Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03870 and ABID97_RS03875 overlap by 4 nucleotides ABID97_RS03875 and ABID97_RS03880 are separated by 5 nucleotides
ABID97_RS03870: ABID97_RS03870 - ABC transporter permease, at 793,753 to 794,814
_RS03870
ABID97_RS03875: ABID97_RS03875 - ABC transporter permease, at 794,811 to 795,734
_RS03875
ABID97_RS03880: ABID97_RS03880 - formamidase, at 795,740 to 796,744
_RS03880
Position (kb) 794
795
796 Strain fitness (log2 ratio) -1
0
1 at 794.188 kb on + strand, within ABID97_RS03870 at 794.189 kb on - strand, within ABID97_RS03870 at 794.189 kb on - strand, within ABID97_RS03870 at 794.189 kb on - strand, within ABID97_RS03870 at 794.266 kb on + strand, within ABID97_RS03870 at 794.267 kb on - strand, within ABID97_RS03870 at 794.567 kb on - strand, within ABID97_RS03870 at 795.142 kb on - strand, within ABID97_RS03875 at 795.450 kb on + strand, within ABID97_RS03875 at 795.643 kb on - strand at 796.115 kb on + strand, within ABID97_RS03880 at 796.116 kb on - strand, within ABID97_RS03880 at 796.119 kb on - strand, within ABID97_RS03880 at 796.119 kb on - strand, within ABID97_RS03880 at 796.265 kb on + strand, within ABID97_RS03880 at 796.265 kb on + strand, within ABID97_RS03880 at 796.266 kb on - strand, within ABID97_RS03880 at 796.266 kb on - strand, within ABID97_RS03880 at 796.556 kb on + strand, within ABID97_RS03880 at 796.557 kb on - strand, within ABID97_RS03880 at 796.566 kb on - strand, within ABID97_RS03880 at 796.614 kb on - strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.619 kb on + strand, within ABID97_RS03880 at 796.620 kb on - strand, within ABID97_RS03880 at 796.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 794,188 + ABID97_RS03870 0.41 -0.2 794,189 - ABID97_RS03870 0.41 +0.0 794,189 - ABID97_RS03870 0.41 +0.8 794,189 - ABID97_RS03870 0.41 -0.8 794,266 + ABID97_RS03870 0.48 -0.1 794,267 - ABID97_RS03870 0.48 -0.1 794,567 - ABID97_RS03870 0.77 -0.1 795,142 - ABID97_RS03875 0.36 -0.5 795,450 + ABID97_RS03875 0.69 -0.4 795,643 - +0.3 796,115 + ABID97_RS03880 0.37 -0.2 796,116 - ABID97_RS03880 0.37 +0.0 796,119 - ABID97_RS03880 0.38 -1.5 796,119 - ABID97_RS03880 0.38 +0.1 796,265 + ABID97_RS03880 0.52 -0.1 796,265 + ABID97_RS03880 0.52 +0.4 796,266 - ABID97_RS03880 0.52 -0.1 796,266 - ABID97_RS03880 0.52 -1.4 796,556 + ABID97_RS03880 0.81 -0.1 796,557 - ABID97_RS03880 0.81 -0.5 796,566 - ABID97_RS03880 0.82 -0.3 796,614 - ABID97_RS03880 0.87 -0.1 796,619 + ABID97_RS03880 0.87 +0.1 796,619 + ABID97_RS03880 0.87 +0.4 796,619 + ABID97_RS03880 0.87 -0.2 796,619 + ABID97_RS03880 0.87 +0.2 796,619 + ABID97_RS03880 0.87 -0.3 796,619 + ABID97_RS03880 0.87 -0.9 796,619 + ABID97_RS03880 0.87 -1.3 796,620 - ABID97_RS03880 0.88 -0.3 796,721 + +0.1
Or see this region's nucleotide sequence