Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00159

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00158 and CCNA_00159 overlap by 4 nucleotidesCCNA_00159 and CCNA_00160 are separated by 140 nucleotides CCNA_00158: CCNA_00158 - DNA replication and repair protein recF, at 165,621 to 166,784 _00158 CCNA_00159: CCNA_00159 - DNA gyrase subunit B, at 166,781 to 169,246 _00159 CCNA_00160: CCNA_00160 - methyl-accepting chemotaxis protein, at 169,387 to 170,526 _00160 Position (kb) 166 167 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 165.790 kb on + strand, within CCNA_00158at 165.800 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.842 kb on + strand, within CCNA_00158at 165.850 kb on - strand, within CCNA_00158at 165.869 kb on + strand, within CCNA_00158at 165.900 kb on - strand, within CCNA_00158at 165.909 kb on + strand, within CCNA_00158at 165.909 kb on + strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.917 kb on - strand, within CCNA_00158at 165.922 kb on - strand, within CCNA_00158at 165.934 kb on - strand, within CCNA_00158at 165.934 kb on - strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.227 kb on + strand, within CCNA_00158at 166.235 kb on - strand, within CCNA_00158at 166.241 kb on - strand, within CCNA_00158at 166.262 kb on - strand, within CCNA_00158at 166.268 kb on + strand, within CCNA_00158at 166.292 kb on - strand, within CCNA_00158at 166.320 kb on - strand, within CCNA_00158at 166.335 kb on - strand, within CCNA_00158at 166.352 kb on - strand, within CCNA_00158at 166.383 kb on - strand, within CCNA_00158at 166.383 kb on - strand, within CCNA_00158at 166.393 kb on - strand, within CCNA_00158at 166.394 kb on - strand, within CCNA_00158at 166.422 kb on + strand, within CCNA_00158at 166.434 kb on + strand, within CCNA_00158at 166.434 kb on + strand, within CCNA_00158at 166.442 kb on - strand, within CCNA_00158at 166.477 kb on - strand, within CCNA_00158at 166.542 kb on + strand, within CCNA_00158at 166.596 kb on + strand, within CCNA_00158at 166.683 kb on + strandat 166.758 kb on + strandat 169.259 kb on - strandat 169.302 kb on + strandat 169.315 kb on - strandat 169.315 kb on - strandat 169.315 kb on - strandat 169.374 kb on - strandat 169.433 kb on - strandat 169.452 kb on + strandat 169.452 kb on + strandat 169.462 kb on - strandat 169.462 kb on - strandat 169.464 kb on + strandat 169.472 kb on - strandat 169.498 kb on - strandat 169.512 kb on + strand, within CCNA_00160at 169.535 kb on - strand, within CCNA_00160at 169.564 kb on + strand, within CCNA_00160at 169.605 kb on + strand, within CCNA_00160at 169.618 kb on + strand, within CCNA_00160at 169.632 kb on - strand, within CCNA_00160at 169.647 kb on + strand, within CCNA_00160at 169.656 kb on + strand, within CCNA_00160at 169.668 kb on + strand, within CCNA_00160at 169.673 kb on + strand, within CCNA_00160at 169.697 kb on + strand, within CCNA_00160at 169.714 kb on - strand, within CCNA_00160at 169.714 kb on - strand, within CCNA_00160at 169.763 kb on + strand, within CCNA_00160at 169.771 kb on - strand, within CCNA_00160at 169.771 kb on - strand, within CCNA_00160at 169.780 kb on - strand, within CCNA_00160at 169.786 kb on - strand, within CCNA_00160at 169.816 kb on - strand, within CCNA_00160at 169.827 kb on + strand, within CCNA_00160at 169.827 kb on + strand, within CCNA_00160at 169.830 kb on - strand, within CCNA_00160at 169.837 kb on - strand, within CCNA_00160at 169.854 kb on + strand, within CCNA_00160at 169.869 kb on + strand, within CCNA_00160at 169.872 kb on - strand, within CCNA_00160at 169.872 kb on - strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.874 kb on + strand, within CCNA_00160at 169.877 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.882 kb on - strand, within CCNA_00160at 169.884 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.922 kb on + strand, within CCNA_00160at 169.923 kb on + strand, within CCNA_00160at 169.931 kb on - strand, within CCNA_00160at 169.949 kb on - strand, within CCNA_00160at 169.955 kb on + strand, within CCNA_00160at 169.963 kb on - strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.978 kb on + strand, within CCNA_00160at 169.986 kb on - strand, within CCNA_00160at 170.014 kb on - strand, within CCNA_00160at 170.065 kb on - strand, within CCNA_00160at 170.067 kb on - strand, within CCNA_00160at 170.076 kb on - strand, within CCNA_00160at 170.110 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.125 kb on + strand, within CCNA_00160at 170.133 kb on - strand, within CCNA_00160at 170.143 kb on + strand, within CCNA_00160at 170.194 kb on + strand, within CCNA_00160at 170.202 kb on - strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.230 kb on + strand, within CCNA_00160at 170.235 kb on + strand, within CCNA_00160at 170.243 kb on - strand, within CCNA_00160

