Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21185 and ABID97_RS21190 overlap by 4 nucleotides ABID97_RS21190 and ABID97_RS21195 are separated by 36 nucleotides ABID97_RS21195 and ABID97_RS21200 are separated by 75 nucleotides ABID97_RS21200 and ABID97_RS21205 are separated by 151 nucleotides
ABID97_RS21185: ABID97_RS21185 - carbohydrate ABC transporter permease, at 4,373,679 to 4,374,530
_RS21185
ABID97_RS21190: ABID97_RS21190 - sugar ABC transporter permease, at 4,374,527 to 4,375,402
_RS21190
ABID97_RS21195: ABID97_RS21195 - ABC transporter substrate-binding protein, at 4,375,439 to 4,376,824
_RS21195
ABID97_RS21200: ABID97_RS21200 - FadR/GntR family transcriptional regulator, at 4,376,900 to 4,377,643
_RS21200
ABID97_RS21205: ABID97_RS21205 - IlvD/Edd family dehydratase, at 4,377,795 to 4,379,531
_RS21205
Position (kb)
4375
4376
4377 Strain fitness (log2 ratio)
-1
0
1 at 4374.555 kb on + strand at 4374.828 kb on + strand, within ABID97_RS21190 at 4374.828 kb on + strand, within ABID97_RS21190 at 4375.525 kb on + strand at 4375.525 kb on + strand at 4375.526 kb on - strand at 4375.710 kb on + strand, within ABID97_RS21195 at 4375.816 kb on - strand, within ABID97_RS21195 at 4376.157 kb on + strand, within ABID97_RS21195 at 4376.292 kb on + strand, within ABID97_RS21195 at 4376.293 kb on - strand, within ABID97_RS21195 at 4376.398 kb on - strand, within ABID97_RS21195 at 4376.398 kb on - strand, within ABID97_RS21195 at 4376.427 kb on + strand, within ABID97_RS21195 at 4376.433 kb on + strand, within ABID97_RS21195 at 4376.544 kb on + strand, within ABID97_RS21195 at 4376.709 kb on + strand at 4376.710 kb on - strand at 4376.710 kb on - strand at 4376.710 kb on - strand at 4376.901 kb on + strand at 4376.901 kb on + strand at 4377.711 kb on + strand at 4377.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 4,374,555 + +0.4 4,374,828 + ABID97_RS21190 0.34 +1.0 4,374,828 + ABID97_RS21190 0.34 -0.4 4,375,525 + -0.4 4,375,525 + +0.7 4,375,526 - -0.1 4,375,710 + ABID97_RS21195 0.20 -0.0 4,375,816 - ABID97_RS21195 0.27 +0.9 4,376,157 + ABID97_RS21195 0.52 -0.2 4,376,292 + ABID97_RS21195 0.62 +0.4 4,376,293 - ABID97_RS21195 0.62 -0.6 4,376,398 - ABID97_RS21195 0.69 -0.2 4,376,398 - ABID97_RS21195 0.69 +0.3 4,376,427 + ABID97_RS21195 0.71 -0.8 4,376,433 + ABID97_RS21195 0.72 +0.1 4,376,544 + ABID97_RS21195 0.80 -0.2 4,376,709 + -1.4 4,376,710 - -0.3 4,376,710 - +0.8 4,376,710 - -0.0 4,376,901 + +0.0 4,376,901 + +0.4 4,377,711 + +0.1 4,377,779 - -1.2
Or see this region's nucleotide sequence