Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00400

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00399 and CCNA_00400 are separated by 44 nucleotidesCCNA_00400 and CCNA_00401 overlap by 4 nucleotidesCCNA_00401 and CCNA_00402 are separated by 3 nucleotides CCNA_00399: CCNA_00399 - zinc metallohydrolase, glyoxalase II family, at 416,919 to 418,016 _00399 CCNA_00400: CCNA_00400 - MarR/EmrR-family transcriptional regulator, at 418,061 to 418,504 _00400 CCNA_00401: CCNA_00401 - enoyl-CoA hydratase, at 418,501 to 419,271 _00401 CCNA_00402: CCNA_00402 - hypothetical protein, at 419,275 to 419,691 _00402 Position (kb) 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 417.074 kb on - strand, within CCNA_00399at 417.103 kb on - strand, within CCNA_00399at 417.114 kb on + strand, within CCNA_00399at 417.114 kb on + strand, within CCNA_00399at 417.122 kb on - strand, within CCNA_00399at 417.144 kb on + strand, within CCNA_00399at 417.152 kb on - strand, within CCNA_00399at 417.162 kb on + strand, within CCNA_00399at 417.215 kb on - strand, within CCNA_00399at 417.255 kb on - strand, within CCNA_00399at 417.255 kb on - strand, within CCNA_00399at 417.290 kb on + strand, within CCNA_00399at 417.312 kb on - strand, within CCNA_00399at 417.317 kb on - strand, within CCNA_00399at 417.354 kb on + strand, within CCNA_00399at 417.416 kb on + strand, within CCNA_00399at 417.457 kb on - strand, within CCNA_00399at 417.462 kb on + strand, within CCNA_00399at 417.492 kb on - strand, within CCNA_00399at 417.503 kb on - strand, within CCNA_00399at 417.534 kb on + strand, within CCNA_00399at 417.542 kb on - strand, within CCNA_00399at 417.560 kb on - strand, within CCNA_00399at 417.579 kb on - strand, within CCNA_00399at 417.579 kb on - strand, within CCNA_00399at 417.614 kb on - strand, within CCNA_00399at 417.638 kb on + strand, within CCNA_00399at 417.694 kb on + strand, within CCNA_00399at 417.695 kb on + strand, within CCNA_00399at 417.695 kb on + strand, within CCNA_00399at 417.695 kb on + strand, within CCNA_00399at 417.695 kb on + strand, within CCNA_00399at 417.703 kb on - strand, within CCNA_00399at 417.703 kb on - strand, within CCNA_00399at 417.703 kb on - strand, within CCNA_00399at 417.756 kb on + strand, within CCNA_00399at 417.767 kb on - strand, within CCNA_00399at 417.785 kb on - strand, within CCNA_00399at 417.883 kb on + strand, within CCNA_00399at 417.923 kb on - strandat 417.934 kb on - strandat 417.959 kb on + strandat 417.965 kb on + strandat 418.053 kb on - strandat 418.070 kb on + strandat 418.070 kb on - strandat 418.070 kb on - strandat 418.096 kb on + strandat 418.096 kb on + strandat 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.123 kb on + strand, within CCNA_00400at 418.131 kb on - strand, within CCNA_00400at 418.131 kb on - strand, within CCNA_00400at 418.155 kb on - strand, within CCNA_00400at 418.174 kb on + strand, within CCNA_00400at 418.219 kb on - strand, within CCNA_00400at 418.219 kb on - strand, within CCNA_00400at 418.236 kb on + strand, within CCNA_00400at 418.251 kb on + strand, within CCNA_00400at 418.256 kb on + strand, within CCNA_00400at 418.268 kb on - strand, within CCNA_00400at 418.283 kb on + strand, within CCNA_00400at 418.295 kb on - strand, within CCNA_00400at 