Experiment: PYE no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00039 and CCNA_00040 are separated by 38 nucleotides CCNA_00040 and CCNA_00041 are separated by 73 nucleotides CCNA_00041 and CCNA_00042 are separated by 278 nucleotides
CCNA_00039: CCNA_00039 - hypothetical protein, at 41,403 to 41,921
_00039
CCNA_00040: CCNA_00040 - YcxB-like membrane protein, at 41,960 to 42,511
_00040
CCNA_00041: CCNA_00041 - protein translation initiation factor 2 IF-2, at 42,585 to 45,614
_00041
CCNA_00042: CCNA_00042 - RNA-binding protein, YlxR family, at 45,893 to 46,543
_00042
Position (kb) 42
43
44
45
46 Strain fitness (log2 ratio) -2
-1
0
1 at 41.592 kb on + strand, within CCNA_00039 at 41.625 kb on + strand, within CCNA_00039 at 41.625 kb on + strand, within CCNA_00039 at 41.625 kb on + strand, within CCNA_00039 at 41.625 kb on + strand, within CCNA_00039 at 41.625 kb on + strand, within CCNA_00039 at 41.633 kb on - strand, within CCNA_00039 at 41.633 kb on - strand, within CCNA_00039 at 41.633 kb on - strand, within CCNA_00039 at 41.633 kb on - strand, within CCNA_00039 at 41.633 kb on - strand, within CCNA_00039 at 41.633 kb on - strand, within CCNA_00039 at 41.649 kb on + strand, within CCNA_00039 at 41.694 kb on + strand, within CCNA_00039 at 41.694 kb on + strand, within CCNA_00039 at 41.694 kb on + strand, within CCNA_00039 at 41.702 kb on - strand, within CCNA_00039 at 41.702 kb on - strand, within CCNA_00039 at 41.702 kb on - strand, within CCNA_00039 at 41.702 kb on - strand, within CCNA_00039 at 41.702 kb on - strand, within CCNA_00039 at 41.702 kb on - strand, within CCNA_00039 at 41.702 kb on - strand, within CCNA_00039 at 41.835 kb on + strand, within CCNA_00039 at 41.871 kb on - strand at 41.899 kb on - strand at 41.955 kb on + strand at 41.958 kb on - strand at 41.966 kb on - strand at 41.966 kb on - strand at 41.968 kb on + strand at 41.971 kb on - strand at 41.972 kb on - strand at 41.976 kb on - strand at 41.991 kb on - strand at 42.006 kb on + strand at 42.072 kb on - strand, within CCNA_00040 at 42.082 kb on + strand, within CCNA_00040 at 42.084 kb on + strand, within CCNA_00040 at 42.097 kb on - strand, within CCNA_00040 at 42.112 kb on + strand, within CCNA_00040 at 42.118 kb on + strand, within CCNA_00040 at 42.118 kb on + strand, within CCNA_00040 at 42.128 kb on + strand, within CCNA_00040 at 42.128 kb on + strand, within CCNA_00040 at 42.138 kb on + strand, within CCNA_00040 at 42.157 kb on + strand, within CCNA_00040 at 42.157 kb on + strand, within CCNA_00040 at 42.158 kb on - strand, within CCNA_00040 at 42.165 kb on - strand, within CCNA_00040 at 42.178 kb on + strand, within CCNA_00040 at 42.182 kb on - strand, within CCNA_00040 at 42.191 kb on - strand, within CCNA_00040 at 