Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_82

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_81 and PfGW456L13_82 are separated by 163 nucleotidesPfGW456L13_82 and PfGW456L13_83 overlap by 1 nucleotides PfGW456L13_81 - Urea ABC transporter, substrate binding protein UrtA, at 92,462 to 93,727 _81 PfGW456L13_82 - Urea ABC transporter, permease protein UrtB, at 93,891 to 95,393 _82 PfGW456L13_83 - Urea ABC transporter, permease protein UrtC, at 95,393 to 96,472 _83 Position (kb) 93 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 92.930 kb on + strand, within PfGW456L13_81at 92.930 kb on + strand, within PfGW456L13_81at 92.931 kb on - strand, within PfGW456L13_81at 92.966 kb on + strand, within PfGW456L13_81at 92.967 kb on - strand, within PfGW456L13_81at 92.967 kb on - strand, within PfGW456L13_81at 92.967 kb on - strand, within PfGW456L13_81at 92.987 kb on + strand, within PfGW456L13_81at 92.987 kb on + strand, within PfGW456L13_81at 92.987 kb on + strand, within PfGW456L13_81at 92.987 kb on + strand, within PfGW456L13_81at 92.988 kb on - strand, within PfGW456L13_81at 92.988 kb on - strand, within PfGW456L13_81at 92.988 kb on - strandat 92.988 kb on - strand, within PfGW456L13_81at 93.071 kb on + strand, within PfGW456L13_81at 93.072 kb on - strand, within PfGW456L13_81at 93.072 kb on - strand, within PfGW456L13_81at 93.072 kb on - strand, within PfGW456L13_81at 93.072 kb on - strand, within PfGW456L13_81at 93.072 kb on - strand, within PfGW456L13_81at 93.072 kb on - strand, within PfGW456L13_81at 93.072 kb on - strand, within PfGW456L13_81at 93.188 kb on + strand, within PfGW456L13_81at 93.188 kb on + strand, within PfGW456L13_81at 93.188 kb on + strand, within PfGW456L13_81at 93.189 kb on - strand, within PfGW456L13_81at 93.189 kb on - strand, within PfGW456L13_81at 93.189 kb on - strand, within PfGW456L13_81at 93.189 kb on - strand, within PfGW456L13_81at 93.264 kb on + strand, within PfGW456L13_81at 93.264 kb on + strand, within PfGW456L13_81at 93.264 kb on + strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.265 kb on - strand, within PfGW456L13_81at 93.314 kb on + strand, within PfGW456L13_81at 93.314 kb on + strand, within PfGW456L13_81at 93.314 kb on + strand, within PfGW456L13_81at 93.314 kb on + strand, within PfGW456L13_81at 93.315 kb on - strand, within PfGW456L13_81at 93.315 kb on - strand, within PfGW456L13_81at 93.315 kb on - strand, within PfGW456L13_81at 93.315 kb on - strand, within PfGW456L13_81at 93.315 kb on - strand, within PfGW456L13_81at 93.371 kb on + strand, within PfGW456L13_81at 93.371 kb on + strand, within PfGW456L13_81at 93.372 kb on - strand, within PfGW456L13_81at 