Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14070

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14065 and ABID97_RS14070 are separated by 40 nucleotidesABID97_RS14070 and ABID97_RS14075 are separated by 42 nucleotidesABID97_RS14075 and ABID97_RS14080 are separated by 30 nucleotides ABID97_RS14065: ABID97_RS14065 - quinone-dependent dihydroorotate dehydrogenase, at 2,918,388 to 2,919,470 _RS14065 ABID97_RS14070: ABID97_RS14070 - ribose-5-phosphate isomerase RpiA, at 2,919,511 to 2,920,239 _RS14070 ABID97_RS14075: ABID97_RS14075 - glutaredoxin family protein, at 2,920,282 to 2,920,929 _RS14075 ABID97_RS14080: ABID97_RS14080 - M3 family metallopeptidase, at 2,920,960 to 2,923,008 _RS14080 Position (kb) 2919 2920 2921Strain fitness (log2 ratio) -2 -1 0 1at 2919.486 kb on + strandat 2920.478 kb on + strand, within ABID97_RS14075at 2920.479 kb on - strand, within ABID97_RS14075at 2920.677 kb on - strand, within ABID97_RS14075at 2920.677 kb on - strand, within ABID97_RS14075at 2920.718 kb on + strand, within ABID97_RS14075at 2920.719 kb on - strand, within ABID97_RS14075at 2920.917 kb on - strandat 2921.153 kb on + strandat 2921.154 kb on - strandat 2921.186 kb on + strand, within ABID97_RS14080at 2921.186 kb on + strand, within ABID97_RS14080at 2921.186 kb on + strand, within ABID97_RS14080at 2921.186 kb on + strand, within ABID97_RS14080at 2921.186 kb on + strand, within ABID97_RS14080at 2921.187 kb on - strand, within ABID97_RS14080at 2921.187 kb on - strand, within ABID97_RS14080at 2921.187 kb on - strand, within ABID97_RS14080at 2921.192 kb on + strand, within ABID97_RS14080at 2921.192 kb on + strand, within ABID97_RS14080at 2921.193 kb on - strand, within ABID97_RS14080at 2921.193 kb on - strand, within ABID97_RS14080at 2921.235 kb on + strand, within ABID97_RS14080at 2921.235 kb on + strand, within ABID97_RS14080at 2921.236 kb on - strand, within ABID97_RS14080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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2,919,486 + -1.9
2,920,478 + ABID97_RS14075 0.30 -0.9
2,920,479 - ABID97_RS14075 0.30 -1.0
2,920,677 - ABID97_RS14075 0.61 +0.1
2,920,677 - ABID97_RS14075 0.61 +0.7
2,920,718 + ABID97_RS14075 0.67 -0.0
2,920,719 - ABID97_RS14075 0.67 +0.4
2,920,917 - -0.2
2,921,153 + -0.7
2,921,154 - -1.0
2,921,186 + ABID97_RS14080 0.11 -0.0
2,921,186 + ABID97_RS14080 0.11 -0.5
2,921,186 + ABID97_RS14080 0.11 -0.1
2,921,186 + ABID97_RS14080 0.11 -0.6
2,921,186 + ABID97_RS14080 0.11 -0.6
2,921,187 - ABID97_RS14080 0.11 -0.5
2,921,187 - ABID97_RS14080 0.11 +0.1
2,921,187 - ABID97_RS14080 0.11 +0.8
2,921,192 + ABID97_RS14080 0.11 +0.2
2,921,192 + ABID97_RS14080 0.11 -0.3
2,921,193 - ABID97_RS14080 0.11 +0.0
2,921,193 - ABID97_RS14080 0.11 -0.4
2,921,235 + ABID97_RS14080 0.13 -1.5
2,921,235 + ABID97_RS14080 0.13 -0.9
2,921,236 - ABID97_RS14080 0.13 -0.2

Or see this region's nucleotide sequence