Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19280

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19275 and ABIE41_RS19280 are separated by 140 nucleotidesABIE41_RS19280 and ABIE41_RS19285 are separated by 311 nucleotides ABIE41_RS19275: ABIE41_RS19275 - COX15/CtaA family protein, at 3,976,519 to 3,977,586 _RS19275 ABIE41_RS19280: ABIE41_RS19280 - DUF2842 domain-containing protein, at 3,977,727 to 3,977,939 _RS19280 ABIE41_RS19285: ABIE41_RS19285 - polysaccharide deacetylase family protein, at 3,978,251 to 3,979,303 _RS19285 Position (kb) 3977 3978Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3976.763 kb on + strand, within ABIE41_RS19275at 3976.764 kb on - strand, within ABIE41_RS19275at 3976.764 kb on - strand, within ABIE41_RS19275at 3976.893 kb on - strand, within ABIE41_RS19275at 3977.243 kb on + strand, within ABIE41_RS19275at 3977.243 kb on + strand, within ABIE41_RS19275at 3977.243 kb on + strand, within ABIE41_RS19275at 3977.244 kb on - strand, within ABIE41_RS19275at 3977.294 kb on + strand, within ABIE41_RS19275at 3977.294 kb on + strand, within ABIE41_RS19275at 3977.295 kb on - strand, within ABIE41_RS19275at 3977.295 kb on - strand, within ABIE41_RS19275at 3977.342 kb on + strand, within ABIE41_RS19275at 3977.342 kb on + strand, within ABIE41_RS19275at 3977.342 kb on + strand, within ABIE41_RS19275at 3977.343 kb on - strand, within ABIE41_RS19275at 3977.361 kb on - strand, within ABIE41_RS19275at 3977.489 kb on - strandat 3977.489 kb on - strandat 3977.489 kb on - strandat 3977.489 kb on - strandat 3977.646 kb on + strandat 3977.646 kb on + strandat 3977.647 kb on - strandat 3977.647 kb on - strandat 3977.647 kb on - strandat 3977.787 kb on + strand, within ABIE41_RS19280at 3977.787 kb on + strand, within ABIE41_RS19280at 3977.788 kb on - strand, within ABIE41_RS19280at 3977.788 kb on - strand, within ABIE41_RS19280at 3977.859 kb on + strand, within ABIE41_RS19280at 3977.859 kb on + strand, within ABIE41_RS19280at 3977.860 kb on - strand, within ABIE41_RS19280at 3977.954 kb on + strandat 3977.954 kb on + strandat 3978.024 kb on + strandat 3978.135 kb on - strandat 3978.160 kb on + strandat 3978.237 kb on + strandat 3978.772 kb on - strand, within ABIE41_RS19285

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,976,763 + ABIE41_RS19275 0.23 +0.2
3,976,764 - ABIE41_RS19275 0.23 +1.1
3,976,764 - ABIE41_RS19275 0.23 +0.9
3,976,893 - ABIE41_RS19275 0.35 -0.9
3,977,243 + ABIE41_RS19275 0.68 -1.3
3,977,243 + ABIE41_RS19275 0.68 -0.4
3,977,243 + ABIE41_RS19275 0.68 +0.9
3,977,244 - ABIE41_RS19275 0.68 -0.6
3,977,294 + ABIE41_RS19275 0.73 -1.1
3,977,294 + ABIE41_RS19275 0.73 -0.1
3,977,295 - ABIE41_RS19275 0.73 -0.8
3,977,295 - ABIE41_RS19275 0.73 -1.6
3,977,342 + ABIE41_RS19275 0.77 -0.7
3,977,342 + ABIE41_RS19275 0.77 -0.8
3,977,342 + ABIE41_RS19275 0.77 -0.3
3,977,343 - ABIE41_RS19275 0.77 +0.1
3,977,361 - ABIE41_RS19275 0.79 -0.5
3,977,489 - -0.3
3,977,489 - -0.6
3,977,489 - -0.5
3,977,489 - -0.4
3,977,646 + +1.1
3,977,646 + +1.9
3,977,647 - +0.9
3,977,647 - +1.9
3,977,647 - +0.1
3,977,787 + ABIE41_RS19280 0.28 +0.3
3,977,787 + ABIE41_RS19280 0.28 -0.4
3,977,788 - ABIE41_RS19280 0.29 +0.9
3,977,788 - ABIE41_RS19280 0.29 +0.0
3,977,859 + ABIE41_RS19280 0.62 -0.3
3,977,859 + ABIE41_RS19280 0.62 -1.2
3,977,860 - ABIE41_RS19280 0.62 -0.9
3,977,954 + -1.4
3,977,954 + -0.6
3,978,024 + -0.9
3,978,135 - +0.1
3,978,160 + -0.4
3,978,237 + -2.2
3,978,772 - ABIE41_RS19285 0.49 -3.2

Or see this region's nucleotide sequence