Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21195

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21185 and ABID97_RS21190 overlap by 4 nucleotidesABID97_RS21190 and ABID97_RS21195 are separated by 36 nucleotidesABID97_RS21195 and ABID97_RS21200 are separated by 75 nucleotidesABID97_RS21200 and ABID97_RS21205 are separated by 151 nucleotides ABID97_RS21185: ABID97_RS21185 - carbohydrate ABC transporter permease, at 4,373,679 to 4,374,530 _RS21185 ABID97_RS21190: ABID97_RS21190 - sugar ABC transporter permease, at 4,374,527 to 4,375,402 _RS21190 ABID97_RS21195: ABID97_RS21195 - ABC transporter substrate-binding protein, at 4,375,439 to 4,376,824 _RS21195 ABID97_RS21200: ABID97_RS21200 - FadR/GntR family transcriptional regulator, at 4,376,900 to 4,377,643 _RS21200 ABID97_RS21205: ABID97_RS21205 - IlvD/Edd family dehydratase, at 4,377,795 to 4,379,531 _RS21205 Position (kb) 4375 4376 4377Strain fitness (log2 ratio) -1 0 1at 4374.555 kb on + strandat 4374.828 kb on + strand, within ABID97_RS21190at 4374.828 kb on + strand, within ABID97_RS21190at 4375.525 kb on + strandat 4375.525 kb on + strandat 4375.526 kb on - strandat 4375.710 kb on + strand, within ABID97_RS21195at 4375.816 kb on - strand, within ABID97_RS21195at 4376.157 kb on + strand, within ABID97_RS21195at 4376.292 kb on + strand, within ABID97_RS21195at 4376.293 kb on - strand, within ABID97_RS21195at 4376.398 kb on - strand, within ABID97_RS21195at 4376.398 kb on - strand, within ABID97_RS21195at 4376.427 kb on + strand, within ABID97_RS21195at 4376.433 kb on + strand, within ABID97_RS21195at 4376.544 kb on + strand, within ABID97_RS21195at 4376.709 kb on + strandat 4376.710 kb on - strandat 4376.710 kb on - strandat 4376.710 kb on - strandat 4376.901 kb on + strandat 4376.901 kb on + strandat 4377.711 kb on + strandat 4377.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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4,374,555 + +0.4
4,374,828 + ABID97_RS21190 0.34 +1.0
4,374,828 + ABID97_RS21190 0.34 -0.4
4,375,525 + -0.4
4,375,525 + +0.7
4,375,526 - -0.1
4,375,710 + ABID97_RS21195 0.20 -0.0
4,375,816 - ABID97_RS21195 0.27 +0.9
4,376,157 + ABID97_RS21195 0.52 -0.2
4,376,292 + ABID97_RS21195 0.62 +0.4
4,376,293 - ABID97_RS21195 0.62 -0.6
4,376,398 - ABID97_RS21195 0.69 -0.2
4,376,398 - ABID97_RS21195 0.69 +0.3
4,376,427 + ABID97_RS21195 0.71 -0.8
4,376,433 + ABID97_RS21195 0.72 +0.1
4,376,544 + ABID97_RS21195 0.80 -0.2
4,376,709 + -1.4
4,376,710 - -0.3
4,376,710 - +0.8
4,376,710 - -0.0
4,376,901 + +0.0
4,376,901 + +0.4
4,377,711 + +0.1
4,377,779 - -1.2

Or see this region's nucleotide sequence