Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01940 and ABID97_RS01945 are separated by 20 nucleotides ABID97_RS01945 and ABID97_RS01950 overlap by 8 nucleotides
ABID97_RS01940: ABID97_RS01940 - D-erythronate dehydrogenase, at 383,496 to 384,512
_RS01940
ABID97_RS01945: ABID97_RS01945 - L-threonate dehydrogenase, at 384,533 to 385,477
_RS01945
ABID97_RS01950: ABID97_RS01950 - MFS transporter, at 385,470 to 386,756
_RS01950
Position (kb) 384
385
386 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.046 kb on + strand, within ABID97_RS01940 at 384.047 kb on - strand, within ABID97_RS01940 at 384.047 kb on - strand, within ABID97_RS01940 at 384.282 kb on - strand, within ABID97_RS01940 at 384.819 kb on + strand, within ABID97_RS01945 at 384.819 kb on + strand, within ABID97_RS01945 at 384.820 kb on - strand, within ABID97_RS01945 at 384.820 kb on - strand, within ABID97_RS01945 at 384.820 kb on - strand, within ABID97_RS01945 at 385.084 kb on - strand, within ABID97_RS01945 at 385.438 kb on + strand at 385.439 kb on - strand at 385.439 kb on - strand at 385.439 kb on - strand at 385.439 kb on - strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.544 kb on - strand at 385.544 kb on - strand at 385.544 kb on - strand at 385.544 kb on - strand at 385.594 kb on + strand at 385.620 kb on - strand, within ABID97_RS01950 at 385.768 kb on + strand, within ABID97_RS01950 at 385.769 kb on - strand, within ABID97_RS01950 at 385.979 kb on - strand, within ABID97_RS01950 at 386.003 kb on - strand, within ABID97_RS01950 at 386.003 kb on - strand, within ABID97_RS01950 at 386.161 kb on + strand, within ABID97_RS01950 at 386.162 kb on - strand, within ABID97_RS01950 at 386.162 kb on - strand, within ABID97_RS01950 at 386.368 kb on + strand, within ABID97_RS01950 at 386.369 kb on - strand, within ABID97_RS01950 at 386.369 kb on - strand, within ABID97_RS01950 at 386.387 kb on - strand, within ABID97_RS01950 at 386.428 kb on + strand, within ABID97_RS01950 at 386.429 kb on - strand, within ABID97_RS01950 at 386.429 kb on - strand, within ABID97_RS01950 at 386.429 kb on - strand, within ABID97_RS01950
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 384,046 + ABID97_RS01940 0.54 -1.1 384,047 - ABID97_RS01940 0.54 -1.3 384,047 - ABID97_RS01940 0.54 -0.7 384,282 - ABID97_RS01940 0.77 -2.3 384,819 + ABID97_RS01945 0.30 +0.1 384,819 + ABID97_RS01945 0.30 +0.1 384,820 - ABID97_RS01945 0.30 +0.8 384,820 - ABID97_RS01945 0.30 +1.2 384,820 - ABID97_RS01945 0.30 +1.5 385,084 - ABID97_RS01945 0.58 +0.5 385,438 + -0.3 385,439 - +0.5 385,439 - +1.5 385,439 - +0.3 385,439 - +1.9 385,543 + +0.8 385,543 + +0.6 385,543 + +1.2 385,543 + +0.4 385,543 + +0.8 385,544 - +1.2 385,544 - +1.4 385,544 - +0.9 385,544 - +0.7 385,594 + +2.3 385,620 - ABID97_RS01950 0.12 +1.2 385,768 + ABID97_RS01950 0.23 +0.5 385,769 - ABID97_RS01950 0.23 +0.5 385,979 - ABID97_RS01950 0.40 -0.1 386,003 - ABID97_RS01950 0.41 +1.1 386,003 - ABID97_RS01950 0.41 +0.3 386,161 + ABID97_RS01950 0.54 -0.4 386,162 - ABID97_RS01950 0.54 -0.5 386,162 - ABID97_RS01950 0.54 +0.3 386,368 + ABID97_RS01950 0.70 -0.6 386,369 - ABID97_RS01950 0.70 -0.4 386,369 - ABID97_RS01950 0.70 +0.0 386,387 - ABID97_RS01950 0.71 +1.0 386,428 + ABID97_RS01950 0.74 -2.5 386,429 - ABID97_RS01950 0.75 +1.0 386,429 - ABID97_RS01950 0.75 +0.6 386,429 - ABID97_RS01950 0.75 +0.4
Or see this region's nucleotide sequence