Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03180

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS03170 and ABIE41_RS03175 are separated by 71 nucleotidesABIE41_RS03175 and ABIE41_RS03180 are separated by 77 nucleotidesABIE41_RS03180 and ABIE41_RS03185 are separated by 194 nucleotidesABIE41_RS03185 and ABIE41_RS03190 are separated by 56 nucleotides ABIE41_RS03170: ABIE41_RS03170 - TIGR00645 family protein, at 664,477 to 665,064 _RS03170 ABIE41_RS03175: ABIE41_RS03175 - peptide-methionine (S)-S-oxide reductase MsrA, at 665,136 to 665,795 _RS03175 ABIE41_RS03180: ABIE41_RS03180 - PetM family of cytochrome b6f complex subunit 7, at 665,873 to 666,193 _RS03180 ABIE41_RS03185: ABIE41_RS03185 - tRNA-Ser, at 666,388 to 666,477 _RS03185 ABIE41_RS03190: ABIE41_RS03190 - CPBP family intramembrane glutamic endopeptidase, at 666,534 to 667,403 _RS03190 Position (kb) 665 666 667Strain fitness (log2 ratio) -2 -1 0 1 2at 664.955 kb on + strand, within ABIE41_RS03170at 664.955 kb on + strand, within ABIE41_RS03170at 664.955 kb on + strand, within ABIE41_RS03170at 664.955 kb on + strand, within ABIE41_RS03170at 664.956 kb on - strand, within ABIE41_RS03170at 664.956 kb on - strand, within ABIE41_RS03170at 664.956 kb on - strand, within ABIE41_RS03170at 664.956 kb on - strand, within ABIE41_RS03170at 664.956 kb on - strand, within ABIE41_RS03170at 664.956 kb on - strand, within ABIE41_RS03170at 664.956 kb on - strand, within ABIE41_RS03170at 665.233 kb on + strand, within ABIE41_RS03175at 665.234 kb on - strand, within ABIE41_RS03175at 665.248 kb on + strand, within ABIE41_RS03175at 665.248 kb on + strand, within ABIE41_RS03175at 665.248 kb on + strand, within ABIE41_RS03175at 665.248 kb on + strand, within ABIE41_RS03175at 665.249 kb on - strand, within ABIE41_RS03175at 665.249 kb on - strand, within ABIE41_RS03175at 665.249 kb on - strand, within ABIE41_RS03175at 665.249 kb on - strand, within ABIE41_RS03175at 665.282 kb on + strand, within ABIE41_RS03175at 665.282 kb on + strand, within ABIE41_RS03175at 665.282 kb on + strand, within ABIE41_RS03175at 665.282 kb on + strand, within ABIE41_RS03175at 665.282 kb on + strand, within ABIE41_RS03175at 665.283 kb on - strand, within ABIE41_RS03175at 665.283 kb on - strand, within ABIE41_RS03175at 665.283 kb on - strand, within ABIE41_RS03175at 665.283 kb on - strand, within ABIE41_RS03175at 665.318 kb on - strand, within ABIE41_RS03175at 665.368 kb on + strand, within ABIE41_RS03175at 665.368 kb on + strand, within ABIE41_RS03175at 665.368 kb on + strand, within ABIE41_RS03175at 665.368 kb on + strand, within ABIE41_RS03175at 665.368 kb on + strand, within ABIE41_RS03175at 665.368 kb on + strand, within ABIE41_RS03175at 665.368 kb on + strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.369 kb on - strand, within ABIE41_RS03175at 665.464 kb on + strand, within ABIE41_RS03175at 665.465 kb on - strand, within ABIE41_RS03175at 665.465 kb on - strand, within ABIE41_RS03175at 665.465 kb on - strand, within ABIE41_RS03175at 665.539 kb on + strand, within ABIE41_RS03175at 665.539 kb on + strand, within ABIE41_RS03175at 665.539 kb on + strand, within ABIE41_RS03175at 665.539 kb on + strand, within ABIE41_RS03175at 665.539 kb on + strand, within ABIE41_RS03175at 665.539 kb on + strand, within ABIE41_RS03175at 665.539 kb on + strand, within ABIE41_RS03175at 665.540 kb on - strand, within ABIE41_RS03175at 665.540 kb on - strand, within ABIE41_RS03175at 665.540 kb on - strand, within ABIE41_RS03175at 665.540 kb on - strand, within ABIE41_RS03175at 665.540 kb on - strand, within ABIE41_RS03175at 665.570 kb on - strand, within ABIE41_RS03175at 665.570 kb on - strand, within ABIE41_RS03175at 665.825 kb on + strandat 665.825 kb on + strandat 665.826 kb on - strandat 665.826 kb on - strandat 665.826 kb on - strandat 666.089 kb on - strand, within ABIE41_RS03180at 666.089 kb on - strand, within ABIE41_RS03180at 666.089 kb on - strand, within ABIE41_RS03180at 666.089 kb on - strand, within ABIE41_RS03180at 666.090 kb on + strand, within ABIE41_RS03180at 666.090 kb on + strand, within ABIE41_RS03180at 666.091 kb on - strand, within ABIE41_RS03180at 666.110 kb on + strand, within ABIE41_RS03180at 666.110 kb on + strand, within ABIE41_RS03180at 666.111 kb on - strand, within ABIE41_RS03180at 666.493 kb on + strandat 666.755 kb on + strand, within ABIE41_RS03190at 666.755 kb on + strand, within ABIE41_RS03190at 666.756 kb on - strand, within ABIE41_RS03190at 666.756 kb on - strand, within ABIE41_RS03190at 666.757 kb on + strand, within ABIE41_RS03190at 666.757 kb on + strand, within ABIE41_RS03190at 666.757 kb on + strand, within ABIE41_RS03190at 666.758 kb on - strand, within ABIE41_RS03190at 666.809 kb on + strand, within ABIE41_RS03190at 666.809 kb on + strand, within ABIE41_RS03190at 666.809 kb on + strand, within ABIE41_RS03190at 666.809 kb on + strand, within ABIE41_RS03190at 666.809 kb on + strand, within ABIE41_RS03190at 666.809 kb on + strand, within ABIE41_RS03190at 666.809 kb on + strand, within ABIE41_RS03190at 666.810 kb on - strand, within ABIE41_RS03190at 666.810 kb on - strand, within ABIE41_RS03190at 666.810 kb on - strand, within ABIE41_RS03190at 666.810 kb on - strand, within ABIE41_RS03190at 666.810 kb on - strand, within ABIE41_RS03190at 666.810 kb on - strand, within ABIE41_RS03190at 666.811 kb on + strand, within ABIE41_RS03190at 666.811 kb on + strand, within ABIE41_RS03190at 666.811 kb on + strand, within ABIE41_RS03190at 666.811 kb on + strand, within ABIE41_RS03190at 666.811 kb on + strand, within ABIE41_RS03190at 666.811 kb on + strand, within ABIE41_RS03190at 666.811 kb on + strand, within ABIE41_RS03190at 666.812 kb on - strand, within ABIE41_RS03190at 666.812 kb on - strand, within ABIE41_RS03190at 666.812 kb on - strand, within