Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12565

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12560 and ABID97_RS12565 are separated by 446 nucleotidesABID97_RS12565 and ABID97_RS12570 are separated by 48 nucleotidesABID97_RS12570 and ABID97_RS12575 are separated by 15 nucleotides ABID97_RS12560: ABID97_RS12560 - hypothetical protein, at 2,607,065 to 2,608,540 _RS12560 ABID97_RS12565: ABID97_RS12565 - beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein, at 2,608,987 to 2,610,036 _RS12565 ABID97_RS12570: ABID97_RS12570 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 2,610,085 to 2,611,002 _RS12570 ABID97_RS12575: ABID97_RS12575 - ATP-grasp domain-containing protein, at 2,611,018 to 2,612,166 _RS12575 Position (kb) 2608 2609 2610 2611Strain fitness (log2 ratio) -1 0 1at 2608.065 kb on + strand, within ABID97_RS12560at 2608.065 kb on + strand, within ABID97_RS12560at 2608.066 kb on - strand, within ABID97_RS12560at 2608.066 kb on - strand, within ABID97_RS12560at 2608.941 kb on + strandat 2610.188 kb on - strand, within ABID97_RS12570at 2610.386 kb on - strand, within ABID97_RS12570at 2610.541 kb on + strand, within ABID97_RS12570at 2610.541 kb on + strand, within ABID97_RS12570

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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2,608,065 + ABID97_RS12560 0.68 -0.5
2,608,065 + ABID97_RS12560 0.68 +0.5
2,608,066 - ABID97_RS12560 0.68 +0.6
2,608,066 - ABID97_RS12560 0.68 -0.1
2,608,941 + +0.6
2,610,188 - ABID97_RS12570 0.11 -0.2
2,610,386 - ABID97_RS12570 0.33 -0.3
2,610,541 + ABID97_RS12570 0.50 +0.5
2,610,541 + ABID97_RS12570 0.50 -0.8

Or see this region's nucleotide sequence