Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00086

Experiment: PYE no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00084 and CCNA_00085 are separated by 12 nucleotidesCCNA_00085 and CCNA_00086 are separated by 53 nucleotidesCCNA_00086 and CCNA_00087 are separated by 337 nucleotides CCNA_00084: CCNA_00084 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 89,053 to 90,642 _00084 CCNA_00085: CCNA_00085 - dienelactone hydrolase-related protein, at 90,655 to 91,413 _00085 CCNA_00086: CCNA_00086 - NAD-specific glutamate dehydrogenase GdhZ, at 91,467 to 96,290 _00086 CCNA_00087: CCNA_00087 - conserved membrane spanning protein, at 96,628 to 97,737 _00087 Position (kb) 91 92 93 94 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2at 90.501 kb on - strandat 90.612 kb on + strandat 90.612 kb on + strandat 90.618 kb on - strandat 90.620 kb on - strandat 90.655 kb on - strandat 90.659 kb on + strandat 90.795 kb on - strand, within CCNA_00085at 90.808 kb on - strand, within CCNA_00085at 90.813 kb on - strand, within CCNA_00085at 90.826 kb on + strand, within CCNA_00085at 90.911 kb on - strand, within CCNA_00085at 90.916 kb on - strand, within CCNA_00085at 90.920 kb on + strand, within CCNA_00085at 90.930 kb on - strand, within CCNA_00085at 90.935 kb on - strand, within CCNA_00085at 90.937 kb on + strand, within CCNA_00085at 90.937 kb on + strand, within CCNA_00085at 90.945 kb on - strand, within CCNA_00085at 90.946 kb on + strand, within CCNA_00085at 90.968 kb on - strand, within CCNA_00085at 90.995 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.018 kb on + strand, within CCNA_00085at 91.026 kb on + strand, within CCNA_00085at 91.026 kb on - strand, within CCNA_00085at 91.028 kb on + strand, within CCNA_00085at 91.028 kb on + strand, within CCNA_00085at 91.036 kb on - strand, within CCNA_00085at 91.063 kb on + strand, within CCNA_00085at 91.063 kb on + strand, within CCNA_00085at 91.071 kb on - strand, within CCNA_00085at 91.071 kb on - strand, within CCNA_00085at 91.076 kb on - strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.101 kb on + strand, within CCNA_00085at 91.109 kb on - strand, within CCNA_00085at 91.109 kb on - strand, within CCNA_00085at 91.109 kb on - strand, within CCNA_00085at 91.109 kb on - strand, within CCNA_00085at 91.119 kb on + strand, within CCNA_00085at 91.119 kb on + strand, within CCNA_00085at 91.127 kb on - strand, within CCNA_00085at 91.127 kb on - strand, within CCNA_00085at 91.128 kb on - strand, within CCNA_00085at 91.128 kb on - strand, within CCNA_00085at 91.152 kb on - strand, within CCNA_00085at 91.152 kb on - strand, within CCNA_00085at 91.152 kb on - strand, within CCNA_00085at 91.171 kb on - strand, within CCNA_00085at 91.171 kb on - strand, within CCNA_00085at 91.171 kb on - strand, within CCNA_00085at 91.171 kb on - strand, within CCNA_00085at 91.171 kb on - strand, within CCNA_00085at 91.171 kb on - strand, within CCNA_00085at 91.185 kb on + strand, within CCNA_00085at 91.209 kb on + strand, within CCNA_00085at 91.216 kb on - strand, within CCNA_00085at 91.216 kb on - strand, within CCNA_00085at 91.223 kb on + strand, within