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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165,790 + CCNA_00158 0.15 +0.3
165,800 + CCNA_00158 0.15 -0.7
165,842 + CCNA_00158 0.19 +0.1
165,842 + CCNA_00158 0.19 +1.0
165,842 + CCNA_00158 0.19 +0.1
165,842 + CCNA_00158 0.19 -0.1
165,842 + CCNA_00158 0.19 +2.3
165,842 + CCNA_00158 0.19 +0.2
165,842 + CCNA_00158 0.19 +0.2
165,842 + CCNA_00158 0.19 +0.0
165,850 - CCNA_00158 0.20 +0.4
165,869 + CCNA_00158 0.21 -0.6
165,900 - CCNA_00158 0.24 -0.3
165,909 + CCNA_00158 0.25 -1.3
165,909 + CCNA_00158 0.25 -0.4
165,917 - CCNA_00158 0.25 +0.8
165,917 - CCNA_00158 0.25 -1.6
165,922 - CCNA_00158 0.26 +0.8
165,934 - CCNA_00158 0.27 +0.1
165,934 - CCNA_00158 0.27 -0.3
166,227 + CCNA_00158 0.52 +0.4
166,227 + CCNA_00158 0.52 -0.1
166,227 + CCNA_00158 0.52 -0.5
166,235 - CCNA_00158 0.53 +1.3
166,241 - CCNA_00158 0.53 -0.5
166,262 - CCNA_00158 0.55 +0.7
166,268 + CCNA_00158 0.56 -0.0
166,292 - CCNA_00158 0.58 -0.4
166,320 - CCNA_00158 0.60 -0.8
166,335 - CCNA_00158 0.61 -0.7
166,352 - CCNA_00158 0.63 -0.2
166,383 - CCNA_00158 0.65 -0.0
166,383 - CCNA_00158 0.65 +2.2
166,393 - CCNA_00158 0.66 -0.5
166,394 - CCNA_00158 0.66 -1.8
166,422 + CCNA_00158 0.69 +0.5
166,434 + CCNA_00158 0.70 +1.5
166,434 + CCNA_00158 0.70 +0.4
166,442 - CCNA_00158 0.71 -0.9
166,477 - CCNA_00158 0.74 -0.3
166,542 + CCNA_00158 0.79 -0.4
166,596 + CCNA_00158 0.84 -1.1
166,683 + +0.4
166,758 + +0.2
169,259 - +0.4
169,302 + +0.6
169,315 - -0.4
169,315 - +0.6
169,315 - -0.1
169,374 - -0.4
169,433 - +0.4
169,452 + -0.1
169,452 + -0.1
169,462 - -1.0
169,462 - -0.3
169,464 + -0.8
169,472 - +0.3
169,498 - -0.0
169,512 + CCNA_00160 0.11 +0.5
169,535 - CCNA_00160 0.13 +0.1
169,564 + CCNA_00160 0.16 +0.2
169,605 + CCNA_00160 0.19 +0.1
169,618 + CCNA_00160 0.20 -0.5
169,632 - CCNA_00160 0.21 -0.6
169,647 + CCNA_00160 0.23 +0.8
169,656 + CCNA_00160 0.24 +0.3
169,668 + CCNA_00160 0.25 +0.2
169,673 + CCNA_00160 0.25 +0.5
169,697 + CCNA_00160 0.27 +0.1
169,714 - CCNA_00160 0.29 -0.5
169,714 - CCNA_00160 0.29 +0.1
169,763 + CCNA_00160 0.33 +0.2
169,771 - CCNA_00160 0.34 -0.1
169,771 - CCNA_00160 0.34 -2.2
169,780 - CCNA_00160 0.34 -0.3
169,786 - CCNA_00160 0.35 +0.0
169,816 - CCNA_00160 0.38 -1.2
169,827 + CCNA_00160 0.39 -0.1
169,827 + CCNA_00160 0.39 -0.3
169,830 - CCNA_00160 0.39 -0.2
169,837 - CCNA_00160 0.39 -0.4
169,854 + CCNA_00160 0.41 +0.2
169,869 + CCNA_00160 0.42 +0.2
169,872 - CCNA_00160 0.43 -0.2
169,872 - CCNA_00160 0.43 -0.7
169,874 + CCNA_00160 0.43 -0.0
169,874 + CCNA_00160 0.43 +0.3
169,877 - CCNA_00160 0.43 -0.2
169,882 - CCNA_00160 0.43 -0.1
169,882 - CCNA_00160 0.43 -0.9
169,882 - CCNA_00160 0.43 -0.3
169,882 - CCNA_00160 0.43 -1.4
169,884 + CCNA_00160 0.44 +0.7
169,922 + CCNA_00160 0.47 -0.5
169,922 + CCNA_00160 0.47 +0.4
169,922 + CCNA_00160 0.47 -0.2
169,922 + CCNA_00160 0.47 +0.2
169,923 + CCNA_00160 0.47 +0.0
169,931 - CCNA_00160 0.48 -0.1
169,949 - CCNA_00160 0.49 +0.1
169,955 + CCNA_00160 0.50 +0.7
169,963 - CCNA_00160 0.51 -0.0
169,978 + CCNA_00160 0.52 +0.4
169,978 + CCNA_00160 0.52 -0.8
169,978 + CCNA_00160 0.52 -0.4
169,986 - CCNA_00160 0.53 -1.4
170,014 - CCNA_00160 0.55 +0.1
170,065 - CCNA_00160 0.59 -1.5
170,067 - CCNA_00160 0.60 +0.6
170,076 - CCNA_00160 0.60 -0.7
170,110 + CCNA_00160 0.63 -1.6
170,125 + CCNA_00160 0.65 +0.9
170,125 + CCNA_00160 0.65 +1.2
170,125 + CCNA_00160 0.65 -0.2
170,133 - CCNA_00160 0.65 +0.0
170,143 + CCNA_00160 0.66 +0.2
170,194 + CCNA_00160 0.71 +0.9
170,202 - CCNA_00160 0.71 -0.7
170,230 + CCNA_00160 0.74 -0.2
170,230 + CCNA_00160 0.74 -0.0
170,235 + CCNA_00160 0.74 +0.0
170,243 - CCNA_00160 0.75 +0.3

Or see this region's nucleotide sequence