ABIE41_RS03190at 666.848 kb on + strand, within ABIE41_RS03190at 666.848 kb on + strand, within ABIE41_RS03190at 666.848 kb on + strand, within ABIE41_RS03190at 666.849 kb on - strand, within ABIE41_RS03190at 666.850 kb on + strand, within ABIE41_RS03190at 666.850 kb on + strand, within ABIE41_RS03190at 666.850 kb on + strand, within ABIE41_RS03190at 666.850 kb on + strand, within ABIE41_RS03190at 666.850 kb on + strand, within ABIE41_RS03190at 666.851 kb on - strand, within ABIE41_RS03190at 666.851 kb on - strand, within ABIE41_RS03190at 666.851 kb on - strand, within ABIE41_RS03190at 666.851 kb on - strand, within ABIE41_RS03190at 666.864 kb on + strand, within ABIE41_RS03190at 666.865 kb on - strand, within ABIE41_RS03190at 666.903 kb on + strand, within ABIE41_RS03190at 667.063 kb on + strand, within ABIE41_RS03190at 667.063 kb on + strand, within ABIE41_RS03190at 667.063 kb on + strand, within ABIE41_RS03190at 667.063 kb on + strand, within ABIE41_RS03190at 667.064 kb on - strand, within ABIE41_RS03190at 667.102 kb on + strand, within ABIE41_RS03190at 667.103 kb on - strand, within ABIE41_RS03190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
664,955 + ABIE41_RS03170 0.81 -0.2
664,955 + ABIE41_RS03170 0.81 -0.1
664,955 + ABIE41_RS03170 0.81 -0.3
664,955 + ABIE41_RS03170 0.81 +0.0
664,956 - ABIE41_RS03170 0.81 +0.6
664,956 - ABIE41_RS03170 0.81 +0.4
664,956 - ABIE41_RS03170 0.81 -1.1
664,956 - ABIE41_RS03170 0.81 +2.0
664,956 - ABIE41_RS03170 0.81 -1.5
664,956 - ABIE41_RS03170 0.81 -1.0
664,956 - ABIE41_RS03170 0.81 -0.8
665,233 + ABIE41_RS03175 0.15 +0.6
665,234 - ABIE41_RS03175 0.15 +0.3
665,248 + ABIE41_RS03175 0.17 -0.3
665,248 + ABIE41_RS03175 0.17 -1.3
665,248 + ABIE41_RS03175 0.17 +0.9
665,248 + ABIE41_RS03175 0.17 +2.0
665,249 - ABIE41_RS03175 0.17 +0.7
665,249 - ABIE41_RS03175 0.17 +0.2
665,249 - ABIE41_RS03175 0.17 -0.4
665,249 - ABIE41_RS03175 0.17 +0.3
665,282 + ABIE41_RS03175 0.22 +0.2
665,282 + ABIE41_RS03175 0.22 -0.5
665,282 + ABIE41_RS03175 0.22 +0.9
665,282 + ABIE41_RS03175 0.22 -0.1
665,282 + ABIE41_RS03175 0.22 +0.4
665,283 - ABIE41_RS03175 0.22 -1.1
665,283 - ABIE41_RS03175 0.22 -0.5
665,283 - ABIE41_RS03175 0.22 +2.6
665,283 - ABIE41_RS03175 0.22 +1.8
665,318 - ABIE41_RS03175 0.28 -0.4
665,368 + ABIE41_RS03175 0.35 +1.6
665,368 + ABIE41_RS03175 0.35 -0.5
665,368 + ABIE41_RS03175 0.35 +0.8
665,368 + ABIE41_RS03175 0.35 +0.0
665,368 + ABIE41_RS03175 0.35 -0.4
665,368 + ABIE41_RS03175 0.35 +2.0
665,368 + ABIE41_RS03175 0.35 +0.2
665,369 - ABIE41_RS03175 0.35 -1.0
665,369 - ABIE41_RS03175 0.35 +1.0
665,369 - ABIE41_RS03175 0.35 -0.5
665,369 - ABIE41_RS03175 0.35 -0.0
665,369 - ABIE41_RS03175 0.35 -1.0
665,369 - ABIE41_RS03175 0.35 +1.0
665,369 - ABIE41_RS03175 0.35 +0.2
665,369 - ABIE41_RS03175 0.35 +0.5
665,464 + ABIE41_RS03175 0.50 -1.8
665,465 - ABIE41_RS03175 0.50 +0.1
665,465 - ABIE41_RS03175 0.50 +0.4
