Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01240

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01230 and ABIE41_RS01235 are separated by 500 nucleotidesABIE41_RS01235 and ABIE41_RS01240 are separated by 75 nucleotidesABIE41_RS01240 and ABIE41_RS01245 overlap by 11 nucleotidesABIE41_RS01245 and ABIE41_RS01250 overlap by 34 nucleotides ABIE41_RS01230: ABIE41_RS01230 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 245,126 to 248,056 _RS01230 ABIE41_RS01235: ABIE41_RS01235 - hypothetical protein, at 248,557 to 248,826 _RS01235 ABIE41_RS01240: ABIE41_RS01240 - DNA-3-methyladenine glycosylase, at 248,902 to 249,561 _RS01240 ABIE41_RS01245: ABIE41_RS01245 - CinA family protein, at 249,551 to 250,111 _RS01245 ABIE41_RS01250: ABIE41_RS01250 - SDR family oxidoreductase, at 250,078 to 250,484 _RS01250 Position (kb) 248 249 250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 248.173 kb on - strandat 248.277 kb on + strandat 248.277 kb on + strandat 248.277 kb on + strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.278 kb on - strandat 248.907 kb on + strandat 249.064 kb on + strand, within ABIE41_RS01240at 249.064 kb on + strand, within ABIE41_RS01240at 249.065 kb on - strand, within ABIE41_RS01240at 249.065 kb on - strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.164 kb on - strand, within ABIE41_RS01240at 249.164 kb on - strand, within ABIE41_RS01240at 249.649 kb on + strand, within ABIE41_RS01245at 249.649 kb on + strand, within ABIE41_RS01245at 249.649 kb on + strand, within ABIE41_RS01245at 249.650 kb on - strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.741 kb on - strand, within ABIE41_RS01245at 249.741 kb on - strand, within ABIE41_RS01245at 249.882 kb on + strand, within ABIE41_RS01245at 249.883 kb on - strand, within ABIE41_RS01245at 250.114 kb on + strandat 250.114 kb on + strandat 250.114 kb on + strandat 250.115 kb on - strandat 250.115 kb on - strandat 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.367 kb on + strand, within ABIE41_RS01250at 250.392 kb on + strand, within ABIE41_RS01250at 250.392 kb on + strand, within ABIE41_RS01250at 250.392 kb on + strand, within ABIE41_RS01250at 250.393 kb on - strand, within ABIE41_RS01250at 250.393 kb on - strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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248,173 - -0.8
248,277 + -0.6
248,277 + +0.1
248,277 + +0.2
248,278 - -0.3
248,278 - -0.4
248,278 - -0.5
248,278 - +0.1
248,278 - -0.3
248,907 + +0.6
249,064 + ABIE41_RS01240 0.25 +0.5
249,064 + ABIE41_RS01240 0.25 +0.7
249,065 - ABIE41_RS01240 0.25 +0.6
249,065 - ABIE41_RS01240 0.25 +0.1
249,148 + ABIE41_RS01240 0.37 +0.4
249,148 + ABIE41_RS01240 0.37 -0.7
249,148 + ABIE41_RS01240 0.37 +0.3
249,148 + ABIE41_RS01240 0.37 -0.1
249,148 + ABIE41_RS01240 0.37 -0.1
249,148 + ABIE41_RS01240 0.37 -0.1
