Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS14065 and ABID97_RS14070 are separated by 40 nucleotides ABID97_RS14070 and ABID97_RS14075 are separated by 42 nucleotides ABID97_RS14075 and ABID97_RS14080 are separated by 30 nucleotides
ABID97_RS14065: ABID97_RS14065 - quinone-dependent dihydroorotate dehydrogenase, at 2,918,388 to 2,919,470
_RS14065
ABID97_RS14070: ABID97_RS14070 - ribose-5-phosphate isomerase RpiA, at 2,919,511 to 2,920,239
_RS14070
ABID97_RS14075: ABID97_RS14075 - glutaredoxin family protein, at 2,920,282 to 2,920,929
_RS14075
ABID97_RS14080: ABID97_RS14080 - M3 family metallopeptidase, at 2,920,960 to 2,923,008
_RS14080
Position (kb)
2919
2920
2921 Strain fitness (log2 ratio)
-2
-1
0
1 at 2919.486 kb on + strand at 2920.478 kb on + strand, within ABID97_RS14075 at 2920.479 kb on - strand, within ABID97_RS14075 at 2920.677 kb on - strand, within ABID97_RS14075 at 2920.677 kb on - strand, within ABID97_RS14075 at 2920.718 kb on + strand, within ABID97_RS14075 at 2920.719 kb on - strand, within ABID97_RS14075 at 2920.917 kb on - strand at 2921.153 kb on + strand at 2921.154 kb on - strand at 2921.186 kb on + strand, within ABID97_RS14080 at 2921.186 kb on + strand, within ABID97_RS14080 at 2921.186 kb on + strand, within ABID97_RS14080 at 2921.186 kb on + strand, within ABID97_RS14080 at 2921.186 kb on + strand, within ABID97_RS14080 at 2921.187 kb on - strand, within ABID97_RS14080 at 2921.187 kb on - strand, within ABID97_RS14080 at 2921.187 kb on - strand, within ABID97_RS14080 at 2921.192 kb on + strand, within ABID97_RS14080 at 2921.192 kb on + strand, within ABID97_RS14080 at 2921.193 kb on - strand, within ABID97_RS14080 at 2921.193 kb on - strand, within ABID97_RS14080 at 2921.235 kb on + strand, within ABID97_RS14080 at 2921.235 kb on + strand, within ABID97_RS14080 at 2921.236 kb on - strand, within ABID97_RS14080
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 2,919,486 + -1.9 2,920,478 + ABID97_RS14075 0.30 -0.9 2,920,479 - ABID97_RS14075 0.30 -1.0 2,920,677 - ABID97_RS14075 0.61 +0.1 2,920,677 - ABID97_RS14075 0.61 +0.7 2,920,718 + ABID97_RS14075 0.67 -0.0 2,920,719 - ABID97_RS14075 0.67 +0.4 2,920,917 - -0.2 2,921,153 + -0.7 2,921,154 - -1.0 2,921,186 + ABID97_RS14080 0.11 -0.0 2,921,186 + ABID97_RS14080 0.11 -0.5 2,921,186 + ABID97_RS14080 0.11 -0.1 2,921,186 + ABID97_RS14080 0.11 -0.6 2,921,186 + ABID97_RS14080 0.11 -0.6 2,921,187 - ABID97_RS14080 0.11 -0.5 2,921,187 - ABID97_RS14080 0.11 +0.1 2,921,187 - ABID97_RS14080 0.11 +0.8 2,921,192 + ABID97_RS14080 0.11 +0.2 2,921,192 + ABID97_RS14080 0.11 -0.3 2,921,193 - ABID97_RS14080 0.11 +0.0 2,921,193 - ABID97_RS14080 0.11 -0.4 2,921,235 + ABID97_RS14080 0.13 -1.5 2,921,235 + ABID97_RS14080 0.13 -0.9 2,921,236 - ABID97_RS14080 0.13 -0.2
Or see this region's nucleotide sequence