CCNA_00085at 91.269 kb on + strand, within CCNA_00085at 91.277 kb on - strand, within CCNA_00085at 91.287 kb on + strand, within CCNA_00085at 91.301 kb on + strand, within CCNA_00085at 91.334 kb on + strand, within CCNA_00085at 91.342 kb on - strandat 91.362 kb on + strandat 91.362 kb on + strandat 91.372 kb on + strandat 91.380 kb on - strandat 91.380 kb on - strandat 91.380 kb on - strandat 91.401 kb on - strandat 91.472 kb on - strandat 91.687 kb on - strandat 91.814 kb on - strandat 94.023 kb on - strand, within CCNA_00086at 96.394 kb on + strandat 96.416 kb on - strandat 96.430 kb on - strandat 96.494 kb on - strandat 96.511 kb on + strandat 96.537 kb on + strandat 96.545 kb on - strandat 96.545 kb on - strandat 96.550 kb on - strandat 96.576 kb on + strandat 96.586 kb on + strandat 96.586 kb on + strandat 96.594 kb on - strandat 96.594 kb on - strandat 96.613 kb on + strandat 96.629 kb on + strandat 96.653 kb on + strandat 96.658 kb on + strandat 96.658 kb on + strandat 96.670 kb on + strandat 96.678 kb on - strandat 96.719 kb on + strandat 96.719 kb on + strandat 96.727 kb on - strandat 96.727 kb on - strandat 96.729 kb on + strandat 96.737 kb on - strandat 96.737 kb on - strandat 96.742 kb on - strand, within CCNA_00087at 96.742 kb on - strand, within CCNA_00087at 96.742 kb on - strand, within CCNA_00087at 96.808 kb on - strand, within CCNA_00087at 96.809 kb on + strand, within CCNA_00087at 96.817 kb on - strand, within CCNA_00087at 96.854 kb on + strand, within CCNA_00087at 96.868 kb on - strand, within CCNA_00087at 96.911 kb on + strand, within CCNA_00087at 96.947 kb on + strand, within CCNA_00087at 96.994 kb on + strand, within CCNA_00087at 97.002 kb on - strand, within CCNA_00087at 97.032 kb on - strand, within CCNA_00087at 97.039 kb on + strand, within CCNA_00087at 97.042 kb on - strand, within CCNA_00087at 97.047 kb on - strand, within CCNA_00087at 97.054 kb on - strand, within CCNA_00087at 97.059 kb on - strand, within CCNA_00087at 97.059 kb on - strand, within CCNA_00087at 97.073 kb on + strand, within CCNA_00087at 97.126 kb on + strand, within CCNA_00087at 97.126 kb on + strand, within CCNA_00087at 97.134 kb on - strand, within CCNA_00087at 97.139 kb on - strand, within CCNA_00087at 97.139 kb on - strand, within CCNA_00087at 97.151 kb on + strand, within CCNA_00087at 97.182 kb on + strand, within CCNA_00087at 97.190 kb on - strand, within CCNA_00087at 97.243 kb on - strand, within CCNA_00087at 97.247 kb on - strand, within CCNA_00087at 97.250 kb on + strand, within CCNA_00087at 97.285 kb on + strand, within CCNA_00087

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE no stress control
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90,501 - -0.0
90,612 + -0.1
90,612 + +0.1
90,618 - -0.6
90,620 - -0.7
90,655 - -0.0
90,659 + -0.1
90,795 - CCNA_00085 0.18 -0.2
90,808 - CCNA_00085 0.20 +0.5
90,813 - CCNA_00085 0.21 +0.7
90,826 + CCNA_00085 0.23 -0.3
90,911 - CCNA_00085 0.34 -0.1
90,916 - CCNA_00085 0.34 +0.2
90,920 + CCNA_00085 0.35 +0.7
90,930 - CCNA_00085 0.36 -0.4
90,935 - CCNA_00085 0.37 -0.1
90,937 + CCNA_00085 0.37 +0.6
90,937 + CCNA_00085 0.37 -0.2
