Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_769 and PfGW456L13_770 are separated by 551 nucleotides PfGW456L13_770 and PfGW456L13_771 are separated by 140 nucleotides
PfGW456L13_769 - DNA-binding protein HU-alpha, at 873,130 to 873,405
_769
PfGW456L13_770 - Superfamily II DNA and RNA helicases, at 873,957 to 874,328
_770
PfGW456L13_771 - Predicted signal transduction protein, at 874,469 to 875,872
_771
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 873.044 kb on + strand at 873.044 kb on + strand at 873.044 kb on + strand at 873.044 kb on + strand at 873.045 kb on - strand at 873.077 kb on + strand at 873.078 kb on - strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.095 kb on + strand at 873.096 kb on - strand at 873.096 kb on - strand at 873.096 kb on - strand at 873.096 kb on - strand at 873.135 kb on + strand at 873.135 kb on + strand at 873.135 kb on + strand at 873.135 kb on + strand at 873.136 kb on - strand at 873.274 kb on - strand, within PfGW456L13_769 at 873.396 kb on + strand at 873.404 kb on - strand at 873.569 kb on + strand at 873.570 kb on - strand at 873.570 kb on - strand at 873.614 kb on + strand at 873.635 kb on + strand at 873.635 kb on + strand at 873.635 kb on + strand at 873.635 kb on + strand at 873.635 kb on + strand at 873.635 kb on + strand at 873.635 kb on + strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.636 kb on - strand at 873.766 kb on + strand at 873.789 kb on + strand at 873.790 kb on - strand at 873.790 kb on - strand at 873.828 kb on + strand at 873.891 kb on - strand at 874.001 kb on + strand, within PfGW456L13_770 at 874.169 kb on + strand, within PfGW456L13_770 at 874.182 kb on + strand, within PfGW456L13_770 at 874.305 kb on + strand at 874.305 kb on + strand at 874.305 kb on + strand at 874.305 kb on + strand at 874.305 kb on + strand at 874.305 kb on + strand at 874.305 kb on + strand at 874.306 kb on - strand at 874.306 kb on - strand at 874.306 kb on - strand at 874.326 kb on + strand at 874.326 kb on + strand at 874.326 kb on + strand at 874.327 kb on - strand at 874.327 kb on - strand at 874.327 kb on - strand at 874.327 kb on - strand at 874.420 kb on + strand at 874.420 kb on + strand at 874.420 kb on + strand at 874.421 kb on - strand at 874.533 kb on - strand at 874.618 kb on + strand, within PfGW456L13_771 at 874.671 kb on + strand, within PfGW456L13_771 at 874.683 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.800 kb on + strand, within PfGW456L13_771 at 874.801 kb on - strand, within PfGW456L13_771 at 874.801 kb on - strand, within PfGW456L13_771 at 874.801 kb on - strand, within PfGW456L13_771 at 874.801 kb on - strand, within PfGW456L13_771 at 874.801 kb on - strand, within PfGW456L13_771 at 874.915 kb on - strand, within PfGW456L13_771 at 874.915 kb on - strand, within PfGW456L13_771 at 874.986 kb on + strand, within PfGW456L13_771 at 874.986 kb on + strand, within PfGW456L13_771 at 874.986 kb on + strand, within PfGW456L13_771 at 874.986 kb