42.258 kb on - strand, within CCNA_00040 at 42.266 kb on - strand, within CCNA_00040 at 42.292 kb on + strand, within CCNA_00040 at 42.300 kb on - strand, within CCNA_00040 at 42.300 kb on - strand, within CCNA_00040 at 42.400 kb on - strand, within CCNA_00040 at 42.400 kb on - strand, within CCNA_00040 at 42.543 kb on - strand at 42.557 kb on + strand at 42.565 kb on + strand at 42.566 kb on - strand at 42.566 kb on - strand at 42.598 kb on + strand at 42.606 kb on - strand at 42.606 kb on - strand at 45.628 kb on - strand at 45.751 kb on - strand at 45.751 kb on - strand at 45.937 kb on - strand at 46.506 kb on + strand at 46.514 kb on - strand at 46.514 kb on - strand at 46.533 kb on + strand at 46.547 kb on - strand at 46.593 kb on - strand at 46.600 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE no stress control remove 41,592 + CCNA_00039 0.36 -0.3 41,625 + CCNA_00039 0.43 -1.3 41,625 + CCNA_00039 0.43 -0.3 41,625 + CCNA_00039 0.43 -0.3 41,625 + CCNA_00039 0.43 -1.4 41,625 + CCNA_00039 0.43 -1.4 41,633 - CCNA_00039 0.44 -0.8 41,633 - CCNA_00039 0.44 +0.0 41,633 - CCNA_00039 0.44 -0.9 41,633 - CCNA_00039 0.44 -0.4 41,633 - CCNA_00039 0.44 +0.0 41,633 - CCNA_00039 0.44 +0.0 41,649 + CCNA_00039 0.47 +0.2 41,694 + CCNA_00039 0.56 -0.6 41,694 + CCNA_00039 0.56 -1.0 41,694 + CCNA_00039 0.56 -0.0 41,702 - CCNA_00039 0.58 +0.0 41,702 - CCNA_00039 0.58 -0.6 41,702 - CCNA_00039 0.58 -0.4 41,702 - CCNA_00039 0.58 +0.6 41,702 - CCNA_00039 0.58 -0.2 41,702 - CCNA_00039 0.58 +0.6 41,702 - CCNA_00039 0.58 -0.1 41,835 + CCNA_00039 0.83 +0.6 41,871 - +0.1 41,899 - +0.3 41,955 + -1.4 41,958 - -0.3 41,966 - -0.2 41,966 - +0.7 41,968 + -1.7 41,971 - -0.1 41,972 - +0.4 41,976 - -0.0 41,991 - +0.1 42,006 + +0.2 42,072 - CCNA_00040 0.20 -0.9 42,082 + CCNA_00040 0.22 -0.6 42,084 + CCNA_00040 0.22 +0.4 42,097 - CCNA_00040 0.25 -0.7 42,112 + CCNA_00040 0.28 -0.9 42,118 + CCNA_00040 0.29 -0.2 42,118 + CCNA_00040 0.29 +1.7 42,128 + CCNA_00040 0.30 +0.7 42,128 + CCNA_00040 0.30 +0.3 42,138 + CCNA_00040 0.32 +1.3 42,157 + CCNA_00040 0.36 +0.3 42,157 + CCNA_00040 0.36 -0.1 42,158 - CCNA_00040 0.36 -0.5 42,165 - CCNA_00040 0.37 -0.6 42,178 + CCNA_00040 0.39 +0.3 42,182 - CCNA_00040 0.40 -0.1 42,191 - CCNA_00040 0.42 -0.2 42,258 - CCNA_00040 0.54 -0.4 42,266 - CCNA_00040 0.55 -0.5 42,292 + CCNA_00040 0.60 -2.5 42,300 - CCNA_00040 0.62 +0.3 42,300 - CCNA_00040 0.62 +0.2 42,400 - CCNA_00040 0.80 +0.3 42,400 - CCNA_00040 0.80 -0.1 42,543 - -1.0 42,557 + -2.5 42,565 + +0.1 42,566 - -0.1 42,566 - -0.5 42,598 + -2.6 42,606 - -0.3 42,606 - +0.4 45,628 - +0.2 45,751 - +0.6 45,751 - -0.6 45,937 - -0.7 46,506 + -2.3 46,514 - +0.0 46,514 - -1.4 46,533 + +1.0 46,547 - -0.9 46,593 - +0.8 46,600 + -0.9
Or see this region's nucleotide sequence