Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14140 and ABIE41_RS14145 overlap by 4 nucleotides ABIE41_RS14145 and ABIE41_RS14150 are separated by 7 nucleotides ABIE41_RS14150 and ABIE41_RS14155 are separated by 83 nucleotides
ABIE41_RS14140: ABIE41_RS14140 - lytic transglycosylase domain-containing protein, at 2,897,021 to 2,898,100
_RS14140
ABIE41_RS14145: ABIE41_RS14145 - DUF2336 domain-containing protein, at 2,898,097 to 2,899,311
_RS14145
ABIE41_RS14150: ABIE41_RS14150 - carboxymuconolactone decarboxylase family protein, at 2,899,319 to 2,899,735
_RS14150
ABIE41_RS14155: ABIE41_RS14155 - NAD kinase, at 2,899,819 to 2,900,592
_RS14155
Position (kb)
2898
2899
2900 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2897.271 kb on - strand, within ABIE41_RS14140 at 2897.453 kb on + strand, within ABIE41_RS14140 at 2897.453 kb on + strand, within ABIE41_RS14140 at 2897.453 kb on + strand, within ABIE41_RS14140 at 2897.453 kb on + strand, within ABIE41_RS14140 at 2897.453 kb on + strand, within ABIE41_RS14140 at 2897.453 kb on + strand, within ABIE41_RS14140 at 2897.454 kb on - strand, within ABIE41_RS14140 at 2897.454 kb on - strand, within ABIE41_RS14140 at 2897.454 kb on - strand, within ABIE41_RS14140 at 2897.454 kb on - strand, within ABIE41_RS14140 at 2897.454 kb on - strand, within ABIE41_RS14140 at 2897.454 kb on - strand, within ABIE41_RS14140 at 2897.615 kb on + strand, within ABIE41_RS14140 at 2897.616 kb on - strand, within ABIE41_RS14140 at 2898.110 kb on - strand at 2898.182 kb on - strand at 2898.182 kb on - strand at 2898.182 kb on - strand at 2898.333 kb on - strand, within ABIE41_RS14145 at 2899.244 kb on - strand at 2899.643 kb on + strand, within ABIE41_RS14150 at 2899.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,897,271 - ABIE41_RS14140 0.23 -1.2 2,897,453 + ABIE41_RS14140 0.40 -2.9 2,897,453 + ABIE41_RS14140 0.40 +0.2 2,897,453 + ABIE41_RS14140 0.40 -0.4 2,897,453 + ABIE41_RS14140 0.40 -0.0 2,897,453 + ABIE41_RS14140 0.40 +0.2 2,897,453 + ABIE41_RS14140 0.40 -0.8 2,897,454 - ABIE41_RS14140 0.40 -2.6 2,897,454 - ABIE41_RS14140 0.40 +2.0 2,897,454 - ABIE41_RS14140 0.40 -0.0 2,897,454 - ABIE41_RS14140 0.40 +1.1 2,897,454 - ABIE41_RS14140 0.40 +0.1 2,897,454 - ABIE41_RS14140 0.40 -1.0 2,897,615 + ABIE41_RS14140 0.55 -0.9 2,897,616 - ABIE41_RS14140 0.55 -0.4 2,898,110 - -1.7 2,898,182 - -0.9 2,898,182 - +1.0 2,898,182 - -1.2 2,898,333 - ABIE41_RS14145 0.19 -0.5 2,899,244 - -0.1 2,899,643 + ABIE41_RS14150 0.78 -0.3 2,899,823 + +0.5
Or see this region's nucleotide sequence