Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00314

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00313 and CCNA_00314 are separated by 42 nucleotidesCCNA_00314 and CCNA_00315 are separated by 25 nucleotides CCNA_00313: CCNA_00313 - peptidase, M14 family, at 326,715 to 328,544 _00313 CCNA_00314: CCNA_00314 - hypothetical protein, at 328,587 to 329,198 _00314 CCNA_00315: CCNA_00315 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 329,224 to 330,753 _00315 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 327.650 kb on + strand, within CCNA_00313at 327.673 kb on - strand, within CCNA_00313at 327.675 kb on + strand, within CCNA_00313at 327.686 kb on + strand, within CCNA_00313at 327.707 kb on + strand, within CCNA_00313at 327.708 kb on + strand, within CCNA_00313at 327.716 kb on - strand, within CCNA_00313at 327.716 kb on - strand, within CCNA_00313at 327.717 kb on - strand, within CCNA_00313at 327.722 kb on + strand, within CCNA_00313at 327.745 kb on + strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.797 kb on - strand, within CCNA_00313at 327.834 kb on + strand, within CCNA_00313at 327.848 kb on - strand, within CCNA_00313at 327.857 kb on + strand, within CCNA_00313at 327.873 kb on - strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.880 kb on + strand, within CCNA_00313at 327.886 kb on + strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.888 kb on - strand, within CCNA_00313at 327.925 kb on - strand, within CCNA_00313at 327.940 kb on - strand, within CCNA_00313at 327.961 kb on - strand, within CCNA_00313at 328.029 kb on - strand, within CCNA_00313at 328.029 kb on - strand, within CCNA_00313at 328.031 kb on + strand, within CCNA_00313at 328.062 kb on - strand, within CCNA_00313at 328.069 kb on + strand, within CCNA_00313at 328.075 kb on + strand, within CCNA_00313at 328.077 kb on - strand, within CCNA_00313at 328.077 kb on - strand, within CCNA_00313at 328.077 kb on - strand, within CCNA_00313at 328.116 kb on - strand, within CCNA_00313at 328.256 kb on - strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.281 kb on + strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.289 kb on - strand, within CCNA_00313at 328.293 kb on + strand, within CCNA_00313at 328.294 kb on + strand, within CCNA_00313at 328.302 kb on - strand, within CCNA_00313at 328.330 kb on + strand, within CCNA_00313at 328.363 kb on + strandat 328.371 kb on - strandat 328.371 kb on - strandat 328.371 kb on - strandat 328.379 kb on + strandat 328.387 kb on - strandat 328.414 kb on - strandat 328.414 kb on - strandat 328.422 kb on + strandat 328.465 kb on + strandat 328.465 kb on + strandat 328.465 kb on + strandat 328.465 kb on + strandat 328.473 kb on - strandat 328.479 kb on + strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.487 kb on - strandat 328.488 kb on - strandat 328.537 kb on - strandat 328.542 kb on - strandat 328.547 kb on + strandat 328.568 kb on + strandat 328.615 kb on + strandat 328.615 