Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_374

Experiment: D-Gluconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_372 and PfGW456L13_373 are separated by 38 nucleotidesPfGW456L13_373 and PfGW456L13_374 are separated by 6 nucleotidesPfGW456L13_374 and PfGW456L13_375 are separated by 71 nucleotides PfGW456L13_372 - Hydrolases of the alpha/beta superfamily, at 432,196 to 433,170 _372 PfGW456L13_373 - FIG00954739: hypothetical protein, at 433,209 to 433,631 _373 PfGW456L13_374 - FIG00954739: hypothetical protein, at 433,638 to 434,090 _374 PfGW456L13_375 - transport permease protein of gamma-aminobutyrate, at 434,162 to 435,553 _375 Position (kb) 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2at 432.688 kb on + strand, within PfGW456L13_372at 432.688 kb on + strand, within PfGW456L13_372at 432.688 kb on + strand, within PfGW456L13_372at 432.688 kb on + strand, within PfGW456L13_372at 432.689 kb on - strand, within PfGW456L13_372at 432.763 kb on + strand, within PfGW456L13_372at 432.764 kb on - strand, within PfGW456L13_372at 432.950 kb on - strand, within PfGW456L13_372at 432.986 kb on - strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.013 kb on + strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.014 kb on - strand, within PfGW456L13_372at 433.017 kb on + strand, within PfGW456L13_372at 433.017 kb on + strand, within PfGW456L13_372at 433.018 kb on - strand, within PfGW456L13_372at 433.018 kb on - strand, within PfGW456L13_372at 433.079 kb on - strandat 433.091 kb on + strandat 433.091 kb on + strandat 433.091 kb on + strandat 433.091 kb on + strandat 433.092 kb on - strandat 433.195 kb on - strandat 433.360 kb on + strandat 433.360 kb on + strand, within PfGW456L13_373at 433.360 kb on + strand, within PfGW456L13_373at 433.361 kb on - strand, within PfGW456L13_373at 433.361 kb on - strand, within PfGW456L13_373at 433.446 kb on + strand, within PfGW456L13_373at 433.446 kb on + strand, within PfGW456L13_373at 433.447 kb on - strand, within PfGW456L13_373at 433.447 kb on - strand, within PfGW456L13_373at 433.578 kb on + strand, within PfGW456L13_373at 433.578 kb on + strand, within PfGW456L13_373at 433.579 kb on - strand, within PfGW456L13_373at 433.704 kb on - strand, within PfGW456L13_374at 433.770 kb on + strand, within PfGW456L13_374at 433.770 kb on + strand, within PfGW456L13_374at 433.770 kb on + strand, within PfGW456L13_374at 433.771 kb on - strand, within PfGW456L13_374at 433.771 kb on - strand, within PfGW456L13_374at 433.771 kb on - strand, within PfGW456L13_374at 433.859 kb on + strand, within PfGW456L13_374at 434.174 kb on + strandat 434.175 kb on - strandat 434.331 kb on + strand, within PfGW456L13_375at 434.331 kb on + strand, within PfGW456L13_375at 434.332 kb on - strand, within PfGW456L13_375at 434.386 kb on + strand, within PfGW456L13_375at 434.386 kb on + strand, within PfGW456L13_375at 434.387 kb on - strand, within PfGW456L13_375at 434.387 kb on - strand, within