb on + strand at 493.858 kb on + strand at 493.858 kb on + strand at 493.858 kb on + strand at 493.858 kb on + strand at 493.866 kb on - strand at 493.866 kb on - strand at 493.866 kb on - strand at 493.903 kb on + strand at 493.937 kb on + strand at 493.937 kb on + strand at 493.937 kb on + strand at 493.951 kb on + strand at 493.951 kb on + strand at 493.951 kb on + strand at 493.959 kb on - strand at 493.959 kb on - strand at 493.959 kb on - strand at 493.959 kb on - strand at 493.959 kb on - strand at 493.960 kb on + strand at 493.961 kb on - strand at 493.968 kb on - strand at 493.968 kb on - strand at 493.988 kb on + strand at 493.995 kb on + strand at 493.995 kb on + strand at 493.995 kb on + strand at 493.995 kb on + strand at 494.003 kb on - strand at 494.003 kb on - strand at 494.003 kb on - strand at 494.008 kb on - strand at 494.038 kb on + strand at 494.052 kb on + strand at 494.131 kb on - strand, within CCNA_00477 at 494.131 kb on - strand, within CCNA_00477 at 494.135 kb on + strand, within CCNA_00477 at 494.136 kb on - strand, within CCNA_00477 at 494.143 kb on - strand, within CCNA_00477 at 494.151 kb on - strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.181 kb on + strand, within CCNA_00477 at 494.183 kb on + strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.189 kb on - strand, within CCNA_00477 at 494.193 kb on + strand, within CCNA_00477 at 494.198 kb on + strand, within CCNA_00477 at 494.201 kb on - strand, within CCNA_00477 at 494.217 kb on + strand, within CCNA_00477 at 494.222 kb on + strand, within CCNA_00477 at 494.223 kb on + strand, within CCNA_00477 at 494.231 kb on - strand, within CCNA_00477 at 494.231 kb on - strand, within CCNA_00477 at 494.233 kb on + strand, within CCNA_00477 at 494.243 kb on + strand, within CCNA_00477 at 494.243 kb on + strand, within CCNA_00477 at 494.251 kb on - strand, within CCNA_00477 at 494.266 kb on - strand at 494.275 kb on - strand at 494.292 kb on + strand at 494.292 kb on + strand at 494.300 kb on - strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.321 kb on - strand at 494.321 kb on - strand at 494.348 kb on + strand at 494.370 kb on + strand at 494.373 kb on - strand at 494.378 kb on - strand at 494.384 kb on + strand at 494.403 kb on + strand at 494.411 kb on - strand at 494.411 kb on - strand at 494.428 kb on + strand at 494.428 kb on + strand at 494.428 kb on + strand at 494.428 kb on + strand at 494.428 kb on + strand at 494.436 kb on - strand at 494.448 kb on + strand at 494.453 kb on - strand at 494.464 kb on - strand at 494.491 kb on - strand, within CCNA_00478 at 494.506 kb on - strand, within CCNA_00478 at 494.540 kb on + strand, within CCNA_00478 at 494.572 kb on + strand, within CCNA_00478 at 494.593 kb on + strand, within CCNA_00478 at 494.594 kb on + strand, within CCNA_00478 at 494.602 kb on - strand, within CCNA_00478 at 494.605 kb on + strand, within CCNA_00478 at 494.616 kb on + strand, within CCNA_00478 at 494.616 kb on + strand, within CCNA_00478 at 494.616 kb on + strand, within CCNA_00478 at 494.624 kb on - strand, within CCNA_00478 at 494.624 kb on - strand, within CCNA_00478 at 494.624 kb on - strand, within CCNA_00478 at 494.639 kb on - strand, within CCNA_00478 at 494.646 kb on - strand, within CCNA_00478 at 494.674 kb on - strand, within CCNA_00478 at 494.676 kb on + strand, within CCNA_00478 at 494.676 kb on + strand, within CCNA_00478 at 494.685 kb on - strand, within CCNA_00478 at 494.703 kb on - strand, within CCNA_00478