93.437 kb on + strand, within PfGW456L13_81at 93.437 kb on + strand, within PfGW456L13_81at 93.437 kb on + strand, within PfGW456L13_81at 93.437 kb on + strand, within PfGW456L13_81at 93.437 kb on + strand, within PfGW456L13_81at 93.438 kb on - strand, within PfGW456L13_81at 93.438 kb on - strand, within PfGW456L13_81at 93.438 kb on - strand, within PfGW456L13_81at 93.438 kb on - strand, within PfGW456L13_81at 93.438 kb on - strand, within PfGW456L13_81at 93.438 kb on - strand, within PfGW456L13_81at 93.438 kb on - strand, within PfGW456L13_81at 93.545 kb on + strand, within PfGW456L13_81at 93.707 kb on + strandat 93.725 kb on + strandat 93.725 kb on + strandat 93.725 kb on + strandat 93.726 kb on - strandat 93.726 kb on - strandat 93.726 kb on - strandat 93.726 kb on - strandat 93.726 kb on - strandat 93.890 kb on + strandat 93.891 kb on - strandat 94.162 kb on + strand, within PfGW456L13_82at 94.163 kb on - strand, within PfGW456L13_82at 94.207 kb on + strand, within PfGW456L13_82at 94.207 kb on + strand, within PfGW456L13_82at 94.207 kb on + strand, within PfGW456L13_82at 94.442 kb on - strand, within PfGW456L13_82at 94.442 kb on - strand, within PfGW456L13_82at 94.641 kb on + strand, within PfGW456L13_82at 94.641 kb on + strand, within PfGW456L13_82at 94.641 kb on + strand, within PfGW456L13_82at 94.641 kb on + strand, within PfGW456L13_82at 94.641 kb on + strand, within PfGW456L13_82at 94.642 kb on - strand, within PfGW456L13_82at 94.642 kb on - strand, within PfGW456L13_82at 94.642 kb on - strand, within PfGW456L13_82at 94.642 kb on - strand, within PfGW456L13_82at 94.693 kb on - strand, within PfGW456L13_82at 94.693 kb on - strand, within PfGW456L13_82at 94.693 kb on - strand, within PfGW456L13_82at 94.933 kb on - strand, within PfGW456L13_82at 95.178 kb on + strand, within PfGW456L13_82at 95.178 kb on + strand, within PfGW456L13_82at 95.178 kb on + strand, within PfGW456L13_82at 95.178 kb on + strand, within PfGW456L13_82at 95.179 kb on - strand, within PfGW456L13_82at 95.179 kb on - strand, within PfGW456L13_82at 95.179 kb on - strand, within PfGW456L13_82at 95.179 kb on - strand, within PfGW456L13_82at 95.179 kb on - strand, within PfGW456L13_82at 95.476 kb on - strandat 95.476 kb on - strandat 95.476 kb on - strandat 95.537 kb on + strand, within PfGW456L13_83at 95.538 kb on - strand, within PfGW456L13_83at 95.538 kb on - strand, within PfGW456L13_83at 95.538 kb on - strand, within PfGW456L13_83at 95.539 kb on + strand, within PfGW456L13_83at 95.540 kb on - strand, within PfGW456L13_83at 95.540 kb on - strand, within PfGW456L13_83at 95.540 kb on - strand, within PfGW456L13_83at 95.570 kb on + strand, within