PfGW456L13_375at 434.387 kb on - strand, within PfGW456L13_375at 434.431 kb on - strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.496 kb on + strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.497 kb on - strand, within PfGW456L13_375at 434.550 kb on + strand, within PfGW456L13_375at 434.637 kb on + strand, within PfGW456L13_375at 434.637 kb on + strand, within PfGW456L13_375at 434.638 kb on - strand, within PfGW456L13_375at 434.638 kb on - strand, within PfGW456L13_375at 434.638 kb on - strand, within PfGW456L13_375at 434.726 kb on + strand, within PfGW456L13_375at 434.726 kb on + strand, within PfGW456L13_375at 434.726 kb on + strand, within PfGW456L13_375at 434.726 kb on + strand, within PfGW456L13_375at 434.727 kb on - strand, within PfGW456L13_375at 434.727 kb on - strand, within PfGW456L13_375at 434.727 kb on - strand, within PfGW456L13_375at 434.727 kb on - strand, within PfGW456L13_375at 434.727 kb on - strand, within PfGW456L13_375at 434.727 kb on - strand, within PfGW456L13_375at 434.736 kb on + strand, within PfGW456L13_375at 434.736 kb on + strand, within PfGW456L13_375at 434.808 kb on + strand, within PfGW456L13_375at 434.809 kb on - strand, within PfGW456L13_375at 434.809 kb on - strand, within PfGW456L13_375at 434.809 kb on - strand, within PfGW456L13_375at 434.831 kb on - strand, within PfGW456L13_375at 434.831 kb on - strand, within PfGW456L13_375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
remove
432,688 + PfGW456L13_372 0.50 +1.2
432,688 + PfGW456L13_372 0.50 +0.4
432,688 + PfGW456L13_372 0.50 -0.1
432,688 + PfGW456L13_372 0.50 -0.5
432,689 - PfGW456L13_372 0.51 +0.5
432,763 + PfGW456L13_372 0.58 -1.6
432,764 - PfGW456L13_372 0.58 -0.0
432,950 - PfGW456L13_372 0.77 -0.6
432,986 - PfGW456L13_372 0.81 -1.1
433,013 + PfGW456L13_372 0.84 +0.9
433,013 + PfGW456L13_372 0.84 -0.2
433,013 + PfGW456L13_372 0.84 -1.2
433,013 + PfGW456L13_372 0.84 -0.6
433,013 + PfGW456L13_372 0.84 -0.3
433,013 + PfGW456L13_372 0.84 +1.1
433,013 + PfGW456L13_372 0.84 +0.4
433,013 + PfGW456L13_372 0.84 +0.3
433,013 + PfGW456L13_372 0.84 -0.4
433,013 + PfGW456L13_372 0.84 +0.4
433,013 + PfGW456L13_372 0.84 +0.4
433,013 + PfGW456L13_372 0.84 -0.4
433,013 + PfGW456L13_372 0.84 -0.9
433,013 + PfGW456L13_372 0.84 +0.5
433,013 + PfGW456L13_372 0.84 -0.7
433,013 + PfGW456L13_372 0.84 +0.4
433,013 + PfGW456L13_372 0.84 -0.6
433,013 + PfGW456L13_372 0.84 -0.0
433,013 + PfGW456L13_372 0.84 -1.8
433,013 + PfGW456L13_372 0.84 +0.4
433,014 - PfGW456L13_372 0.84 -1.6
433,014 - PfGW456L13_372 0.84 +2.0
433,014 - PfGW456L13_372 0.84 -0.3
433,014 - PfGW456L13_372 0.84 +0.8
433,014 - PfGW456L13_372 0.84 +1.0
433,014 - PfGW456L13_372 0.84 -0.5
433,014 - PfGW456L13_372 0.84 +0.1
433,014 - PfGW456L13_372 0.84 +0.2
433,014 - PfGW456L13_372 0.84 -1.3
433,014 - PfGW456L13_372 0.84 -1.4
433,014 - PfGW456L13_372 0.84 -1.4
433,014 - PfGW456L13_372 0.84 -0.3
433,014 - PfGW456L13_372 0.84 +0.8
433,014 - PfGW456L13_372 0.84 +2.4
