Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22270 and ABID97_RS22275 are separated by 302 nucleotides ABID97_RS22275 and ABID97_RS22280 are separated by 176 nucleotides ABID97_RS22280 and ABID97_RS22285 are separated by 5 nucleotides ABID97_RS22285 and ABID97_RS22290 are separated by 107 nucleotides
ABID97_RS22270: ABID97_RS22270 - aldo/keto reductase, at 4,614,825 to 4,615,682
_RS22270
ABID97_RS22275: ABID97_RS22275 - hypothetical protein, at 4,615,985 to 4,616,209
_RS22275
ABID97_RS22280: ABID97_RS22280 - C4-dicarboxylate transporter DctA, at 4,616,386 to 4,617,720
_RS22280
ABID97_RS22285: ABID97_RS22285 - GntR family transcriptional regulator, at 4,617,726 to 4,618,430
_RS22285
ABID97_RS22290: ABID97_RS22290 - AI-2E family transporter, at 4,618,538 to 4,619,620
_RS22290
Position (kb) 4616
4617
4618 Strain fitness (log2 ratio) -1
0
1 at 4615.987 kb on - strand at 4616.079 kb on + strand, within ABID97_RS22275 at 4616.079 kb on + strand, within ABID97_RS22275 at 4616.080 kb on - strand, within ABID97_RS22275 at 4616.080 kb on - strand, within ABID97_RS22275 at 4616.080 kb on - strand, within ABID97_RS22275 at 4616.144 kb on + strand, within ABID97_RS22275 at 4616.144 kb on + strand, within ABID97_RS22275 at 4616.145 kb on - strand, within ABID97_RS22275 at 4616.145 kb on - strand, within ABID97_RS22275 at 4616.148 kb on + strand, within ABID97_RS22275 at 4616.148 kb on + strand, within ABID97_RS22275 at 4616.149 kb on - strand, within ABID97_RS22275 at 4616.184 kb on - strand, within ABID97_RS22275 at 4616.329 kb on - strand at 4616.620 kb on + strand, within ABID97_RS22280 at 4616.740 kb on + strand, within ABID97_RS22280 at 4617.023 kb on - strand, within ABID97_RS22280 at 4617.313 kb on + strand, within ABID97_RS22280 at 4617.314 kb on - strand, within ABID97_RS22280 at 4617.314 kb on - strand, within ABID97_RS22280 at 4617.925 kb on - strand, within ABID97_RS22285 at 4618.212 kb on + strand, within ABID97_RS22285 at 4618.521 kb on + strand at 4618.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 4,615,987 - +0.2 4,616,079 + ABID97_RS22275 0.42 -1.3 4,616,079 + ABID97_RS22275 0.42 -0.3 4,616,080 - ABID97_RS22275 0.42 +0.2 4,616,080 - ABID97_RS22275 0.42 +0.0 4,616,080 - ABID97_RS22275 0.42 -0.6 4,616,144 + ABID97_RS22275 0.71 -1.2 4,616,144 + ABID97_RS22275 0.71 +0.7 4,616,145 - ABID97_RS22275 0.71 -0.2 4,616,145 - ABID97_RS22275 0.71 +0.4 4,616,148 + ABID97_RS22275 0.72 +1.2 4,616,148 + ABID97_RS22275 0.72 +0.1 4,616,149 - ABID97_RS22275 0.73 -0.6 4,616,184 - ABID97_RS22275 0.88 +0.1 4,616,329 - +0.0 4,616,620 + ABID97_RS22280 0.18 -1.5 4,616,740 + ABID97_RS22280 0.27 -0.9 4,617,023 - ABID97_RS22280 0.48 -0.2 4,617,313 + ABID97_RS22280 0.69 +0.1 4,617,314 - ABID97_RS22280 0.70 +0.3 4,617,314 - ABID97_RS22280 0.70 -1.0 4,617,925 - ABID97_RS22285 0.28 +0.1 4,618,212 + ABID97_RS22285 0.69 +0.1 4,618,521 + -0.8 4,618,537 + -0.5
Or see this region's nucleotide sequence