PfGW456L13_83at 95.571 kb on - strand, within PfGW456L13_83at 95.660 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.675 kb on + strand, within PfGW456L13_83at 95.676 kb on - strand, within PfGW456L13_83at 95.676 kb on - strand, within PfGW456L13_83at 95.676 kb on - strandat 95.676 kb on - strand, within PfGW456L13_83at 95.864 kb on + strand, within PfGW456L13_83at 95.865 kb on - strand, within PfGW456L13_83at 96.209 kb on + strand, within PfGW456L13_83at 96.209 kb on + strand, within PfGW456L13_83at 96.209 kb on + strand, within PfGW456L13_83at 96.210 kb on - strand, within PfGW456L13_83at 96.210 kb on - strand, within PfGW456L13_83at 96.210 kb on - strand, within PfGW456L13_83at 96.262 kb on + strand, within PfGW456L13_83at 96.378 kb on - strandat 96.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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92,930 + PfGW456L13_81 0.37 +1.2
92,930 + PfGW456L13_81 0.37 +1.0
92,931 - PfGW456L13_81 0.37 -1.3
92,966 + PfGW456L13_81 0.40 +1.9
92,967 - PfGW456L13_81 0.40 -0.6
92,967 - PfGW456L13_81 0.40 -0.4
92,967 - PfGW456L13_81 0.40 -0.4
92,987 + PfGW456L13_81 0.41 -0.8
92,987 + PfGW456L13_81 0.41 -0.3
92,987 + PfGW456L13_81 0.41 -1.0
92,987 + PfGW456L13_81 0.41 +1.6
92,988 - PfGW456L13_81 0.42 -0.9
92,988 - PfGW456L13_81 0.42 -0.6
92,988 - +2.1
92,988 - PfGW456L13_81 0.42 +1.1
93,071 + PfGW456L13_81 0.48 -1.1
93,072 - PfGW456L13_81 0.48 +1.1
93,072 - PfGW456L13_81 0.48 +0.8
93,072 - PfGW456L13_81 0.48 -1.9
93,072 - PfGW456L13_81 0.48 -1.9
93,072 - PfGW456L13_81 0.48 +0.7
93,072 - PfGW456L13_81 0.48 +0.8
93,072 - PfGW456L13_81 0.48 +0.4
93,188 + PfGW456L13_81 0.57 +0.1
93,188 + PfGW456L13_81 0.57 +0.3
93,188 + PfGW456L13_81 0.57 +2.5
93,189 - PfGW456L13_81 0.57 -1.5
93,189 - PfGW456L13_81 0.57 -2.4
93,189 - PfGW456L13_81 0.57 +0.6
93,189 - PfGW456L13_81 0.57 -0.3
93,264 + PfGW456L13_81 0.63 -0.6
93,264 + PfGW456L13_81 0.63 -0.2
93,264 + PfGW456L13_81 0.63 +0.4
93,265 - PfGW456L13_81 0.63 -0.5
93,265 - PfGW456L13_81 0.63 -0.4
93,265 - PfGW456L13_81 0.63 +0.9
93,265 - PfGW456L13_81 0.63 -0.7
93,265 - PfGW456L13_81 0.63 -0.9
93,265 - PfGW456L13_81 0.63 +0.2
93,265 - PfGW456L13_81 0.63 -0.5
93,265 - PfGW456L13_81 0.63 +1.0
93,314 + PfGW456L13_81 0.67 -1.0
93,314 + PfGW456L13_81 0.67 +0.7
93,314 + PfGW456L13_81 0.67 -0.7
93,314 + PfGW456L13_81 0.67 +0.1
93,315 - PfGW456L13_81 0.67 +1.3
93,315 - PfGW456L13_81 0.67 -0.7
93,315 - PfGW456L13_81 0.67 -0.3
93,315 - PfGW456L13_81 0.67 +1.1
93,315 - PfGW456L13_81 0.67 -0.1
93,371 + PfGW456L13_81 0.72 -0.8
93,371 + PfGW456L13_81 0.72 +0.2
93,372 - PfGW456L13_81 0.72 +0.2
93,437 + PfGW456L13_81 0.77 -0.3
93,437 + PfGW456L13_81 0.77 +1.3