418.295 kb on - strand, within CCNA_00400at 418.346 kb on - strand, within CCNA_00400at 418.357 kb on + strand, within CCNA_00400at 418.386 kb on - strand, within CCNA_00400at 418.386 kb on - strand, within CCNA_00400at 418.456 kb on - strand, within CCNA_00400at 418.491 kb on - strandat 418.491 kb on - strandat 418.517 kb on - strandat 418.519 kb on + strandat 418.527 kb on - strandat 418.534 kb on + strandat 418.543 kb on + strandat 418.544 kb on + strandat 418.544 kb on + strandat 418.552 kb on - strandat 418.552 kb on - strandat 418.581 kb on + strand, within CCNA_00401at 418.581 kb on + strand, within CCNA_00401at 418.581 kb on + strand, within CCNA_00401at 418.581 kb on + strand, within CCNA_00401at 418.581 kb on + strand, within CCNA_00401at 418.589 kb on - strand, within CCNA_00401at 418.613 kb on + strand, within CCNA_00401at 418.621 kb on - strand, within CCNA_00401at 418.621 kb on - strand, within CCNA_00401at 418.624 kb on + strand, within CCNA_00401at 418.624 kb on + strand, within CCNA_00401at 418.640 kb on - strand, within CCNA_00401at 418.649 kb on - strand, within CCNA_00401at 418.656 kb on + strand, within CCNA_00401at 418.669 kb on + strand, within CCNA_00401at 418.676 kb on + strand, within CCNA_00401at 418.694 kb on + strand, within CCNA_00401at 418.696 kb on - strand, within CCNA_00401at 418.704 kb on - strand, within CCNA_00401at 418.704 kb on - strand, within CCNA_00401at 418.711 kb on + strand, within CCNA_00401at 418.711 kb on + strand, within CCNA_00401at 418.724 kb on - strand, within CCNA_00401at 418.799 kb on - strand, within CCNA_00401at 418.801 kb on + strand, within CCNA_00401at 418.828 kb on - strand, within CCNA_00401at 418.884 kb on - strand, within CCNA_00401at 418.962 kb on + strand, within CCNA_00401at 419.022 kb on - strand, within CCNA_00401at 419.112 kb on + strand, within CCNA_00401at 419.138 kb on + strand, within CCNA_00401at 419.218 kb on + strandat 419.221 kb on + strandat 419.221 kb on + strandat 419.221 kb on + strandat 419.254 kb on - strandat 419.280 kb on + strandat 419.326 kb on + strand, within CCNA_00402at 419.326 kb on + strand, within CCNA_00402at 419.326 kb on + strand, within CCNA_00402at 419.338 kb on + strand, within CCNA_00402at 419.360 kb on + strand, within CCNA_00402at 419.368 kb on - strand, within CCNA_00402at 419.368 kb on - strand, within CCNA_00402at 419.379 kb on + strand, within CCNA_00402at 419.384 kb on + strand, within CCNA_00402at 419.392 kb on - strand, within CCNA_00402at 419.425 kb on + strand, within CCNA_00402at 419.440 kb on + strand, within CCNA_00402at 419.454 kb on - strand, within CCNA_00402at 419.483 kb on - strand, within CCNA_00402at 419.503 kb on + strand, within CCNA_00402

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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417,074 - CCNA_00399 0.14 -0.6
417,103 - CCNA_00399 0.17 -0.4
417,114 + CCNA_00399 0.18 -0.5
417,114 + CCNA_00399 0.18 +0.1
417,122 - CCNA_00399 0.18 -1.0
417,144 + CCNA_00399 0.20 -0.8
417,152 - CCNA_00399 0.21 -0.9
417,162 + CCNA_00399 0.22 -0.9
417,215 - CCNA_00399 0.27 -0.2
417,255 - CCNA_00399 0.31 -0.4
417,255 - CCNA_00399 0.31 -0.4
417,290 + CCNA_00399 0.34 -0.8
417,312 - CCNA_00399 0.36 -0.9
417,317 - CCNA_00399 0.36 -0.2
417,354 + CCNA_00399 0.40 +0.1