249,148 + ABIE41_RS01240 0.37 +0.0
249,148 + ABIE41_RS01240 0.37 -1.0
249,148 + ABIE41_RS01240 0.37 -0.1
249,148 + ABIE41_RS01240 0.37 +0.0
249,148 + ABIE41_RS01240 0.37 -0.6
249,149 - ABIE41_RS01240 0.37 -0.8
249,149 - ABIE41_RS01240 0.37 +0.3
249,149 - ABIE41_RS01240 0.37 +1.4
249,149 - ABIE41_RS01240 0.37 -0.7
249,149 - ABIE41_RS01240 0.37 -0.0
249,149 - ABIE41_RS01240 0.37 +1.0
249,149 - ABIE41_RS01240 0.37 +0.1
249,149 - ABIE41_RS01240 0.37 +1.0
249,149 - ABIE41_RS01240 0.37 +0.1
249,163 + ABIE41_RS01240 0.40 -0.2
249,163 + ABIE41_RS01240 0.40 -0.3
249,163 + ABIE41_RS01240 0.40 -0.4
249,163 + ABIE41_RS01240 0.40 -0.1
249,164 - ABIE41_RS01240 0.40 +0.1
249,164 - ABIE41_RS01240 0.40 -0.6
249,649 + ABIE41_RS01245 0.17 -0.3
249,649 + ABIE41_RS01245 0.17 -2.1
249,649 + ABIE41_RS01245 0.17 -0.0
249,650 - ABIE41_RS01245 0.18 -0.2
249,740 + ABIE41_RS01245 0.34 -0.2
249,740 + ABIE41_RS01245 0.34 +0.3
249,740 + ABIE41_RS01245 0.34 +0.3
249,740 + ABIE41_RS01245 0.34 -0.8
249,740 + ABIE41_RS01245 0.34 -3.0
249,741 - ABIE41_RS01245 0.34 -0.2
249,741 - ABIE41_RS01245 0.34 -0.1
249,882 + ABIE41_RS01245 0.59 +0.3
249,883 - ABIE41_RS01245 0.59 -0.8
250,114 + +0.3
250,114 + +0.1
250,114 + +0.9
250,115 - -0.5
250,115 - -1.3
250,130 + ABIE41_RS01250 0.13 +0.3
250,130 + ABIE41_RS01250 0.13 -0.4
250,130 + ABIE41_RS01250 0.13 -1.3
250,130 + ABIE41_RS01250 0.13 -0.6
250,130 + ABIE41_RS01250 0.13 +1.2
250,130 + ABIE41_RS01250 0.13 -0.0
250,130 + ABIE41_RS01250 0.13 +0.0
250,130 + ABIE41_RS01250 0.13 -0.7
250,130 + ABIE41_RS01250 0.13 +1.9
250,130 + ABIE41_RS01250 0.13 +1.0
250,130 + ABIE41_RS01250 0.13 +1.4
250,130 + ABIE41_RS01250 0.13 -0.6
250,130 + ABIE41_RS01250 0.13 -0.4
250,130 + ABIE41_RS01250 0.13 -0.5
250,130 + ABIE41_RS01250 0.13 -0.3
250,131 - ABIE41_RS01250 0.13 +0.8
250,131 - ABIE41_RS01250 0.13 +1.6
250,131 - ABIE41_RS01250 0.13 -1.2
250,131 - ABIE41_RS01250 0.13 -0.8
250,131 - ABIE41_RS01250 0.13 -0.2
250,131 - ABIE41_RS01250 0.13 +0.1
250,131 - ABIE41_RS01250 0.13 -0.5
250,131 - ABIE41_RS01250 0.13 +1.0
250,131 - ABIE41_RS01250 0.13 -1.3
250,131 - ABIE41_RS01250 0.13 -0.3
250,131 - ABIE41_RS01250 0.13 +1.0
250,131 - ABIE41_RS01250 0.13 +1.3
250,131 - ABIE41_RS01250 0.13 +0.3
250,367 + ABIE41_RS01250 0.71 +0.2
250,392 + ABIE41_RS01250 0.77 +0.4
250,392 + ABIE41_RS01250 0.77 -0.1
250,392 + ABIE41_RS01250 0.77 -0.1
250,393 - ABIE41_RS01250 0.77 +0.2
250,393 - ABIE41_RS01250 0.77 -0.6
250,394 + ABIE41_RS01250 0.78 +1.0
250,394 + ABIE41_RS01250 0.78 +0.6
250,394 + ABIE41_RS01250 0.78 -0.2
250,394 + ABIE41_RS01250 0.78 -0.0
250,395 - ABIE41_RS01250 0.78 -0.2
250,395 - ABIE41_RS01250 0.78 -1.5
250,395 - ABIE41_RS01250 0.78 -1.0
250,395 - ABIE41_RS01250 0.78 -0.5
250,395 - ABIE41_RS01250 0.78 -0.4
250,395 - ABIE41_RS01250 0.78 -0.1
250,395 - ABIE41_RS01250 0.78 -0.9
250,395 - ABIE41_RS01250 0.78 +1.3

Or see this region's nucleotide sequence