kb on + strandat 328.651 kb on - strand, within CCNA_00314at 328.653 kb on + strand, within CCNA_00314at 328.653 kb on + strand, within CCNA_00314at 328.663 kb on + strand, within CCNA_00314at 328.725 kb on + strand, within CCNA_00314at 328.740 kb on - strand, within CCNA_00314at 328.742 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.753 kb on + strand, within CCNA_00314at 328.761 kb on - strand, within CCNA_00314at 328.761 kb on - strand, within CCNA_00314at 328.865 kb on + strand, within CCNA_00314at 328.926 kb on + strand, within CCNA_00314at 328.934 kb on - strand, within CCNA_00314at 328.934 kb on - strand, within CCNA_00314at 328.961 kb on + strand, within CCNA_00314at 328.969 kb on - strand, within CCNA_00314at 328.969 kb on - strand, within CCNA_00314at 328.976 kb on - strand, within CCNA_00314at 328.992 kb on - strand, within CCNA_00314at 328.997 kb on - strand, within CCNA_00314at 328.997 kb on - strand, within CCNA_00314at 329.002 kb on + strand, within CCNA_00314at 329.010 kb on - strand, within CCNA_00314at 329.085 kb on + strand, within CCNA_00314at 329.086 kb on + strand, within CCNA_00314at 329.094 kb on - strand, within CCNA_00314at 329.104 kb on - strand, within CCNA_00314at 329.112 kb on - strand, within CCNA_00314at 329.114 kb on - strand, within CCNA_00314at 329.159 kb on - strandat 329.198 kb on + strandat 329.280 kb on - strandat 329.361 kb on + strandat 329.420 kb on + strand, within CCNA_00315at 329.426 kb on - strand, within CCNA_00315at 329.433 kb on - strand, within CCNA_00315at 329.482 kb on + strand, within CCNA_00315at 329.544 kb on - strand, within CCNA_00315at 329.577 kb on + strand, within CCNA_00315at 329.585 kb on - strand, within CCNA_00315at 329.600 kb on + strand, within CCNA_00315at 329.607 kb on - strand, within CCNA_00315at 329.608 kb on - strand, within CCNA_00315at 329.657 kb on + strand, within CCNA_00315at 329.824 kb on - strand, within CCNA_00315at 329.945 kb on + strand, within CCNA_00315at 330.081 kb on - strand, within CCNA_00315at 330.126 kb on - strand, within CCNA_00315at 330.126 kb on - strand, within CCNA_00315at 330.146 kb on - strand, within CCNA_00315

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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327,650 + CCNA_00313 0.51 +0.2
327,673 - CCNA_00313 0.52 +0.1
327,675 + CCNA_00313 0.52 -1.6
327,686 + CCNA_00313 0.53 -0.2
327,707 + CCNA_00313 0.54 -0.2
327,708 + CCNA_00313 0.54 -0.3
327,716 - CCNA_00313 0.55 +0.1
327,716 - CCNA_00313 0.55 -0.3
327,717 - CCNA_00313 0.55 +0.0
327,722 + CCNA_00313 0.55 +0.6
327,745 + CCNA_00313 0.56 -0.7
327,797 - CCNA_00313 0.59 +0.4
327,797 - CCNA_00313 0.59 +0.3
327,834 + CCNA_00313 0.61 +0.2
327,848 - CCNA_00313 0.62 +0.3
327,857 + CCNA_00313 0.62 +1.2
327,873 - CCNA_00313 0.63 -0.5
327,880 + CCNA_00313 0.64 -0.8
327,880 + CCNA_00313 0.64 -0.7
327,880 + CCNA_00313 0.64 -1.0
327,886 + CCNA_00313 0.64 +0.5
327,888 - CCNA_00313 0.64 -0.7
327,888 - CCNA_00313 0.64 -0.2