665,465 - ABIE41_RS03175 0.50 +0.5
665,539 + ABIE41_RS03175 0.61 +0.9
665,539 + ABIE41_RS03175 0.61 -1.4
665,539 + ABIE41_RS03175 0.61 -0.0
665,539 + ABIE41_RS03175 0.61 -0.7
665,539 + ABIE41_RS03175 0.61 -0.1
665,539 + ABIE41_RS03175 0.61 +1.6
665,539 + ABIE41_RS03175 0.61 -0.9
665,540 - ABIE41_RS03175 0.61 -0.4
665,540 - ABIE41_RS03175 0.61 +0.2
665,540 - ABIE41_RS03175 0.61 -0.5
665,540 - ABIE41_RS03175 0.61 -0.4
665,540 - ABIE41_RS03175 0.61 +0.7
665,570 - ABIE41_RS03175 0.66 +0.2
665,570 - ABIE41_RS03175 0.66 +0.4
665,825 + +0.0
665,825 + -1.1
665,826 - +2.0
665,826 - -2.4
665,826 - -0.2
666,089 - ABIE41_RS03180 0.67 +0.3
666,089 - ABIE41_RS03180 0.67 +0.6
666,089 - ABIE41_RS03180 0.67 +0.7
666,089 - ABIE41_RS03180 0.67 +0.3
666,090 + ABIE41_RS03180 0.68 -1.4
666,090 + ABIE41_RS03180 0.68 +2.0
666,091 - ABIE41_RS03180 0.68 +0.5
666,110 + ABIE41_RS03180 0.74 -0.1
666,110 + ABIE41_RS03180 0.74 -0.1
666,111 - ABIE41_RS03180 0.74 +1.2
666,493 + +0.1
666,755 + ABIE41_RS03190 0.25 +0.6
666,755 + ABIE41_RS03190 0.25 +0.3
666,756 - ABIE41_RS03190 0.26 +0.3
666,756 - ABIE41_RS03190 0.26 +0.8
666,757 + ABIE41_RS03190 0.26 -0.3
666,757 + ABIE41_RS03190 0.26 -0.9
666,757 + ABIE41_RS03190 0.26 +0.2
666,758 - ABIE41_RS03190 0.26 -1.3
666,809 + ABIE41_RS03190 0.32 -0.5
666,809 + ABIE41_RS03190 0.32 -0.5
666,809 + ABIE41_RS03190 0.32 +0.3
666,809 + ABIE41_RS03190 0.32 +0.5
666,809 + ABIE41_RS03190 0.32 -0.8
666,809 + ABIE41_RS03190 0.32 +0.1
666,809 + ABIE41_RS03190 0.32 -0.5
666,810 - ABIE41_RS03190 0.32 -0.2
666,810 - ABIE41_RS03190 0.32 -1.0
666,810 - ABIE41_RS03190 0.32 +1.2
666,810 - ABIE41_RS03190 0.32 +0.3
666,810 - ABIE41_RS03190 0.32 +0.3
666,810 - ABIE41_RS03190 0.32 -1.0
666,811 + ABIE41_RS03190 0.32 +0.2
666,811 + ABIE41_RS03190 0.32 +0.4
666,811 + ABIE41_RS03190 0.32 +1.0
666,811 + ABIE41_RS03190 0.32 -0.5
666,811 + ABIE41_RS03190 0.32 +1.4
666,811 + ABIE41_RS03190 0.32 +0.6
666,811 + ABIE41_RS03190 0.32 +0.0
666,812 - ABIE41_RS03190 0.32 -2.3
666,812 - ABIE41_RS03190 0.32 +0.3
666,812 - ABIE41_RS03190 0.32 +0.0
666,848 + ABIE41_RS03190 0.36 +0.2
666,848 + ABIE41_RS03190 0.36 -0.2
666,848 + ABIE41_RS03190 0.36 -1.4
666,849 - ABIE41_RS03190 0.36 -0.1
666,850 + ABIE41_RS03190 0.36 -0.6
666,850 + ABIE41_RS03190 0.36 -0.8
666,850 + ABIE41_RS03190 0.36 -0.0
666,850 + ABIE41_RS03190 0.36 -1.3
666,850 + ABIE41_RS03190 0.36 -1.1
666,851 - ABIE41_RS03190 0.36 -0.3
666,851 - ABIE41_RS03190 0.36 +0.1
666,851 - ABIE41_RS03190 0.36 +0.7
666,851 - ABIE41_RS03190 0.36 -0.5
666,864 + ABIE41_RS03190 0.38 -0.5
666,865 - ABIE41_RS03190 0.38 -0.1
666,903 + ABIE41_RS03190 0.42 -0.5
667,063 + ABIE41_RS03190 0.61 -0.6
667,063 + ABIE41_RS03190 0.61 +0.1
667,063 + ABIE41_RS03190 0.61 -0.4
667,063 + ABIE41_RS03190 0.61 -1.3
667,064 - ABIE41_RS03190 0.61 -0.3
667,102 + ABIE41_RS03190 0.65 +0.1
667,103 - ABIE41_RS03190 0.65 -0.7

Or see this region's nucleotide sequence