417,416 + CCNA_00399 0.45 -0.4
417,457 - CCNA_00399 0.49 -0.8
417,462 + CCNA_00399 0.49 -1.0
417,492 - CCNA_00399 0.52 -1.3
417,503 - CCNA_00399 0.53 +0.1
417,534 + CCNA_00399 0.56 +1.4
417,542 - CCNA_00399 0.57 +0.6
417,560 - CCNA_00399 0.58 -0.2
417,579 - CCNA_00399 0.60 +1.0
417,579 - CCNA_00399 0.60 -0.6
417,614 - CCNA_00399 0.63 -0.3
417,638 + CCNA_00399 0.65 -0.4
417,694 + CCNA_00399 0.71 +0.0
417,695 + CCNA_00399 0.71 -0.6
417,695 + CCNA_00399 0.71 -0.2
417,695 + CCNA_00399 0.71 +0.5
417,695 + CCNA_00399 0.71 -0.0
417,703 - CCNA_00399 0.71 -0.9
417,703 - CCNA_00399 0.71 +0.7
417,703 - CCNA_00399 0.71 -0.2
417,756 + CCNA_00399 0.76 -0.4
417,767 - CCNA_00399 0.77 -1.4
417,785 - CCNA_00399 0.79 +0.1
417,883 + CCNA_00399 0.88 -0.3
417,923 - +0.0
417,934 - -0.3
417,959 + +0.5
417,965 + -0.1
418,053 - -1.6
418,070 + +0.1
418,070 - -0.8
418,070 - -0.8
418,096 + +2.9
418,096 + -0.1
418,123 + CCNA_00400 0.14 +0.2
418,123 + CCNA_00400 0.14 -0.0
418,123 + CCNA_00400 0.14 +0.7
418,131 - CCNA_00400 0.16 -1.0
418,131 - CCNA_00400 0.16 -1.9
418,155 - CCNA_00400 0.21 -0.7
418,174 + CCNA_00400 0.25 +0.2
418,219 - CCNA_00400 0.36 -1.3
418,219 - CCNA_00400 0.36 -1.1
418,236 + CCNA_00400 0.39 -0.3
418,251 + CCNA_00400 0.43 +0.2
418,256 + CCNA_00400 0.44 +0.1
418,268 - CCNA_00400 0.47 -0.4
418,283 + CCNA_00400 0.50 +0.1
418,295 - CCNA_00400 0.53 -0.6
418,295 - CCNA_00400 0.53 -0.3
418,346 - CCNA_00400 0.64 +0.1
418,357 + CCNA_00400 0.67 -0.7
418,386 - CCNA_00400 0.73 -1.4
418,386 - CCNA_00400 0.73 -0.7
418,456 - CCNA_00400 0.89 -0.5
418,491 - +0.1
418,491 - -0.7
418,517 - -1.5
418,519 + +0.6
418,527 - +0.8
418,534 + +0.0
418,543 + -1.0
418,544 + -0.2
418,544 + +0.1
418,552 - -0.7
418,552 - -0.9
418,581 + CCNA_00401 0.10 +3.0
418,581 + CCNA_00401 0.10 -0.2
418,581 + CCNA_00401 0.10 -0.1
418,581 + CCNA_00401 0.10 -0.5
418,581 + CCNA_00401 0.10 -0.7
418,589 - CCNA_00401 0.11 -0.4
418,613 + CCNA_00401 0.15 -0.7
418,621 - CCNA_00401 0.16 -0.5
418,621 - CCNA_00401 0.16 -1.1
418,624 + CCNA_00401 0.16 +0.2
418,624 + CCNA_00401 0.16 -1.0
418,640 - CCNA_00401 0.18 -0.5
418,649 - CCNA_00401 0.19 -0.1
418,656 + CCNA_00401 0.20 +0.2
418,669 + CCNA_00401 0.22 +0.1
418,676 + CCNA_00401 0.23 -0.3
418,694 + CCNA_00401 0.25 -0.7
418,696 - CCNA_00401 0.25 -0.5
418,704 - CCNA_00401 0.26 -0.4
418,704 - CCNA_00401 0.26 -1.5
418,711 + CCNA_00401 0.27 +0.7
418,711 + CCNA_00401 0.27 +0.3
418,724 - CCNA_00401 0.29 -0.8
418,799 - CCNA_00401 0.39 -2.1
418,801 + CCNA_00401 0.39 +1.4
418,828 - CCNA_00401 0.42 +0.8
418,884 - CCNA_00401 0.50 -0.5
418,962 + CCNA_00401 0.60 -0.5
419,022 - CCNA_00401 0.68 -0.6
419,112 + CCNA_00401 0.79 -0.3
419,138 + CCNA_00401 0.83 -0.1
419,218 + -0.3
419,221 + -0.2
419,221 + +0.1
419,221 + -0.0
419,254 - -0.2
419,280 + -0.7
419,326 + CCNA_00402 0.12 +0.3
419,326 + CCNA_00402 0.12 -0.3
419,326 + CCNA_00402 0.12 -0.2
419,338 + CCNA_00402 0.15 +0.0
419,360 + CCNA_00402 0.20 +0.1
419,368 - CCNA_00402 0.22 -0.4
419,368 - CCNA_00402 0.22 -2.8
419,379 + CCNA_00402 0.25 -0.7
419,384 + CCNA_00402 0.26 +0.2
419,392 - CCNA_00402 0.28 -0.1
419,425 + CCNA_00402 0.36 -1.2
419,440 + CCNA_00402 0.40 +0.1
419,454 - CCNA_00402 0.43 -0.7
419,483 - CCNA_00402 0.50 -0.4
419,503 + CCNA_00402 0.55 -0.2

Or see this region's nucleotide sequence