90,945 - CCNA_00085 0.38 -0.1
90,946 + CCNA_00085 0.38 -0.1
90,968 - CCNA_00085 0.41 -0.3
90,995 + CCNA_00085 0.45 +1.5
91,018 + CCNA_00085 0.48 +0.3
91,018 + CCNA_00085 0.48 -0.9
91,018 + CCNA_00085 0.48 +0.2
91,018 + CCNA_00085 0.48 +0.2
91,018 + CCNA_00085 0.48 -0.2
91,026 + CCNA_00085 0.49 +0.3
91,026 - CCNA_00085 0.49 +0.8
91,028 + CCNA_00085 0.49 +0.3
91,028 + CCNA_00085 0.49 +1.9
91,036 - CCNA_00085 0.50 +0.7
91,063 + CCNA_00085 0.54 -0.2
91,063 + CCNA_00085 0.54 +1.2
91,071 - CCNA_00085 0.55 -0.0
91,071 - CCNA_00085 0.55 +1.7
91,076 - CCNA_00085 0.55 +0.3
91,101 + CCNA_00085 0.59 +0.7
91,101 + CCNA_00085 0.59 +0.2
91,101 + CCNA_00085 0.59 -0.2
91,101 + CCNA_00085 0.59 -0.2
91,109 - CCNA_00085 0.60 -0.1
91,109 - CCNA_00085 0.60 -0.3
91,109 - CCNA_00085 0.60 -2.3
91,109 - CCNA_00085 0.60 +0.4
91,119 + CCNA_00085 0.61 +1.1
91,119 + CCNA_00085 0.61 -0.6
91,127 - CCNA_00085 0.62 +0.9
91,127 - CCNA_00085 0.62 -0.2
91,128 - CCNA_00085 0.62 +0.7
91,128 - CCNA_00085 0.62 +0.3
91,152 - CCNA_00085 0.65 +2.1
91,152 - CCNA_00085 0.65 -1.1
91,152 - CCNA_00085 0.65 +0.3
91,171 - CCNA_00085 0.68 +0.0
91,171 - CCNA_00085 0.68 -0.4
91,171 - CCNA_00085 0.68 +0.6
91,171 - CCNA_00085 0.68 +0.0
91,171 - CCNA_00085 0.68 +0.2
91,171 - CCNA_00085 0.68 -0.2
91,185 + CCNA_00085 0.70 -0.1
91,209 + CCNA_00085 0.73 +1.3
91,216 - CCNA_00085 0.74 +0.5
91,216 - CCNA_00085 0.74 +0.1
91,223 + CCNA_00085 0.75 -0.6
91,269 + CCNA_00085 0.81 -0.4
91,277 - CCNA_00085 0.82 +0.1
91,287 + CCNA_00085 0.83 +0.3
91,301 + CCNA_00085 0.85 -0.5
91,334 + CCNA_00085 0.89 -0.3
91,342 - +0.2
91,362 + -0.3
91,362 + +0.7
91,372 + -0.4
91,380 - +1.0
91,380 - +0.3
91,380 - -0.0
91,401 - +0.6
91,472 - -0.1
91,687 - -1.9
91,814 - +0.3
94,023 - CCNA_00086 0.53 +1.2
96,394 + -1.3
96,416 - -0.1
96,430 - -0.7
96,494 - +0.7
96,511 + -2.5
96,537 + +0.3
96,545 - -2.0
96,545 - +0.2
96,550 - -0.4
96,576 + +1.6
96,586 + +1.6
96,586 + -0.8
96,594 - +1.2
96,594 - +0.4
96,613 + +1.2
96,629 + +0.6
96,653 + +0.2
96,658 + +0.0
96,658 + +0.2
96,670 + -0.6
96,678 - +0.2
96,719 + +0.1
96,719 + -0.3
96,727 - +0.0
96,727 - +0.9
96,729 + -1.2
96,737 - +1.2
96,737 - -0.1
96,742 - CCNA_00087 0.10 -0.1
96,742 - CCNA_00087 0.10 -0.1
96,742 - CCNA_00087 0.10 -0.5
96,808 - CCNA_00087 0.16 -0.3
96,809 + CCNA_00087 0.16 -1.1
96,817 - CCNA_00087 0.17 +0.7
96,854 + CCNA_00087 0.20 -1.2
96,868 - CCNA_00087 0.22 +0.3
96,911 + CCNA_00087 0.25 -1.2
96,947 + CCNA_00087 0.29 -0.9
96,994 + CCNA_00087 0.33 -1.1
97,002 - CCNA_00087 0.34 +0.1
97,032 - CCNA_00087 0.36 +0.7
97,039 + CCNA_00087 0.37 -2.1
97,042 - CCNA_00087 0.37 +0.2
97,047 - CCNA_00087 0.38 +0.2
97,054 - CCNA_00087 0.38 +0.5
97,059 - CCNA_00087 0.39 -0.0
97,059 - CCNA_00087 0.39 -0.5
97,073 + CCNA_00087 0.40 -1.3
97,126 + CCNA_00087 0.45 -1.7
97,126 + CCNA_00087 0.45 +0.0
97,134 - CCNA_00087 0.46 +0.5
97,139 - CCNA_00087 0.46 +0.2
97,139 - CCNA_00087 0.46 +0.7
97,151 + CCNA_00087 0.47 +0.5
97,182 + CCNA_00087 0.50 -1.7
97,190 - CCNA_00087 0.51 -0.2
97,243 - CCNA_00087 0.55 -1.3
97,247 - CCNA_00087 0.56 +0.5
97,250 + CCNA_00087 0.56 +0.2
97,285 + CCNA_00087 0.59 -2.0

Or see this region's nucleotide sequence