Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00307 and CCNA_00308 are separated by 155 nucleotides CCNA_00308 and CCNA_00309 are separated by 122 nucleotides CCNA_00309 and CCNA_00310 are separated by 20 nucleotides CCNA_00310 and CCNA_00311 overlap by 4 nucleotides
CCNA_00307: CCNA_00307 - phospholipid-lipopolysaccharide ABC transporter, at 321,045 to 322,868
_00307
CCNA_00308: CCNA_00308 - protein tyrosine phosphatase CtpA, at 323,024 to 323,689
_00308
CCNA_00309: CCNA_00309 - hypothetical protein, at 323,812 to 324,045
_00309
CCNA_00310: CCNA_00310 - 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase family protein, at 324,066 to 324,845
_00310
CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173
_00311
Position (kb) 323
324
325 Strain fitness (log2 ratio) -1
0
1 at 322.824 kb on + strand at 322.844 kb on - strand at 322.854 kb on + strand at 322.857 kb on - strand at 322.877 kb on + strand at 322.885 kb on - strand at 322.904 kb on - strand at 322.908 kb on + strand at 323.021 kb on + strand at 323.026 kb on + strand at 323.034 kb on - strand at 323.059 kb on + strand at 323.067 kb on - strand at 323.067 kb on - strand at 323.254 kb on + strand, within CCNA_00308 at 323.653 kb on - strand at 323.704 kb on + strand at 323.704 kb on + strand at 323.714 kb on - strand at 323.726 kb on - strand at 323.732 kb on - strand at 323.811 kb on - strand at 323.811 kb on - strand at 324.057 kb on + strand at 324.057 kb on + strand at 324.064 kb on + strand at 324.065 kb on - strand at 324.065 kb on - strand at 324.065 kb on - strand at 324.132 kb on - strand at 324.166 kb on + strand, within CCNA_00310 at 324.174 kb on - strand, within CCNA_00310 at 324.195 kb on - strand, within CCNA_00310 at 324.195 kb on - strand, within CCNA_00310 at 324.302 kb on + strand, within CCNA_00310 at 324.310 kb on - strand, within CCNA_00310 at 324.422 kb on + strand, within CCNA_00310 at 324.431 kb on - strand, within CCNA_00310 at 324.444 kb on + strand, within CCNA_00310 at 324.452 kb on - strand, within CCNA_00310 at 324.461 kb on - strand, within CCNA_00310 at 324.462 kb on + strand, within CCNA_00310 at 324.469 kb on - strand, within CCNA_00310 at 324.475 kb on - strand, within CCNA_00310 at 324.480 kb on + strand, within CCNA_00310 at 324.483 kb on - strand, within CCNA_00310 at 324.486 kb on + strand, within CCNA_00310 at 324.491 kb on + strand, within CCNA_00310 at 324.514 kb on - strand, within CCNA_00310 at 324.529 kb on + strand, within CCNA_00310 at 324.562 kb on + strand, within CCNA_00310 at 324.598 kb on + strand, within CCNA_00310 at 324.612 kb on - strand, within CCNA_00310 at 324.692 kb on + strand, within CCNA_00310 at 324.752 kb on + strand, within CCNA_00310 at 324.782 kb on - strand at 324.799 kb on - strand at 324.825 kb on + strand at 324.830 kb on + strand at 324.838 kb on - strand at 324.838 kb on - strand at 325.004 kb on + strand, within CCNA_00311 at 325.004 kb on + strand, within CCNA_00311 at 325.005 kb on - strand, within CCNA_00311
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 322,824 + -0.6 322,844 - +0.6 322,854 + +0.8 322,857 - +0.0 322,877 + -0.2 322,885 - +0.0 322,904 - -0.1 322,908 + -0.3 323,021 + +0.7 323,026 + -0.2 323,034 - -0.7 323,059 + +0.2 323,067 - +0.6 323,067 - -0.2 323,254 + CCNA_00308 0.35 +0.6 323,653 - +0.0 323,704 + +0.6 323,704 + -1.0 323,714 - +0.2 323,726 - -0.4 323,732 - +0.1 323,811 - +0.1 323,811 - -0.3 324,057 + -0.1 324,057 + -0.1 324,064 + +0.4 324,065 - +0.1 324,065 - +0.8 324,065 - -0.4 324,132 - +0.3 324,166 + CCNA_00310 0.13 -1.2 324,174 - CCNA_00310 0.14 +0.3 324,195 - CCNA_00310 0.17 -0.0 324,195 - CCNA_00310 0.17 +0.7 324,302 + CCNA_00310 0.30 +0.1 324,310 - CCNA_00310 0.31 +1.3 324,422 + CCNA_00310 0.46 +0.5 324,431 - CCNA_00310 0.47 +0.3 324,444 + CCNA_00310 0.48 +0.2 324,452 - CCNA_00310 0.49 +0.5 324,461 - CCNA_00310 0.51 -0.0 324,462 + CCNA_00310 0.51 -0.2 324,469 - CCNA_00310 0.52 +0.2 324,475 - CCNA_00310 0.52 +0.2 324,480 + CCNA_00310 0.53 -0.8 324,483 - CCNA_00310 0.53 +0.1 324,486 + CCNA_00310 0.54 -0.8 324,491 + CCNA_00310 0.54 -1.2 324,514 - CCNA_00310 0.57 +0.4 324,529 + CCNA_00310 0.59 +0.6 324,562 + CCNA_00310 0.64 +0.3 324,598 + CCNA_00310 0.68 -0.3 324,612 - CCNA_00310 0.70 +0.4 324,692 + CCNA_00310 0.80 -0.0 324,752 + CCNA_00310 0.88 -0.7 324,782 - +0.2 324,799 - -0.2 324,825 + +1.0 324,830 + -0.0 324,838 - +0.0 324,838 - +0.2 325,004 + CCNA_00311 0.12 -0.8 325,004 + CCNA_00311 0.12 -1.2 325,005 - CCNA_00311 0.12 +0.4
Or see this region's nucleotide sequence