93,437 + PfGW456L13_81 0.77 +0.5
93,437 + PfGW456L13_81 0.77 -1.4
93,437 + PfGW456L13_81 0.77 +0.2
93,438 - PfGW456L13_81 0.77 -1.5
93,438 - PfGW456L13_81 0.77 -1.6
93,438 - PfGW456L13_81 0.77 -0.6
93,438 - PfGW456L13_81 0.77 -2.3
93,438 - PfGW456L13_81 0.77 -0.8
93,438 - PfGW456L13_81 0.77 +0.7
93,438 - PfGW456L13_81 0.77 -0.8
93,545 + PfGW456L13_81 0.86 -1.2
93,707 + -1.3
93,725 + +0.1
93,725 + +0.5
93,725 + -1.5
93,726 - -0.5
93,726 - -0.6
93,726 - -1.6
93,726 - +1.3
93,726 - -0.4
93,890 + +0.2
93,891 - +1.1
94,162 + PfGW456L13_82 0.18 +0.8
94,163 - PfGW456L13_82 0.18 +0.2
94,207 + PfGW456L13_82 0.21 -0.4
94,207 + PfGW456L13_82 0.21 +0.2
94,207 + PfGW456L13_82 0.21 +1.1
94,442 - PfGW456L13_82 0.37 -0.0
94,442 - PfGW456L13_82 0.37 -0.5
94,641 + PfGW456L13_82 0.50 +1.5
94,641 + PfGW456L13_82 0.50 +0.5
94,641 + PfGW456L13_82 0.50 +1.0
94,641 + PfGW456L13_82 0.50 +0.5
94,641 + PfGW456L13_82 0.50 +1.1
94,642 - PfGW456L13_82 0.50 +0.4
94,642 - PfGW456L13_82 0.50 -0.2
94,642 - PfGW456L13_82 0.50 +0.2
94,642 - PfGW456L13_82 0.50 -1.2
94,693 - PfGW456L13_82 0.53 +1.1
94,693 - PfGW456L13_82 0.53 +0.9
94,693 - PfGW456L13_82 0.53 +0.2
94,933 - PfGW456L13_82 0.69 +0.2
95,178 + PfGW456L13_82 0.86 -0.9
95,178 + PfGW456L13_82 0.86 +1.4
95,178 + PfGW456L13_82 0.86 -0.9
95,178 + PfGW456L13_82 0.86 -0.4
95,179 - PfGW456L13_82 0.86 -1.3
95,179 - PfGW456L13_82 0.86 +0.7
95,179 - PfGW456L13_82 0.86 +1.9
95,179 - PfGW456L13_82 0.86 +0.7
95,179 - PfGW456L13_82 0.86 -0.8
95,476 - +1.0
95,476 - +0.4
95,476 - -0.3
95,537 + PfGW456L13_83 0.13 -1.1
95,538 - PfGW456L13_83 0.13 +0.2
95,538 - PfGW456L13_83 0.13 +0.6
95,538 - PfGW456L13_83 0.13 +0.4
95,539 + PfGW456L13_83 0.14 -2.3
95,540 - PfGW456L13_83 0.14 +0.3
95,540 - PfGW456L13_83 0.14 +0.8
95,540 - PfGW456L13_83 0.14 -0.3
95,570 + PfGW456L13_83 0.16 -0.9
95,571 - PfGW456L13_83 0.16 -1.5
95,660 + PfGW456L13_83 0.25 -0.8
95,675 + PfGW456L13_83 0.26 -0.6
95,675 + PfGW456L13_83 0.26 -1.6
95,675 + PfGW456L13_83 0.26 -1.2
95,675 + PfGW456L13_83 0.26 -0.9
95,675 + PfGW456L13_83 0.26 -0.5
95,675 + PfGW456L13_83 0.26 -0.1
95,675 + PfGW456L13_83 0.26 +0.2
95,675 + PfGW456L13_83 0.26 -0.9
95,675 + PfGW456L13_83 0.26 -1.9
95,676 - PfGW456L13_83 0.26 -1.1
95,676 - PfGW456L13_83 0.26 -0.6
95,676 - +0.7
95,676 - PfGW456L13_83 0.26 -0.9
95,864 + PfGW456L13_83 0.44 +0.2
95,865 - PfGW456L13_83 0.44 +0.0
96,209 + PfGW456L13_83 0.76 -1.2
96,209 + PfGW456L13_83 0.76 -0.1
96,209 + PfGW456L13_83 0.76 +0.5
96,210 - PfGW456L13_83 0.76 -1.3
96,210 - PfGW456L13_83 0.76 +1.5
96,210 - PfGW456L13_83 0.76 +0.3
96,262 + PfGW456L13_83 0.80 +0.9
96,378 - +0.9
96,378 - -0.2

Or see this region's nucleotide sequence