Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21200 and ABIE41_RS21205 are separated by 154 nucleotides ABIE41_RS21205 and ABIE41_RS21210 are separated by 25 nucleotides ABIE41_RS21210 and ABIE41_RS21215 overlap by 4 nucleotides ABIE41_RS21215 and ABIE41_RS21220 overlap by 1 nucleotides ABIE41_RS21220 and ABIE41_RS21225 overlap by 1 nucleotides
ABIE41_RS21200: ABIE41_RS21200 - TRAP transporter substrate-binding protein, at 4,358,457 to 4,359,551
_RS21200
ABIE41_RS21205: ABIE41_RS21205 - hypothetical protein, at 4,359,706 to 4,360,092
_RS21205
ABIE41_RS21210: ABIE41_RS21210 - uracil-DNA glycosylase family protein, at 4,360,118 to 4,360,744
_RS21210
ABIE41_RS21215: ABIE41_RS21215 - hypothetical protein, at 4,360,741 to 4,361,208
_RS21215
ABIE41_RS21220: ABIE41_RS21220 - hypothetical protein, at 4,361,208 to 4,361,678
_RS21220
ABIE41_RS21225: ABIE41_RS21225 - glutathione S-transferase, at 4,361,678 to 4,362,289
_RS21225
Position (kb)
4360
4361 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4359.150 kb on + strand, within ABIE41_RS21200 at 4359.150 kb on + strand, within ABIE41_RS21200 at 4359.151 kb on - strand, within ABIE41_RS21200 at 4359.151 kb on - strand, within ABIE41_RS21200 at 4359.151 kb on - strand, within ABIE41_RS21200 at 4359.151 kb on - strand, within ABIE41_RS21200 at 4359.151 kb on - strand, within ABIE41_RS21200 at 4359.151 kb on - strand, within ABIE41_RS21200 at 4359.151 kb on - strand, within ABIE41_RS21200 at 4359.153 kb on + strand, within ABIE41_RS21200 at 4359.235 kb on - strand, within ABIE41_RS21200 at 4359.235 kb on - strand, within ABIE41_RS21200 at 4359.291 kb on + strand, within ABIE41_RS21200 at 4359.291 kb on + strand, within ABIE41_RS21200 at 4359.291 kb on + strand, within ABIE41_RS21200 at 4359.291 kb on + strand, within ABIE41_RS21200 at 4359.291 kb on + strand, within ABIE41_RS21200 at 4359.291 kb on + strand, within ABIE41_RS21200 at 4359.292 kb on - strand, within ABIE41_RS21200 at 4359.402 kb on + strand, within ABIE41_RS21200 at 4359.403 kb on - strand, within ABIE41_RS21200 at 4359.403 kb on - strand, within ABIE41_RS21200 at 4359.403 kb on - strand, within ABIE41_RS21200 at 4359.445 kb on - strand at 4359.445 kb on - strand at 4359.477 kb on + strand at 4359.477 kb on + strand at 4359.478 kb on - strand at 4359.502 kb on - strand at 4359.502 kb on - strand at 4359.502 kb on - strand at 4359.502 kb on - strand at 4359.502 kb on - strand at 4359.508 kb on - strand at 4359.508 kb on - strand at 4359.862 kb on + strand, within ABIE41_RS21205 at 4360.078 kb on + strand at 4360.078 kb on + strand at 4360.078 kb on + strand at 4360.078 kb on + strand at 4360.078 kb on + strand at 4360.079 kb on - strand at 4360.079 kb on - strand at 4360.084 kb on + strand at 4360.084 kb on + strand at 4360.120 kb on - strand at 4360.332 kb on + strand, within ABIE41_RS21210 at 4360.332 kb on + strand, within ABIE41_RS21210 at 4360.332 kb on + strand, within ABIE41_RS21210 at 4360.332 kb on + strand, within ABIE41_RS21210 at 4360.332 kb on + strand, within ABIE41_RS21210 at 4360.333 kb on - strand, within ABIE41_RS21210 at 4360.495 kb on - strand, within ABIE41_RS21210 at 4360.892 kb on + strand, within ABIE41_RS21215 at 4360.892 kb on + strand, within ABIE41_RS21215 at 4360.892 kb on + strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.893 kb on - strand, within ABIE41_RS21215 at 4360.955 kb on + strand, within ABIE41_RS21215 at 4360.959 kb on - strand, within ABIE41_RS21215 at 4360.959 kb on - strand, within ABIE41_RS21215 at 4361.276 kb on - strand, within ABIE41_RS21220 at 4361.276 kb on - strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.371 kb on + strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.372 kb on - strand, within ABIE41_RS21220 at 4361.373 kb on - strand, within ABIE41_RS21220 at 4361.431 kb on + strand, within ABIE41_RS21220 at 4361.431 kb on + strand, within ABIE41_RS21220 at 4361.432 kb on - strand, within ABIE41_RS21220 at 4361.432 kb on - strand, within ABIE41_RS21220 at 4361.434 kb on + strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.437 kb on + strand, within ABIE41_RS21220 at 4361.437 kb on + strand, within ABIE41_RS21220 at 4361.554 kb on + strand, within ABIE41_RS21220 at 4361.555 kb on - strand, within ABIE41_RS21220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 4,359,150 + ABIE41_RS21200 0.63 -0.9 4,359,150 + ABIE41_RS21200 0.63 +0.4 4,359,151 - ABIE41_RS21200 0.63 +0.4 4,359,151 - ABIE41_RS21200 0.63 +0.3 4,359,151 - ABIE41_RS21200 0.63 +1.0 4,359,151 - ABIE41_RS21200 0.63 +0.2 4,359,151 - ABIE41_RS21200 0.63 -0.2 4,359,151 - ABIE41_RS21200 0.63 -1.9 4,359,151 - ABIE41_RS21200 0.63 -0.7 4,359,153 + ABIE41_RS21200 0.64 -0.9 4,359,235 - ABIE41_RS21200 0.71 +0.8 4,359,235 - ABIE41_RS21200 0.71 -0.9 4,359,291 + ABIE41_RS21200 0.76 +2.2 4,359,291 + ABIE41_RS21200 0.76 +0.1 4,359,291 + ABIE41_RS21200 0.76 -2.0 4,359,291 + ABIE41_RS21200 0.76 -0.3 4,359,291 + ABIE41_RS21200 0.76 -0.7 4,359,291 + ABIE41_RS21200 0.76 +0.6 4,359,292 - ABIE41_RS21200 0.76 +0.5 4,359,402 + ABIE41_RS21200 0.86 +0.4 4,359,403 - ABIE41_RS21200 0.86 -0.3 4,359,403 - ABIE41_RS21200 0.86 -1.0 4,359,403 - ABIE41_RS21200 0.86 +0.5 4,359,445 - +0.9 4,359,445 - +0.1 4,359,477 + +0.8 4,359,477 + -1.4 4,359,478 - +0.4 4,359,502 - -0.4 4,359,502 - +1.2 4,359,502 - +0.9 4,359,502 - +1.0 4,359,502 - -0.1 4,359,508 - -0.0 4,359,508 - -0.6 4,359,862 + ABIE41_RS21205 0.40 -0.1 4,360,078 + -1.0 4,360,078 + +0.3 4,360,078 + -0.4 4,360,078 + -0.7 4,360,078 + -0.9 4,360,079 - -0.3 4,360,079 - -0.3 4,360,084 + -0.0 4,360,084 + -0.1 4,360,120 - +0.9 4,360,332 + ABIE41_RS21210 0.34 -0.4 4,360,332 + ABIE41_RS21210 0.34 +0.4 4,360,332 + ABIE41_RS21210 0.34 -0.7 4,360,332 + ABIE41_RS21210 0.34 -1.2 4,360,332 + ABIE41_RS21210 0.34 -1.0 4,360,333 - ABIE41_RS21210 0.34 -1.5 4,360,495 - ABIE41_RS21210 0.60 +0.7 4,360,892 + ABIE41_RS21215 0.32 +0.1 4,360,892 + ABIE41_RS21215 0.32 +0.2 4,360,892 + ABIE41_RS21215 0.32 -2.2 4,360,893 - ABIE41_RS21215 0.32 -0.6 4,360,893 - ABIE41_RS21215 0.32 -0.2 4,360,893 - ABIE41_RS21215 0.32 +2.3 4,360,893 - ABIE41_RS21215 0.32 -0.9 4,360,893 - ABIE41_RS21215 0.32 -0.3 4,360,955 + ABIE41_RS21215 0.46 -0.6 4,360,959 - ABIE41_RS21215 0.47 +0.5 4,360,959 - ABIE41_RS21215 0.47 +0.8 4,361,276 - ABIE41_RS21220 0.14 -0.6 4,361,276 - ABIE41_RS21220 0.14 -2.0 4,361,371 + ABIE41_RS21220 0.35 +0.7 4,361,371 + ABIE41_RS21220 0.35 +0.7 4,361,371 + ABIE41_RS21220 0.35 -0.3 4,361,371 + ABIE41_RS21220 0.35 +0.6 4,361,372 - ABIE41_RS21220 0.35 -0.1 4,361,372 - ABIE41_RS21220 0.35 -1.0 4,361,372 - ABIE41_RS21220 0.35 +0.4 4,361,372 - ABIE41_RS21220 0.35 +0.8 4,361,372 - ABIE41_RS21220 0.35 +1.8 4,361,373 - ABIE41_RS21220 0.35 -0.9 4,361,431 + ABIE41_RS21220 0.47 -0.4 4,361,431 + ABIE41_RS21220 0.47 -0.5 4,361,432 - ABIE41_RS21220 0.48 -0.4 4,361,432 - ABIE41_RS21220 0.48 +1.0 4,361,434 + ABIE41_RS21220 0.48 +0.4 4,361,435 - ABIE41_RS21220 0.48 +0.5 4,361,435 - ABIE41_RS21220 0.48 -0.4 4,361,435 - ABIE41_RS21220 0.48 -0.5 4,361,435 - ABIE41_RS21220 0.48 +0.1 4,361,437 + ABIE41_RS21220 0.49 +0.5 4,361,437 + ABIE41_RS21220 0.49 -0.3 4,361,554 + ABIE41_RS21220 0.73 -0.2 4,361,555 - ABIE41_RS21220 0.74 +0.7
Or see this region's nucleotide sequence