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 492,342 + CCNA_00475 0.46 -0.3 492,350 - CCNA_00475 0.46 +0.3 492,364 + CCNA_00475 0.47 -1.2 492,380 + CCNA_00475 0.48 +1.1 492,388 - CCNA_00475 0.48 -0.6 492,388 - CCNA_00475 0.48 +0.5 492,388 - CCNA_00475 0.48 +0.1 492,389 - CCNA_00475 0.48 -0.2 492,421 - CCNA_00475 0.50 -0.4 492,425 + CCNA_00475 0.50 -0.8 492,431 - CCNA_00475 0.51 -0.9 492,431 - CCNA_00475 0.51 -0.6 492,432 + CCNA_00475 0.51 +0.4 492,443 + CCNA_00475 0.51 +0.7 492,465 - CCNA_00475 0.52 +0.4 492,488 - CCNA_00475 0.54 +0.2 492,523 + CCNA_00475 0.56 -0.0 492,532 + CCNA_00475 0.56 -0.1 492,537 + CCNA_00475 0.56 -0.5 492,624 + CCNA_00475 0.61 +0.1 492,626 - CCNA_00475 0.61 -0.6 492,659 + CCNA_00475 0.63 -0.1 492,659 + CCNA_00475 0.63 +0.3 492,746 - CCNA_00475 0.68 -2.3 492,769 - CCNA_00475 0.69 -1.8 492,802 - CCNA_00475 0.71 +0.1 492,814 + CCNA_00475 0.72 -0.7 492,817 - CCNA_00475 0.72 -0.9 492,819 + CCNA_00475 0.72 +0.1 492,819 + CCNA_00475 0.72 -0.0 492,819 + CCNA_00475 0.72 -0.2 492,819 + CCNA_00475 0.72 -0.4 492,819 + CCNA_00475 0.72 -0.5 492,819 + CCNA_00475 0.72 -0.9 492,819 + CCNA_00475 0.72 -0.2 492,827 - CCNA_00475 0.72 -1.1 492,827 - CCNA_00475 0.72 +0.3 492,827 - CCNA_00475 0.72 +0.2 492,827 - CCNA_00475 0.72 +1.2 492,834 + CCNA_00475 0.73 +0.5 492,872 - CCNA_00475 0.75 -0.8 492,907 - CCNA_00475 0.77 -0.1 492,938 + CCNA_00475 0.78 -1.1 492,944 + CCNA_00475 0.79 +0.1 492,946 - CCNA_00475 0.79 -0.7 492,950 + CCNA_00475 0.79 -0.3 492,960 + CCNA_00475 0.80 -0.9 492,960 + CCNA_00475 0.80 -0.5 493,051 - CCNA_00475 0.85 -0.3 493,053 + CCNA_00475 0.85 +0.2 493,054 + CCNA_00475 0.85 +1.1 493,056 + CCNA_00475 0.85 -0.8 493,056 - CCNA_00475 0.85 -0.5 493,062 - CCNA_00475 0.85 +1.3 493,062 - CCNA_00475 0.85 -1.6 493,071 + CCNA_00475 0.86 +0.3 493,071 + CCNA_00475 0.86 -1.9 493,071 + CCNA_00475 0.86 -0.2 493,071 + CCNA_00475 0.86 -0.2 493,071 + CCNA_00475 0.86 -0.8 493,079 - CCNA_00475 0.86 -0.2 493,079 - CCNA_00475 0.86 -0.1 493,079 - CCNA_00475 0.86 -0.7 493,079 - CCNA_00475 0.86 -0.6 493,079 - CCNA_00475 0.86 -1.0 493,079 - CCNA_00475 0.86 -0.0 493,093 + CCNA_00475 0.87 -2.5 493,128 + CCNA_00475 0.89 -3.2 493,139 + CCNA_00475 0.89 -0.5 493,156 + -0.8 493,156 + -2.0 493,156 + +1.2 493,156 + -0.9 493,156 + -1.0 493,156 + -1.3 493,156 + -1.5 493,156 + -1.2 493,156 + -0.1 493,156 + -0.6 493,156 + -0.6 493,156 + +0.3 493,156 + +0.4 493,156 + -1.7 493,156 + -1.3 493,156 + -0.7 493,156 + -0.1 493,164 - +0.3 493,164 - +1.0 493,164 - +1.5 493,164 - -0.6 493,164 - -0.2 493,164 - -1.7 493,164 - -1.5 493,164 - -0.8 493,164 - -0.6 493,164 - +0.1 493,164 - -0.9 493,164 - -0.1 493,164 - +0.5 493,164 - -0.5 493,164 - -0.9 493,164 - -1.0 493,164 - +0.4 493,164 - -0.5 493,164 - -1.6 493,173 + -1.5 493,173 + -0.3 493,173 + -1.5 493,173 + -1.0 493,191 + -1.1 493,191 + -0.2 493,234 + +1.1 493,234 + +1.1 493,242 - -0.6 493,265 + -1.0 493,270 + -1.6 493,270 + +1.0 493,270 + -0.6 493,270 + +0.3 493,277 - +0.1 493,278 - -0.4 493,278 - -1.8 493,278 - -0.1 493,278 - +0.1 493,282 + -0.3 493,290 - -0.6 493,314 + +0.0 493,356 - -0.3 493,362 - -0.3 493,429 + CCNA_00476 0.27 -0.5 493,429 + CCNA_00476 0.27 -0.4 493,446 + CCNA_00476 0.31 -0.1 493,446 + CCNA_00476 0.31 -0.5 493,446 + CCNA_00476 0.31 +0.1 493,446 + CCNA_00476 0.31 -0.4 493,454 - CCNA_00476 0.33 +0.7 493,462 + CCNA_00476 0.35 -0.0 493,512 - CCNA_00476 0.48 +0.1 493,520 + CCNA_00476 0.51 -1.5 493,528 - CCNA_00476 0.53 -1.2 493,653 + CCNA_00476 0.85 -0.6 493,661 - CCNA_00476 0.87 -0.6 493,734 - -0.1 493,790 + -1.2 493,790 + -0.1 493,842 + +0.6 493,858 + +0.9 493,858 + -1.1 493,858 + -0.5 493,858 + -0.1 493,866 - -2.3 493,866 - +1.4 493,866 - -0.3 493,903 + -0.1 493,937 + -0.4 493,937 + +0.4 493,937 + -0.6 493,951 + +0.3 493,951 + -0.1 493,951 + -0.3 493,959 - -0.4 493,959 - -0.5 493,959 - -1.5 493,959 - -0.1 493,959 - +0.4 493,960 + +0.9 493,961 - -0.1 493,968 - -1.0 493,968 - -0.2 493,988 + +0.2 493,995 + -0.8 493,995 + +0.3 493,995 + +0.1 493,995 + +0.5 494,003 - +0.6 494,003 - +0.1 494,003 - -1.3 494,008 - -0.4 494,038 + +0.8 494,052 + +0.3 494,131 - CCNA_00477 0.21 +0.4 494,131 - CCNA_00477 0.21 -0.5 494,135 + CCNA_00477 0.23 +0.5 494,136 - CCNA_00477 0.24 +0.0 494,143 - CCNA_00477 0.27 +0.4 494,151 - CCNA_00477 0.31 +0.3 494,181 + CCNA_00477 0.47 -0.2 494,181 + CCNA_00477 0.47 -0.3 494,181 + CCNA_00477 0.47 -1.5 494,183 + CCNA_00477 0.48 -0.1 494,189 - CCNA_00477 0.51 +0.0 494,189 - CCNA_00477 0.51 +0.6 494,189 - CCNA_00477 0.51 +0.1 494,189 - CCNA_00477 0.51 +0.3 494,193 + CCNA_00477 0.53 -0.6 494,198 + CCNA_00477 0.55 +1.2 494,201 - CCNA_00477 0.57 -0.6 494,217 + CCNA_00477 0.65 -0.6 494,222 + CCNA_00477 0.68 -0.3 494,223 + CCNA_00477 0.68 -2.5 494,231 - CCNA_00477 0.72 +1.7 494,231 - CCNA_00477 0.72 +0.7 494,233 + CCNA_00477 0.73 +0.4 494,243 + CCNA_00477 0.78 +0.1 494,243 + CCNA_00477 0.78 -0.2 494,251 - CCNA_00477 0.83 +0.4 494,266 - +1.5 494,275 - -0.0 494,292 + -0.0 494,292 + -1.0 494,300 - -0.1 494,313 + +0.3 494,313 + -0.4 494,313 + +1.1 494,313 + -0.3 494,313 + -0.1 494,321 - -0.7 494,321 - -0.5 494,348 + -1.5 494,370 + +0.6 494,373 - +0.5 494,378 - -0.3 494,384 + +0.0 494,403 + -0.0 494,411 - -0.4 494,411 - -0.1 494,428 + -1.3 494,428 + -0.0 494,428 + -1.0 494,428 + +0.4 494,428 + -1.3 494,436 - -0.1 494,448 + -0.6 494,453 - -0.5 494,464 - +0.1 494,491 - CCNA_00478 0.12 -0.9 494,506 - CCNA_00478 0.14 -0.8 494,540 + CCNA_00478 0.18 -0.3 494,572 + CCNA_00478 0.22 +0.1 494,593 + CCNA_00478 0.25 -1.7 494,594 + CCNA_00478 0.25 +2.4 494,602 - CCNA_00478 0.27 -2.0 494,605 + CCNA_00478 0.27 -0.9 494,616 + CCNA_00478 0.28 +0.7 494,616 + CCNA_00478 0.28 +1.0 494,616 + CCNA_00478 0.28 -0.6 494,624 - CCNA_00478 0.30 -0.6 494,624 - CCNA_00478 0.30 -0.5 494,624 - CCNA_00478 0.30 +0.5 494,639 - CCNA_00478 0.32 -0.4 494,646 - CCNA_00478 0.33 -0.7 494,674 - CCNA_00478 0.36 -3.0 494,676 + CCNA_00478 0.37 -0.1 494,676 + CCNA_00478 0.37 -1.5 494,685 - CCNA_00478 0.38 -0.7 494,703 - CCNA_00478 0.40 -1.1
Or see this region's nucleotide sequence