on + strand, within PfGW456L13_771 at 874.987 kb on - strand, within PfGW456L13_771 at 874.987 kb on - strand, within PfGW456L13_771 at 875.005 kb on - strand, within PfGW456L13_771 at 875.148 kb on + strand, within PfGW456L13_771 at 875.148 kb on + strand, within PfGW456L13_771 at 875.148 kb on + strand, within PfGW456L13_771 at 875.149 kb on - strand, within PfGW456L13_771 at 875.152 kb on - strand, within PfGW456L13_771 at 875.320 kb on + strand, within PfGW456L13_771
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 873,044 + +0.4 873,044 + +0.9 873,044 + -2.0 873,044 + +0.7 873,045 - +1.8 873,077 + -0.1 873,078 - +0.3 873,095 + +2.1 873,095 + -0.9 873,095 + -1.2 873,095 + -0.5 873,095 + +1.5 873,095 + -1.3 873,095 + +0.7 873,095 + +1.3 873,095 + -1.9 873,095 + +1.1 873,095 + -2.0 873,095 + +0.4 873,095 + +0.1 873,095 + -0.9 873,096 - -0.2 873,096 - +1.8 873,096 - -0.9 873,096 - -0.7 873,135 + -0.1 873,135 + +0.7 873,135 + -1.8 873,135 + -1.2 873,136 - -0.1 873,274 - PfGW456L13_769 0.52 +0.9 873,396 + +0.5 873,404 - -0.9 873,569 + -0.3 873,570 - -2.1 873,570 - +0.4 873,614 + -0.4 873,635 + -0.2 873,635 + -0.3 873,635 + +0.4 873,635 + -0.2 873,635 + -0.0 873,635 + +0.3 873,635 + -0.0 873,636 - +0.5 873,636 - -0.6 873,636 - +1.5 873,636 - -1.3 873,636 - -0.3 873,636 - -2.0 873,636 - +0.8 873,636 - -0.6 873,636 - +1.2 873,766 + -0.2 873,789 + +1.8 873,790 - +0.3 873,790 - +0.3 873,828 + -1.7 873,891 - -0.7 874,001 + PfGW456L13_770 0.12 -1.7 874,169 + PfGW456L13_770 0.57 -1.3 874,182 + PfGW456L13_770 0.60 +2.0 874,305 + -2.0 874,305 + +1.5 874,305 + -2.1 874,305 + +0.1 874,305 + -0.0 874,305 + -1.0 874,305 + -0.6 874,306 - +1.3 874,306 - -0.4 874,306 - -0.8 874,326 + -0.2 874,326 + +1.0 874,326 + +0.3 874,327 - +0.4 874,327 - -0.9 874,327 - +0.8 874,327 - +1.4 874,420 + -0.5 874,420 + -0.8 874,420 + -0.4 874,421 - +0.1 874,533 - -2.1 874,618 + PfGW456L13_771 0.11 -0.9 874,671 + PfGW456L13_771 0.14 -0.8 874,683 + PfGW456L13_771 0.15 -2.2 874,800 + PfGW456L13_771 0.24 -1.3 874,800 + PfGW456L13_771 0.24 -1.7 874,800 + PfGW456L13_771 0.24 +1.2 874,800 + PfGW456L13_771 0.24 -2.2 874,800 + PfGW456L13_771 0.24 +1.6 874,800 + PfGW456L13_771 0.24 -2.0 874,800 + PfGW456L13_771 0.24 -1.3 874,800 + PfGW456L13_771 0.24 -1.0 874,801 - PfGW456L13_771 0.24 +0.7 874,801 - PfGW456L13_771 0.24 -0.5 874,801 - PfGW456L13_771 0.24 +0.5 874,801 - PfGW456L13_771 0.24 -2.2 874,801 - PfGW456L13_771 0.24 -1.9 874,915 - PfGW456L13_771 0.32 -0.7 874,915 - PfGW456L13_771 0.32 +0.3 874,986 + PfGW456L13_771 0.37 -2.3 874,986 + PfGW456L13_771 0.37 +0.0 874,986 + PfGW456L13_771 0.37 +0.9 874,986 + PfGW456L13_771 0.37 +0.1 874,987 - PfGW456L13_771 0.37 +0.7 874,987 - PfGW456L13_771 0.37 +0.4 875,005 - PfGW456L13_771 0.38 +1.0 875,148 + PfGW456L13_771 0.48 -0.0 875,148 + PfGW456L13_771 0.48 -0.6 875,148 + PfGW456L13_771 0.48 +0.1 875,149 - PfGW456L13_771 0.48 -0.6 875,152 - PfGW456L13_771 0.49 -1.3 875,320 + PfGW456L13_771 0.61 -1.3
Or see this region's nucleotide sequence