Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00238 and CCNA_00239 overlap by 4 nucleotides CCNA_00239 and CCNA_00240 are separated by 75 nucleotides CCNA_00240 and CCNA_00241 overlap by 4 nucleotides CCNA_00241 and CCNA_03917 are separated by 239 nucleotides CCNA_03917 and CCNA_00243 are separated by 67 nucleotides CCNA_00243 and CCNA_00244 are separated by 142 nucleotides
CCNA_00238: CCNA_00238 - two-component sensor histidine kinase chvG, at 253,207 to 254,811
_00238
CCNA_00239: CCNA_00239 - serine kinase/phosphatase HprK, at 254,808 to 255,242
_00239
CCNA_00240: CCNA_00240 - PTS system, IIA component, at 255,318 to 255,725
_00240
CCNA_00241: CCNA_00241 - phosphocarrier protein HPr, at 255,722 to 256,000
_00241
CCNA_03917: CCNA_03917 - hypothetical protein, at 256,240 to 256,344
_03917
CCNA_00243: CCNA_00243 - hypothetical protein, at 256,412 to 256,810
_00243
CCNA_00244: CCNA_00244 - HAD superfamily phophatase, at 256,953 to 257,594
_00244
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 254.850 kb on - strand at 254.899 kb on + strand, within CCNA_00239 at 254.914 kb on + strand, within CCNA_00239 at 255.002 kb on - strand, within CCNA_00239 at 255.231 kb on - strand at 255.233 kb on - strand at 255.257 kb on - strand at 255.271 kb on - strand at 255.276 kb on - strand at 255.315 kb on + strand at 255.370 kb on + strand, within CCNA_00240 at 255.381 kb on - strand, within CCNA_00240 at 255.403 kb on + strand, within CCNA_00240 at 255.460 kb on + strand, within CCNA_00240 at 255.566 kb on + strand, within CCNA_00240 at 255.574 kb on - strand, within CCNA_00240 at 255.642 kb on + strand, within CCNA_00240 at 255.647 kb on + strand, within CCNA_00240 at 255.655 kb on - strand, within CCNA_00240 at 255.905 kb on - strand, within CCNA_00241 at 255.997 kb on + strand at 256.005 kb on - strand at 256.005 kb on - strand at 256.017 kb on + strand at 256.041 kb on + strand at 256.049 kb on - strand at 256.124 kb on + strand at 256.132 kb on - strand at 256.134 kb on + strand at 256.142 kb on - strand at 256.142 kb on - strand at 256.142 kb on - strand at 256.165 kb on - strand at 256.171 kb on - strand at 256.178 kb on + strand at 256.206 kb on + strand at 256.206 kb on + strand at 256.214 kb on - strand at 256.214 kb on - strand at 256.245 kb on + strand at 256.251 kb on + strand, within CCNA_03917 at 256.321 kb on - strand, within CCNA_03917 at 256.321 kb on - strand, within CCNA_03917 at 256.342 kb on + strand at 256.394 kb on + strand at 256.396 kb on - strand at 256.440 kb on - strand at 256.475 kb on - strand, within CCNA_00243 at 256.508 kb on + strand, within CCNA_00243 at 256.528 kb on - strand, within CCNA_00243 at 256.547 kb on - strand, within CCNA_00243 at 256.574 kb on + strand, within CCNA_00243 at 256.574 kb on + strand, within CCNA_00243 at 256.574 kb on + strand, within CCNA_00243 at 256.574 kb on + strand, within CCNA_00243 at 256.602 kb on - strand, within CCNA_00243 at 256.604 kb on + strand, within CCNA_00243 at 256.604 kb on + strand, within CCNA_00243 at 256.653 kb on + strand, within CCNA_00243 at 256.657 kb on - strand, within CCNA_00243 at 256.657 kb on - strand, within CCNA_00243 at 256.682 kb on - strand, within CCNA_00243 at 256.687 kb on - strand, within CCNA_00243 at 256.705 kb on + strand, within CCNA_00243 at 256.705 kb on + strand, within CCNA_00243 at 256.710 kb on + strand, within CCNA_00243 at 256.762 kb on + strand, within CCNA_00243 at 256.806 kb on + strand at 256.860 kb on + strand at 256.868 kb on - strand at 256.878 kb on + strand at 256.991 kb on + strand at 256.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 254,850 - +0.3 254,899 + CCNA_00239 0.21 +0.6 254,914 + CCNA_00239 0.24 -2.1 255,002 - CCNA_00239 0.45 +1.0 255,231 - -1.0 255,233 - -0.2 255,257 - -0.2 255,271 - +1.1 255,276 - +0.7 255,315 + +0.1 255,370 + CCNA_00240 0.13 -0.6 255,381 - CCNA_00240 0.15 +0.6 255,403 + CCNA_00240 0.21 +1.6 255,460 + CCNA_00240 0.35 +1.8 255,566 + CCNA_00240 0.61 +0.7 255,574 - CCNA_00240 0.63 +0.3 255,642 + CCNA_00240 0.79 -0.4 255,647 + CCNA_00240 0.81 +0.6 255,655 - CCNA_00240 0.83 +0.3 255,905 - CCNA_00241 0.66 -0.4 255,997 + +0.3 256,005 - +1.6 256,005 - +1.7 256,017 + -0.2 256,041 + -0.4 256,049 - -0.2 256,124 + -0.7 256,132 - -0.5 256,134 + -0.1 256,142 - +0.0 256,142 - +0.2 256,142 - +1.0 256,165 - +0.5 256,171 - -0.3 256,178 + +0.0 256,206 + -0.3 256,206 + -1.7 256,214 - +0.9 256,214 - +0.1 256,245 + +0.0 256,251 + CCNA_03917 0.10 -0.7 256,321 - CCNA_03917 0.77 +0.2 256,321 - CCNA_03917 0.77 +0.8 256,342 + +3.2 256,394 + -2.2 256,396 - -0.2 256,440 - -0.5 256,475 - CCNA_00243 0.16 +1.3 256,508 + CCNA_00243 0.24 -1.0 256,528 - CCNA_00243 0.29 -0.1 256,547 - CCNA_00243 0.34 +0.0 256,574 + CCNA_00243 0.41 -0.2 256,574 + CCNA_00243 0.41 +0.0 256,574 + CCNA_00243 0.41 -0.4 256,574 + CCNA_00243 0.41 -0.7 256,602 - CCNA_00243 0.48 -0.2 256,604 + CCNA_00243 0.48 -0.7 256,604 + CCNA_00243 0.48 -0.8 256,653 + CCNA_00243 0.60 -0.2 256,657 - CCNA_00243 0.61 +0.2 256,657 - CCNA_00243 0.61 -0.1 256,682 - CCNA_00243 0.68 +0.5 256,687 - CCNA_00243 0.69 +0.4 256,705 + CCNA_00243 0.73 +1.9 256,705 + CCNA_00243 0.73 +0.8 256,710 + CCNA_00243 0.75 -1.1 256,762 + CCNA_00243 0.88 -0.5 256,806 + +0.1 256,860 + +0.6 256,868 - -0.8 256,878 + +0.8 256,991 + -0.1 256,999 - -1.9
Or see this region's nucleotide sequence