Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25870

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25860 and ABID97_RS25865 overlap by 13 nucleotidesABID97_RS25865 and ABID97_RS25870 are separated by 1 nucleotidesABID97_RS25870 and ABID97_RS25875 are separated by 40 nucleotides ABID97_RS25860: ABID97_RS25860 - LysR family transcriptional regulator, at 92,404 to 93,282 _RS25860 ABID97_RS25865: ABID97_RS25865 - amidohydrolase family protein, at 93,270 to 94,166 _RS25865 ABID97_RS25870: ABID97_RS25870 - IlvD/Edd family dehydratase, at 94,168 to 95,922 _RS25870 ABID97_RS25875: ABID97_RS25875 - tripartite tricarboxylate transporter substrate binding protein, at 95,963 to 96,961 _RS25875 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1 2at 93.266 kb on - strandat 93.266 kb on - strandat 93.451 kb on + strand, within ABID97_RS25865at 93.452 kb on - strand, within ABID97_RS25865at 93.511 kb on + strand, within ABID97_RS25865at 93.533 kb on - strand, within ABID97_RS25865at 93.839 kb on + strand, within ABID97_RS25865at 94.042 kb on + strand, within ABID97_RS25865at 94.395 kb on - strand, within ABID97_RS25870at 94.395 kb on - strand, within ABID97_RS25870at 94.943 kb on + strand, within ABID97_RS25870at 94.943 kb on + strand, within ABID97_RS25870at 94.944 kb on - strand, within ABID97_RS25870at 95.600 kb on + strand, within ABID97_RS25870at 95.846 kb on + strandat 96.070 kb on - strand, within ABID97_RS25875at 96.390 kb on + strand, within ABID97_RS25875at 96.411 kb on - strand, within ABID97_RS25875

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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93,266 - -0.1
93,266 - +2.7
93,451 + ABID97_RS25865 0.20 +0.3
93,452 - ABID97_RS25865 0.20 +0.3
93,511 + ABID97_RS25865 0.27 +0.1
93,533 - ABID97_RS25865 0.29 -0.3
93,839 + ABID97_RS25865 0.63 +2.1
94,042 + ABID97_RS25865 0.86 -0.1
94,395 - ABID97_RS25870 0.13 +0.1
94,395 - ABID97_RS25870 0.13 +0.1
94,943 + ABID97_RS25870 0.44 +0.9
94,943 + ABID97_RS25870 0.44 +0.5
94,944 - ABID97_RS25870 0.44 +0.3
95,600 + ABID97_RS25870 0.82 +0.1
95,846 + +0.1
96,070 - ABID97_RS25875 0.11 -0.5
96,390 + ABID97_RS25875 0.43 -0.4
96,411 - ABID97_RS25875 0.45 +0.2

Or see this region's nucleotide sequence