Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_696 and PfGW456L13_697 are separated by 145 nucleotides PfGW456L13_697 and PfGW456L13_698 are separated by 112 nucleotides PfGW456L13_698 and PfGW456L13_699 are separated by 187 nucleotides
PfGW456L13_696 - L-lysine permease, at 792,214 to 792,843
_696
PfGW456L13_697 - Transcriptional regulator, AsnC family, at 792,989 to 793,462
_697
PfGW456L13_698 - Dihydrolipoamide dehydrogenase (EC 1.8.1.4), at 793,575 to 794,975
_698
PfGW456L13_699 - Membrane protease subunits, stomatin/prohibitin homologs, at 795,163 to 797,148
_699
Position (kb) 793
794
795 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 792.625 kb on + strand, within PfGW456L13_696 at 792.708 kb on + strand, within PfGW456L13_696 at 792.800 kb on + strand at 792.800 kb on + strand at 792.800 kb on + strand at 792.800 kb on + strand at 792.801 kb on - strand at 792.801 kb on - strand at 792.801 kb on - strand at 792.936 kb on - strand at 792.943 kb on + strand at 792.955 kb on + strand at 792.956 kb on - strand at 793.143 kb on - strand, within PfGW456L13_697 at 793.216 kb on + strand, within PfGW456L13_697 at 793.216 kb on + strand, within PfGW456L13_697 at 793.216 kb on + strand, within PfGW456L13_697 at 793.216 kb on + strand, within PfGW456L13_697 at 793.217 kb on - strand, within PfGW456L13_697 at 793.317 kb on + strand, within PfGW456L13_697 at 793.318 kb on - strand, within PfGW456L13_697 at 793.318 kb on - strand, within PfGW456L13_697 at 793.340 kb on + strand, within PfGW456L13_697 at 793.340 kb on + strand, within PfGW456L13_697 at 793.341 kb on - strand, within PfGW456L13_697 at 793.414 kb on + strand, within PfGW456L13_697 at 793.414 kb on + strand, within PfGW456L13_697 at 793.414 kb on + strand, within PfGW456L13_697 at 793.415 kb on - strand at 793.415 kb on - strand at 793.415 kb on - strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.461 kb on - strand at 793.504 kb on + strand at 793.504 kb on + strand at 793.504 kb on + strand at 793.505 kb on - strand at 793.505 kb on - strand at 793.505 kb on - strand at 793.505 kb on - strand at 793.505 kb on - strand at 793.547 kb on + strand at 793.548 kb on - strand at 793.548 kb on - strand at 793.576 kb on + strand at 793.576 kb on + strand at 793.576 kb on + strand at 793.576 kb on + strand at 793.577 kb on - strand at 793.577 kb on - strand at 793.577 kb on - strand at 793.577 kb on - strand at 793.577 kb on - strand at 793.856 kb on - strand, within PfGW456L13_698 at 793.856 kb on - strand, within PfGW456L13_698 at 793.856 kb on - strand, within PfGW456L13_698 at 793.856 kb on - strand, within PfGW456L13_698 at 793.856 kb on - strand, within PfGW456L13_698 at 793.856 kb on - strand, within PfGW456L13_698 at 793.922 kb on - strand, within PfGW456L13_698 at 793.922 kb on - strand, within PfGW456L13_698 at 793.945 kb on + strand, within PfGW456L13_698 at 793.945 kb on + strand, within PfGW456L13_698 at 793.945 kb on + strand, within PfGW456L13_698 at 793.945 kb on + strand, within PfGW456L13_698 at 793.945 kb on + strand, within PfGW456L13_698 at 793.945 kb on + strand, within PfGW456L13_698 at 