Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04620

Experiment: D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS04610 and ABID97_RS04615 are separated by 20 nucleotidesABID97_RS04615 and ABID97_RS04620 are separated by 10 nucleotidesABID97_RS04620 and ABID97_RS04625 are separated by 117 nucleotides ABID97_RS04610: ABID97_RS04610 - potassium transporter Kup, at 960,662 to 962,533 _RS04610 ABID97_RS04615: ABID97_RS04615 - polysaccharide deacetylase family protein, at 962,554 to 963,477 _RS04615 ABID97_RS04620: ABID97_RS04620 - nuclear transport factor 2 family protein, at 963,488 to 963,925 _RS04620 ABID97_RS04625: ABID97_RS04625 - benzoate/H(+) symporter BenE family transporter, at 964,043 to 965,308 _RS04625 Position (kb) 963 964Strain fitness (log2 ratio) -1 0 1 2at 962.711 kb on + strand, within ABID97_RS04615at 962.711 kb on + strand, within ABID97_RS04615at 962.711 kb on + strand, within ABID97_RS04615at 962.712 kb on - strand, within ABID97_RS04615at 962.712 kb on - strand, within ABID97_RS04615at 962.937 kb on - strand, within ABID97_RS04615at 962.942 kb on + strand, within ABID97_RS04615at 963.176 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.369 kb on - strand, within ABID97_RS04615at 963.402 kb on - strandat 963.428 kb on + strandat 963.429 kb on - strandat 963.579 kb on + strand, within ABID97_RS04620at 963.591 kb on + strand, within ABID97_RS04620at 963.591 kb on + strand, within ABID97_RS04620at 963.592 kb on - strand, within ABID97_RS04620at 963.633 kb on + strand, within ABID97_RS04620at 963.633 kb on + strand, within ABID97_RS04620at 963.634 kb on - strand, within ABID97_RS04620at 963.652 kb on - strand, within ABID97_RS04620at 963.652 kb on - strand, within ABID97_RS04620at 963.723 kb on + strand, within ABID97_RS04620at 963.724 kb on - strand, within ABID97_RS04620at 963.724 kb on - strand, within ABID97_RS04620at 963.724 kb on - strand, within ABID97_RS04620at 963.810 kb on + strand, within ABID97_RS04620at 963.810 kb on + strand, within ABID97_RS04620at 963.811 kb on - strand, within ABID97_RS04620at 964.308 kb on - strand, within ABID97_RS04625at 964.308 kb on - strand, within ABID97_RS04625at 964.308 kb on - strand, within ABID97_RS04625at 964.517 kb on + strand, within ABID97_RS04625at 964.518 kb on - strand, within ABID97_RS04625at 964.518 kb on - strand, within ABID97_RS04625at 964.518 kb on - strand, within ABID97_RS04625at 964.547 kb on + strand, within ABID97_RS04625at 964.760 kb on + strand, within ABID97_RS04625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
remove
962,711 + ABID97_RS04615 0.17 -0.4
962,711 + ABID97_RS04615 0.17 +0.3
962,711 + ABID97_RS04615 0.17 -0.3
962,712 - ABID97_RS04615 0.17 +0.3
962,712 - ABID97_RS04615 0.17 -0.2
962,937 - ABID97_RS04615 0.41 -0.3
962,942 + ABID97_RS04615 0.42 +0.3
963,176 + ABID97_RS04615 0.67 -0.3
963,368 + ABID97_RS04615 0.88 -0.6
963,368 + ABID97_RS04615 0.88 +0.4
963,368 + ABID97_RS04615 0.88 +0.7
963,368 + ABID97_RS04615 0.88 -0.4
963,369 - ABID97_RS04615 0.88 -0.9
963,402 - -0.0
963,428 + +0.5
963,429 - -0.5
963,579 + ABID97_RS04620 0.21 +2.0
963,591 + ABID97_RS04620 0.24 +0.7
963,591 + ABID97_RS04620 0.24 -0.5
963,592 - ABID97_RS04620 0.24 +0.2
963,633 + ABID97_RS04620 0.33 -0.1
963,633 + ABID97_RS04620 0.33 +0.0
963,634 - ABID97_RS04620 0.33 +1.4
963,652 - ABID97_RS04620 0.37 +0.1
963,652 - ABID97_RS04620 0.37 +0.0
963,723 + ABID97_RS04620 0.54 +0.2
963,724 - ABID97_RS04620 0.54 +1.0
963,724 - ABID97_RS04620 0.54 +0.5
963,724 - ABID97_RS04620 0.54 -0.7
963,810 + ABID97_RS04620 0.74 +1.3
963,810 + ABID97_RS04620 0.74 +0.4
963,811 - ABID97_RS04620 0.74 -0.2
964,308 - ABID97_RS04625 0.21 -0.6
964,308 - ABID97_RS04625 0.21 +0.0
964,308 - ABID97_RS04625 0.21 +0.4
964,517 + ABID97_RS04625 0.37 +0.1
964,518 - ABID97_RS04625 0.38 +1.0
964,518 - ABID97_RS04625 0.38 -0.7
964,518 - ABID97_RS04625 0.38 -1.0
964,547 + ABID97_RS04625 0.40 -0.6
964,760 + ABID97_RS04625 0.57 +0.0

Or see this region's nucleotide sequence