433,014 - PfGW456L13_372 0.84 -0.4
433,014 - PfGW456L13_372 0.84 +0.4
433,014 - PfGW456L13_372 0.84 +1.2
433,014 - PfGW456L13_372 0.84 -0.9
433,014 - PfGW456L13_372 0.84 +0.3
433,017 + PfGW456L13_372 0.84 -0.3
433,017 + PfGW456L13_372 0.84 -2.5
433,018 - PfGW456L13_372 0.84 -0.3
433,018 - PfGW456L13_372 0.84 +0.2
433,079 - -1.0
433,091 + -0.7
433,091 + +1.3
433,091 + +1.6
433,091 + -1.1
433,092 - -0.3
433,195 - -1.7
433,360 + +2.6
433,360 + PfGW456L13_373 0.36 +0.8
433,360 + PfGW456L13_373 0.36 +1.1
433,361 - PfGW456L13_373 0.36 +1.6
433,361 - PfGW456L13_373 0.36 +1.1
433,446 + PfGW456L13_373 0.56 +2.0
433,446 + PfGW456L13_373 0.56 +2.3
433,447 - PfGW456L13_373 0.56 -1.0
433,447 - PfGW456L13_373 0.56 +0.4
433,578 + PfGW456L13_373 0.87 +0.7
433,578 + PfGW456L13_373 0.87 +0.8
433,579 - PfGW456L13_373 0.87 -0.1
433,704 - PfGW456L13_374 0.15 -0.8
433,770 + PfGW456L13_374 0.29 +0.3
433,770 + PfGW456L13_374 0.29 -1.5
433,770 + PfGW456L13_374 0.29 -1.5
433,771 - PfGW456L13_374 0.29 +1.0
433,771 - PfGW456L13_374 0.29 -0.1
433,771 - PfGW456L13_374 0.29 +1.8
433,859 + PfGW456L13_374 0.49 +2.0
434,174 + +0.8
434,175 - -1.2
434,331 + PfGW456L13_375 0.12 -1.8
434,331 + PfGW456L13_375 0.12 +1.0
434,332 - PfGW456L13_375 0.12 +2.2
434,386 + PfGW456L13_375 0.16 +1.4
434,386 + PfGW456L13_375 0.16 +1.0
434,387 - PfGW456L13_375 0.16 -0.3
434,387 - PfGW456L13_375 0.16 +0.3
434,387 - PfGW456L13_375 0.16 +0.2
434,431 - PfGW456L13_375 0.19 -0.4
434,496 + PfGW456L13_375 0.24 -0.2
434,496 + PfGW456L13_375 0.24 -0.8
434,496 + PfGW456L13_375 0.24 -0.6
434,496 + PfGW456L13_375 0.24 +0.0
434,496 + PfGW456L13_375 0.24 +1.0
434,496 + PfGW456L13_375 0.24 +0.0
434,496 + PfGW456L13_375 0.24 +0.6
434,496 + PfGW456L13_375 0.24 +0.4
434,496 + PfGW456L13_375 0.24 +2.2
434,497 - PfGW456L13_375 0.24 +0.6
434,497 - PfGW456L13_375 0.24 +0.9
434,497 - PfGW456L13_375 0.24 -0.6
434,497 - PfGW456L13_375 0.24 -0.1
434,497 - PfGW456L13_375 0.24 +0.6
434,497 - PfGW456L13_375 0.24 +0.2
434,497 - PfGW456L13_375 0.24 +1.1
434,497 - PfGW456L13_375 0.24 -1.4
434,497 - PfGW456L13_375 0.24 +1.7
434,550 + PfGW456L13_375 0.28 -0.5
434,637 + PfGW456L13_375 0.34 +0.6
434,637 + PfGW456L13_375 0.34 +0.2
434,638 - PfGW456L13_375 0.34 -0.3
434,638 - PfGW456L13_375 0.34 +0.3
434,638 - PfGW456L13_375 0.34 +0.6
434,726 + PfGW456L13_375 0.41 +0.7
434,726 + PfGW456L13_375 0.41 +0.6
434,726 + PfGW456L13_375 0.41 -0.4
434,726 + PfGW456L13_375 0.41 -0.4
434,727 - PfGW456L13_375 0.41 +0.4
434,727 - PfGW456L13_375 0.41 +0.2
434,727 - PfGW456L13_375 0.41 -0.0
434,727 - PfGW456L13_375 0.41 -0.3
434,727 - PfGW456L13_375 0.41 +0.5
434,727 - PfGW456L13_375 0.41 -1.6
434,736 + PfGW456L13_375 0.41 +0.4
434,736 + PfGW456L13_375 0.41 -0.3
434,808 + PfGW456L13_375 0.46 +0.7
434,809 - PfGW456L13_375 0.46 -0.1
434,809 - PfGW456L13_375 0.46 -1.6
434,809 - PfGW456L13_375 0.46 -0.2
434,831 - PfGW456L13_375 0.48 -2.3
434,831 - PfGW456L13_375 0.48 -1.8

Or see this region's nucleotide sequence