327,888 - CCNA_00313 0.64 +0.4
327,888 - CCNA_00313 0.64 -0.1
327,888 - CCNA_00313 0.64 +0.1
327,888 - CCNA_00313 0.64 -0.0
327,925 - CCNA_00313 0.66 +0.2
327,940 - CCNA_00313 0.67 -0.1
327,961 - CCNA_00313 0.68 -0.0
328,029 - CCNA_00313 0.72 +0.3
328,029 - CCNA_00313 0.72 +0.6
328,031 + CCNA_00313 0.72 +0.3
328,062 - CCNA_00313 0.74 +1.2
328,069 + CCNA_00313 0.74 -0.8
328,075 + CCNA_00313 0.74 -0.1
328,077 - CCNA_00313 0.74 +0.6
328,077 - CCNA_00313 0.74 +0.0
328,077 - CCNA_00313 0.74 +0.0
328,116 - CCNA_00313 0.77 -0.0
328,256 - CCNA_00313 0.84 +0.3
328,281 + CCNA_00313 0.86 -0.6
328,281 + CCNA_00313 0.86 -0.5
328,281 + CCNA_00313 0.86 -1.9
328,281 + CCNA_00313 0.86 +0.0
328,281 + CCNA_00313 0.86 -1.0
328,289 - CCNA_00313 0.86 +0.2
328,289 - CCNA_00313 0.86 +0.1
328,289 - CCNA_00313 0.86 -0.1
328,289 - CCNA_00313 0.86 -0.0
328,289 - CCNA_00313 0.86 +0.4
328,289 - CCNA_00313 0.86 -1.2
328,293 + CCNA_00313 0.86 +0.2
328,294 + CCNA_00313 0.86 +0.3
328,302 - CCNA_00313 0.87 +0.2
328,330 + CCNA_00313 0.88 +2.0
328,363 + +0.3
328,371 - -0.3
328,371 - +0.8
328,371 - -0.4
328,379 + -0.1
328,387 - +1.1
328,414 - -0.3
328,414 - -0.1
328,422 + +0.5
328,465 + -0.0
328,465 + +0.3
328,465 + +0.3
328,465 + -0.0
328,473 - +0.4
328,479 + -0.6
328,487 - -0.3
328,487 - -0.6
328,487 - -0.1
328,487 - +0.9
328,488 - +0.4
328,537 - -0.4
328,542 - +0.2
328,547 + -1.5
328,568 + -0.6
328,615 + +0.4
328,615 + -0.3
328,651 - CCNA_00314 0.10 +0.6
328,653 + CCNA_00314 0.11 +0.0
328,653 + CCNA_00314 0.11 -0.4
328,663 + CCNA_00314 0.12 +0.2
328,725 + CCNA_00314 0.23 -2.1
328,740 - CCNA_00314 0.25 -0.0
328,742 + CCNA_00314 0.25 -0.6
328,753 + CCNA_00314 0.27 +0.5
328,753 + CCNA_00314 0.27 -1.3
328,761 - CCNA_00314 0.28 +0.3
328,761 - CCNA_00314 0.28 +0.1
328,865 + CCNA_00314 0.45 +1.2
328,926 + CCNA_00314 0.55 +0.8
328,934 - CCNA_00314 0.57 +0.3
328,934 - CCNA_00314 0.57 +0.2
328,961 + CCNA_00314 0.61 -0.4
328,969 - CCNA_00314 0.62 -1.1
328,969 - CCNA_00314 0.62 +0.8
328,976 - CCNA_00314 0.64 +0.0
328,992 - CCNA_00314 0.66 -0.2
328,997 - CCNA_00314 0.67 +0.5
328,997 - CCNA_00314 0.67 -0.4
329,002 + CCNA_00314 0.68 +0.6
329,010 - CCNA_00314 0.69 -1.6
329,085 + CCNA_00314 0.81 +0.0
329,086 + CCNA_00314 0.82 -0.7
329,094 - CCNA_00314 0.83 -0.3
329,104 - CCNA_00314 0.84 +1.6
329,112 - CCNA_00314 0.86 +0.7
329,114 - CCNA_00314 0.86 -0.1
329,159 - +0.2
329,198 + -0.3
329,280 - -0.7
329,361 + -0.4
329,420 + CCNA_00315 0.13 +1.2
329,426 - CCNA_00315 0.13 +2.2
329,433 - CCNA_00315 0.14 +0.9
329,482 + CCNA_00315 0.17 +0.2
329,544 - CCNA_00315 0.21 +0.1
329,577 + CCNA_00315 0.23 +0.2
329,585 - CCNA_00315 0.24 +1.0
329,600 + CCNA_00315 0.25 -0.2
329,607 - CCNA_00315 0.25 -1.1
329,608 - CCNA_00315 0.25 +1.0
329,657 + CCNA_00315 0.28 -1.0
329,824 - CCNA_00315 0.39 -1.1
329,945 + CCNA_00315 0.47 -1.0
330,081 - CCNA_00315 0.56 -0.3
330,126 - CCNA_00315 0.59 +0.0
330,126 - CCNA_00315 0.59 +0.8
330,146 - CCNA_00315 0.60 +0.1

Or see this region's nucleotide sequence