Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24780

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24770 and ABID97_RS24775 overlap by 4 nucleotidesABID97_RS24775 and ABID97_RS24780 overlap by 4 nucleotidesABID97_RS24780 and ABID97_RS24785 are separated by 12 nucleotidesABID97_RS24785 and ABID97_RS24790 are separated by 74 nucleotides ABID97_RS24770: ABID97_RS24770 - LacI family DNA-binding transcriptional regulator, at 5,134,652 to 5,135,743 _RS24770 ABID97_RS24775: ABID97_RS24775 - ribokinase, at 5,135,740 to 5,136,708 _RS24775 ABID97_RS24780: ABID97_RS24780 - D-ribose pyranase, at 5,136,705 to 5,137,097 _RS24780 ABID97_RS24785: ABID97_RS24785 - MOSC N-terminal beta barrel domain-containing protein, at 5,137,110 to 5,137,991 _RS24785 ABID97_RS24790: ABID97_RS24790 - FAD-dependent monooxygenase, at 5,138,066 to 5,139,211 _RS24790 Position (kb) 5136 5137 5138Strain fitness (log2 ratio) -3 -2 -1 0 1at 5136.675 kb on + strandat 5136.713 kb on + strandat 5137.124 kb on - strandat 5137.231 kb on + strand, within ABID97_RS24785at 5137.232 kb on - strand, within ABID97_RS24785at 5137.672 kb on + strand, within ABID97_RS24785at 5138.047 kb on + strandat 5138.048 kb on - strandat 5138.048 kb on - strandat 5138.048 kb on - strandat 5138.054 kb on + strandat 5138.054 kb on + strandat 5138.054 kb on + strandat 5138.055 kb on - strandat 5138.055 kb on - strandat 5138.055 kb on - strandat 5138.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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5,136,675 + -3.7
5,136,713 + -0.2
5,137,124 - -0.8
5,137,231 + ABID97_RS24785 0.14 -0.2
5,137,232 - ABID97_RS24785 0.14 +0.5
5,137,672 + ABID97_RS24785 0.64 +0.4
5,138,047 + -1.9
5,138,048 - -0.2
5,138,048 - +0.8
5,138,048 - -0.5
5,138,054 + +0.5
5,138,054 + +1.6
5,138,054 + +0.1
5,138,055 - -0.4
5,138,055 - -0.9
5,138,055 - -0.4
5,138,055 - +0.5

Or see this region's nucleotide sequence