Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21210 and ABIE41_RS21215 overlap by 4 nucleotides ABIE41_RS21215 and ABIE41_RS21220 overlap by 1 nucleotides ABIE41_RS21220 and ABIE41_RS21225 overlap by 1 nucleotides ABIE41_RS21225 and ABIE41_RS21230 are separated by 94 nucleotides ABIE41_RS21230 and ABIE41_RS21235 are separated by 86 nucleotides
ABIE41_RS21210: ABIE41_RS21210 - uracil-DNA glycosylase family protein, at 4,360,118 to 4,360,744
_RS21210
ABIE41_RS21215: ABIE41_RS21215 - hypothetical protein, at 4,360,741 to 4,361,208
_RS21215
ABIE41_RS21220: ABIE41_RS21220 - hypothetical protein, at 4,361,208 to 4,361,678
_RS21220
ABIE41_RS21225: ABIE41_RS21225 - glutathione S-transferase, at 4,361,678 to 4,362,289
_RS21225
ABIE41_RS21230: ABIE41_RS21230 - thermonuclease family protein, at 4,362,384 to 4,362,935
_RS21230
ABIE41_RS21235: ABIE41_RS21235 - HAMP domain-containing sensor histidine kinase, at 4,363,022 to 4,364,539
_RS21235
Position (kb) 4361
4362
4363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4360.892 kb on + strand, within ABIE41_RS21215 at 4360.892 kb on + strand, within ABIE41_RS21215 at 4360.892 kb on + strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.955 kb on + strand, within ABIE41_RS21215 at 4360.959 kb on - strand, within ABIE41_RS21215 at 4360.959 kb on - strand, within ABIE41_RS21215 at 4361.276 kb on - strand, within ABIE41_RS21220 at 4361.276 kb on - strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.373 kb on - strand, within ABIE41_RS21220 at 4361.431 kb on + strand, within ABIE41_RS21220 at 4361.431 kb on + strand, within ABIE41_RS21220 at 4361.432 kb on - strand, within ABIE41_RS21220 at 4361.432 kb on - strand, within ABIE41_RS21220 at 4361.434 kb on + strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.437 kb on + strand, within ABIE41_RS21220 at 4361.437 kb on + strand, within ABIE41_RS21220 at 4361.554 kb on + strand, within ABIE41_RS21220 at 4361.555 kb on - strand, within ABIE41_RS21220 at 4361.797 kb on + strand, within ABIE41_RS21225 at 4361.798 kb on - strand, within ABIE41_RS21225 at 4362.072 kb on + strand, within ABIE41_RS21225 at 4362.073 kb on - strand, within ABIE41_RS21225 at 4362.280 kb on - strand at 4362.280 kb on - strand at 4362.280 kb on - strand at 4362.373 kb on + strand at 4362.373 kb on + strand at 4362.373 kb on + strand at 4362.374 kb on - strand at 4362.374 kb on - strand at 4362.374 kb on - strand at 4362.482 kb on - strand, within ABIE41_RS21230 at 4362.491 kb on - strand, within ABIE41_RS21230 at 4362.572 kb on - strand, within ABIE41_RS21230 at 4362.947 kb on + strand at 4362.948 kb on - strand at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.272 kb on - strand, within ABIE41_RS21235
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 4,360,892 + ABIE41_RS21215 0.32 +0.1 4,360,892 + ABIE41_RS21215 0.32 +0.2 4,360,892 + ABIE41_RS21215 0.32 -2.2 4,360,893 - ABIE41_RS21215 0.32 -0.6 4,360,893 - ABIE41_RS21215 0.32 -0.2 4,360,893 - ABIE41_RS21215 0.32 +2.3 4,360,893 - ABIE41_RS21215 0.32 -0.9 4,360,893 - ABIE41_RS21215 0.32 -0.3 4,360,955 + ABIE41_RS21215 0.46 -0.6 4,360,959 - ABIE41_RS21215 0.47 +0.5 4,360,959 - ABIE41_RS21215 0.47 +0.8 4,361,276 - ABIE41_RS21220 0.14 -0.6 4,361,276 - ABIE41_RS21220 0.14 -2.0 4,361,371 + ABIE41_RS21220 0.35 +0.7 4,361,371 + ABIE41_RS21220 0.35 +0.7 4,361,371 + ABIE41_RS21220 0.35 -0.3 4,361,371 + ABIE41_RS21220 0.35 +0.6 4,361,372 - ABIE41_RS21220 0.35 -0.1 4,361,372 - ABIE41_RS21220 0.35 -1.0 4,361,372 - ABIE41_RS21220 0.35 +0.4 4,361,372 - ABIE41_RS21220 0.35 +0.8 4,361,372 - ABIE41_RS21220 0.35 +1.8 4,361,373 - ABIE41_RS21220 0.35 -0.9 4,361,431 + ABIE41_RS21220 0.47 -0.4 4,361,431 + ABIE41_RS21220 0.47 -0.5 4,361,432 - ABIE41_RS21220 0.48 -0.4 4,361,432 - ABIE41_RS21220 0.48 +1.0 4,361,434 + ABIE41_RS21220 0.48 +0.4 4,361,435 - ABIE41_RS21220 0.48 +0.5 4,361,435 - ABIE41_RS21220 0.48 -0.4 4,361,435 - ABIE41_RS21220 0.48 -0.5 4,361,435 - ABIE41_RS21220 0.48 +0.1 4,361,437 + ABIE41_RS21220 0.49 +0.5 4,361,437 + ABIE41_RS21220 0.49 -0.3 4,361,554 + ABIE41_RS21220 0.73 -0.2 4,361,555 - ABIE41_RS21220 0.74 +0.7 4,361,797 + ABIE41_RS21225 0.19 -0.6 4,361,798 - ABIE41_RS21225 0.20 +0.1 4,362,072 + ABIE41_RS21225 0.64 -1.7 4,362,073 - ABIE41_RS21225 0.65 -1.0 4,362,280 - -0.0 4,362,280 - +0.1 4,362,280 - -0.0 4,362,373 + +0.1 4,362,373 + +0.7 4,362,373 + -0.2 4,362,374 - -0.6 4,362,374 - +1.6 4,362,374 - -1.2 4,362,482 - ABIE41_RS21230 0.18 -3.4 4,362,491 - ABIE41_RS21230 0.19 -0.7 4,362,572 - ABIE41_RS21230 0.34 +0.1 4,362,947 + -0.4 4,362,948 - -0.7 4,363,271 + ABIE41_RS21235 0.16 +0.2 4,363,271 + ABIE41_RS21235 0.16 -1.2 4,363,271 + ABIE41_RS21235 0.16 -0.3 4,363,271 + ABIE41_RS21235 0.16 +0.7 4,363,271 + ABIE41_RS21235 0.16 -0.5 4,363,272 - ABIE41_RS21235 0.16 +1.0
Or see this region's nucleotide sequence