793.946 kb on - strand, within PfGW456L13_698 at 793.946 kb on - strand, within PfGW456L13_698 at 793.946 kb on - strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.144 kb on + strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.145 kb on - strand, within PfGW456L13_698 at 794.146 kb on + strand, within PfGW456L13_698 at 794.146 kb on + strand, within PfGW456L13_698 at 794.146 kb on + strand, within PfGW456L13_698 at 794.146 kb on + strand, within PfGW456L13_698 at 794.147 kb on - strand, within PfGW456L13_698 at 794.172 kb on + strand, within PfGW456L13_698 at 794.172 kb on + strand, within PfGW456L13_698 at 794.172 kb on + strand, within PfGW456L13_698 at 794.172 kb on + strand, within PfGW456L13_698 at 794.173 kb on - strand, within PfGW456L13_698 at 794.173 kb on - strand, within PfGW456L13_698 at 794.173 kb on - strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.176 kb on + strand, within PfGW456L13_698 at 794.177 kb on - strand, within PfGW456L13_698 at 794.442 kb on + strand, within PfGW456L13_698 at 794.442 kb on + strand, within PfGW456L13_698 at 794.509 kb on - strand, within PfGW456L13_698 at 794.531 kb on + strand, within PfGW456L13_698 at 794.531 kb on + strand, within PfGW456L13_698 at 794.532 kb on - strand, within PfGW456L13_698 at 794.532 kb on - strand, within PfGW456L13_698 at 794.532 kb on - strand, within PfGW456L13_698 at 794.663 kb on + strand, within PfGW456L13_698 at 794.797 kb on + strand, within PfGW456L13_698 at 794.798 kb on - strand, within PfGW456L13_698 at 794.798 kb on - strand, within PfGW456L13_698 at 794.798 kb on - strand, within PfGW456L13_698 at 794.798 kb on - strand, within PfGW456L13_698 at 794.929 kb on + strand at 794.930 kb on - strand at 794.930 kb on - strand at 794.952 kb on + strand at 794.953 kb on - strand at 794.965 kb on + strand at 794.965 kb on + strand at 794.965 kb on + strand at 794.965 kb on + strand at 794.965 kb on + strand at 794.965 kb on + strand at 794.965 kb on + strand at 794.965 kb on + strand at 794.966 kb on - strand at 794.966 kb on - strand at 794.966 kb on - strand at 794.966 kb on - strand at 794.966 kb on - strand at 794.966 kb on - strand at 794.966 kb on - strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.981 kb on + strand at 794.982 kb on - strand at 794.982 kb on - strand at 794.982 kb on - strand at 794.982 kb on - strand at 794.982 kb on - strand at 794.982 kb on - strand at 794.982 kb on - strand at 794.982 kb on - strand at 795.011 kb on + strand at 795.011 kb on + strand at 795.011 kb on + strand at 795.017 kb on + strand at 795.017 kb on + strand at 795.017 kb on + strand at 795.017 kb on + strand at 795.017 kb on + strand at 795.018 kb on - strand at 795.018 kb on - strand at 795.042 kb on + strand at 795.043 kb on - strand at 795.045 kb on + strand at 795.104 kb on + strand at 795.104 kb on + strand at 795.104 kb on + strand at 795.104 kb on + strand at 795.104 kb on + strand at 795.105 kb on - strand at 795.105 kb on - strand at 795.105 kb on - strand at 795.105 kb on - strand at 795.105 kb on - strand at 795.105 kb on - strand at 795.105 kb on - strand at 795.189 kb on + strand at 795.189 kb on + strand at 795.189 kb on + strand at 795.189 kb on + strand at 795.190 kb on - strand at 795.190 kb on - strand at 795.190 kb on - strand at 795.311 kb on + strand at 795.311 kb on + strand at 795.311 kb on + strand at 795.311 kb on + strand at 795.312 kb on - strand at 795.312 kb on - strand at 795.312 kb on - strand at 795.514 kb on + strand, within PfGW456L13_699 at 795.514 kb on + strand, within PfGW456L13_699 at 795.514 kb on + strand, within PfGW456L13_699 at 795.514 kb on + strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.515 kb on - strand, within PfGW456L13_699 at 795.560 kb on + strand, within PfGW456L13_699 at 795.774 kb on + strand, within PfGW456L13_699
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 792,625 + PfGW456L13_696 0.65 +2.1 792,708 + PfGW456L13_696 0.78 +1.0 792,800 + -2.0 792,800 + -1.0 792,800 + -1.4 792,800 + +0.3 792,801 - -0.0 792,801 - -1.7 792,801 - -0.1 792,936 - +1.2 792,943 + -1.4 792,955 + +1.5 792,956 - +0.6 793,143 - PfGW456L13_697 0.32 +0.3 793,216 + PfGW456L13_697 0.48 +0.3 793,216 + PfGW456L13_697 0.48 +1.7 793,216 + PfGW456L13_697 0.48 -0.8 793,216 + PfGW456L13_697 0.48 +1.4 793,217 - PfGW456L13_697 0.48 +0.5 793,317 + PfGW456L13_697 0.69 -1.1 793,318 - PfGW456L13_697 0.69 +0.6 793,318 - PfGW456L13_697 0.69 +0.4 793,340 + PfGW456L13_697 0.74 +0.7 793,340 + PfGW456L13_697 0.74 +0.4 793,341 - PfGW456L13_697 0.74 -0.0 793,414 + PfGW456L13_697 0.90 -1.8 793,414 + PfGW456L13_697 0.90 -1.2 793,414 + PfGW456L13_697 0.90 +1.3 793,415 - +0.7 793,415 - +0.0 793,415 - +0.5 793,460 + -0.2 793,460 + +2.6 793,460 + -0.4 793,460 + +1.0 793,460 + +1.0 793,461 - -0.0 793,504 + +0.7 793,504 + +0.5 793,504 + -0.7 793,505 - -0.1 793,505 - -2.0 793,505 - +1.0 793,505 - +0.6 793,505 - -0.9 793,547 + -0.2 793,548 - -1.0 793,548 - -2.2 793,576 + +0.4 793,576 + +0.8 793,576 + -2.4 793,576 + -0.3 793,577 - -0.8 793,577 - -0.3 793,577 - -1.5 793,577 - -0.9 793,577 - +0.8 793,856 - PfGW456L13_698 0.20 +0.4 793,856 - PfGW456L13_698 0.20 -1.4 793,856 - PfGW456L13_698 0.20 -0.4 793,856 - PfGW456L13_698 0.20 -0.3 793,856 - PfGW456L13_698 0.20 +0.3 793,856 - PfGW456L13_698 0.20 +1.3 793,922 - PfGW456L13_698 0.25 -1.5 793,922 - PfGW456L13_698 0.25 -0.2 793,945 + PfGW456L13_698 0.26 +2.0 793,945 + PfGW456L13_698 0.26 +1.2 793,945 + PfGW456L13_698 0.26 +0.5 793,945 + PfGW456L13_698 0.26 -2.0 793,945 + PfGW456L13_698 0.26 +0.1 793,945 + PfGW456L13_698 0.26 +0.6 793,946 - PfGW456L13_698 0.26 +0.3 793,946 - PfGW456L13_698 0.26 -2.2 793,946 - PfGW456L13_698 0.26 -0.2 794,144 + PfGW456L13_698 0.41 -0.0 794,144 + +0.5 794,144 + PfGW456L13_698 0.41 +0.3 794,144 + PfGW456L13_698 0.41 +1.7 794,144 + PfGW456L13_698 0.41 +1.6 794,144 + PfGW456L13_698 0.41 +0.3 794,144 + PfGW456L13_698 0.41 -0.2 794,144 + PfGW456L13_698 0.41 -1.1 794,144 + PfGW456L13_698 0.41 +0.2 794,144 + PfGW456L13_698 0.41 -0.6 794,145 - PfGW456L13_698 0.41 -1.2 794,145 - PfGW456L13_698 0.41 +0.3 794,145 - PfGW456L13_698 0.41 +0.1 794,145 - PfGW456L13_698 0.41 -0.3 794,145 - PfGW456L13_698 0.41 -1.1 794,145 - PfGW456L13_698 0.41 -0.6 794,145 - PfGW456L13_698 0.41 +1.6 794,145 - PfGW456L13_698 0.41 +0.6 794,145 - PfGW456L13_698 0.41 -0.3 794,145 - PfGW456L13_698 0.41 -0.7 794,145 - PfGW456L13_698 0.41 -1.4 794,145 - PfGW456L13_698 0.41 -0.4 794,145 - PfGW456L13_698 0.41 -1.4 794,146 + PfGW456L13_698 0.41 +0.7 794,146 + PfGW456L13_698 0.41 +1.3 794,146 + PfGW456L13_698 0.41 -0.3 794,146 + PfGW456L13_698 0.41 +1.5 794,147 - PfGW456L13_698 0.41 -1.0 794,172 + PfGW456L13_698 0.43 -1.2 794,172 + PfGW456L13_698 0.43 -0.8 794,172 + PfGW456L13_698 0.43 +0.7 794,172 + PfGW456L13_698 0.43 +0.6 794,173 - PfGW456L13_698 0.43 -0.6 794,173 - PfGW456L13_698 0.43 -1.9 794,173 - PfGW456L13_698 0.43 +0.2 794,176 + PfGW456L13_698 0.43 -1.3 794,176 + PfGW456L13_698 0.43 +0.6 794,176 + PfGW456L13_698 0.43 +1.6 794,176 + PfGW456L13_698 0.43 -0.4 794,176 + PfGW456L13_698 0.43 -0.7 794,176 + PfGW456L13_698 0.43 +0.9 794,176 + PfGW456L13_698 0.43 -2.1 794,176 + PfGW456L13_698 0.43 +1.6 794,177 - PfGW456L13_698 0.43 -0.8 794,442 + PfGW456L13_698 0.62 +1.0 794,442 + PfGW456L13_698 0.62 +0.6 794,509 - PfGW456L13_698 0.67 +0.8 794,531 + PfGW456L13_698 0.68 -0.6 794,531 + PfGW456L13_698 0.68 +0.2 794,532 - PfGW456L13_698 0.68 -2.4 794,532 - PfGW456L13_698 0.68 -0.3 794,532 - PfGW456L13_698 0.68 +1.1 794,663 + PfGW456L13_698 0.78 -1.9 794,797 + PfGW456L13_698 0.87 +2.1 794,798 - PfGW456L13_698 0.87 -0.5 794,798 - PfGW456L13_698 0.87 +0.0 794,798 - PfGW456L13_698 0.87 -1.9 794,798 - PfGW456L13_698 0.87 +0.2 794,929 + -0.1 794,930 - -1.2 794,930 - -1.3 794,952 + +1.1 794,953 - +0.8 794,965 + -0.2 794,965 + -0.5 794,965 + -0.3 794,965 + -0.3 794,965 + -0.6 794,965 + -2.7 794,965 + -0.6 794,965 + +0.1 794,966 - +0.1 794,966 - -2.4 794,966 - -0.3 794,966 - +0.7 794,966 - +0.3 794,966 - -0.8 794,966 - +0.3 794,981 + +0.3 794,981 + +0.1 794,981 + +0.0 794,981 + -0.0 794,981 + +1.4 794,981 + -0.0 794,981 + -0.3 794,981 + -0.0 794,981 + +0.7 794,982 - -1.2 794,982 - +1.6 794,982 - -1.0 794,982 - -2.6 794,982 - -0.7 794,982 - +1.2 794,982 - +0.1 794,982 - -0.6 795,011 + -0.6 795,011 + +0.5 795,011 + +0.2 795,017 + -2.4 795,017 + -0.4 795,017 + -0.5 795,017 + +0.4 795,017 + +1.4 795,018 - -1.3 795,018 - -1.8 795,042 + -1.3 795,043 - +0.2 795,045 + -0.4 795,104 + +1.0 795,104 + -0.8 795,104 + -1.7 795,104 + +1.6 795,104 + -0.4 795,105 - -1.4 795,105 - +0.2 795,105 - +1.4 795,105 - -0.1 795,105 - +1.0 795,105 - -0.9 795,105 - -0.9 795,189 + -0.5 795,189 + -2.0 795,189 + -0.3 795,189 + +1.0 795,190 - -0.8 795,190 - +0.1 795,190 - -0.3 795,311 + +2.2 795,311 + -1.3 795,311 + +0.7 795,311 + -0.3 795,312 - +0.3 795,312 - -0.9 795,312 - -0.4 795,514 + PfGW456L13_699 0.18 +1.1 795,514 + PfGW456L13_699 0.18 -1.7 795,514 + PfGW456L13_699 0.18 -0.7 795,514 + PfGW456L13_699 0.18 -0.0 795,515 - PfGW456L13_699 0.18 +3.3 795,515 - PfGW456L13_699 0.18 +1.3 795,515 - PfGW456L13_699 0.18 +0.0 795,515 - PfGW456L13_699 0.18 +1.4 795,515 - PfGW456L13_699 0.18 +1.7 795,515 - PfGW456L13_699 0.18 +0.3 795,515 - PfGW456L13_699 0.18 +0.4 795,515 - PfGW456L13_699 0.18 +1.0 795,515 - PfGW456L13_699 0.18 -0.9 795,560 + PfGW456L13_699 0.20 -1.5 795,774 + PfGW456L13_699 0.31 -1.4
Or see this region's nucleotide sequence