Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_346 and PfGW456L13_347 overlap by 4 nucleotides PfGW456L13_347 and PfGW456L13_348 are separated by 556 nucleotides PfGW456L13_348 and PfGW456L13_349 overlap by 2 nucleotides
PfGW456L13_346 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 406,977 to 408,062
_346
PfGW456L13_347 - Nitrogen regulation protein NR(I), at 408,059 to 409,495
_347
PfGW456L13_348 - FIG00955429: hypothetical protein, at 410,052 to 410,492
_348
PfGW456L13_349 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 410,491 to 410,946
_349
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 407.064 kb on + strand at 407.064 kb on + strand at 407.064 kb on + strand at 407.065 kb on - strand at 407.065 kb on - strand at 407.065 kb on - strand at 407.065 kb on - strand at 407.065 kb on - strand at 407.065 kb on - strand at 407.263 kb on + strand, within PfGW456L13_346 at 407.264 kb on - strand, within PfGW456L13_346 at 407.264 kb on - strand, within PfGW456L13_346 at 407.484 kb on + strand, within PfGW456L13_346 at 407.522 kb on + strand, within PfGW456L13_346 at 407.523 kb on - strand, within PfGW456L13_346 at 407.523 kb on - strand, within PfGW456L13_346 at 407.656 kb on - strand, within PfGW456L13_346 at 408.068 kb on - strand at 408.341 kb on + strand, within PfGW456L13_347 at 408.342 kb on - strand, within PfGW456L13_347 at 408.342 kb on - strand, within PfGW456L13_347 at 408.362 kb on + strand, within PfGW456L13_347 at 408.764 kb on - strand, within PfGW456L13_347 at 408.845 kb on + strand, within PfGW456L13_347 at 409.100 kb on + strand, within PfGW456L13_347 at 409.100 kb on + strand, within PfGW456L13_347 at 409.101 kb on - strand, within PfGW456L13_347 at 409.101 kb on - strand, within PfGW456L13_347 at 409.101 kb on - strand, within PfGW456L13_347 at 409.101 kb on - strand, within PfGW456L13_347 at 409.147 kb on + strand, within PfGW456L13_347 at 409.148 kb on - strand, within PfGW456L13_347 at 409.148 kb on - strand, within PfGW456L13_347 at 409.148 kb on - strand, within PfGW456L13_347 at 409.148 kb on - strand, within PfGW456L13_347 at 409.494 kb on - strand at 409.504 kb on + strand at 409.504 kb on + strand at 409.504 kb on + strand at 409.505 kb on - strand at 409.505 kb on - strand at 409.507 kb on + strand at 409.507 kb on + strand at 409.507 kb on + strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.508 kb on - strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.550 kb on + strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.551 kb on - strand at 409.628 kb on + strand at 409.715 kb on + strand at 409.716 kb on - strand at 409.793 kb on + strand at 409.793 kb on + strand at 409.794 kb on - strand at 409.795 kb on + strand at 409.817 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.893 kb on + strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.894 kb on - strand at 409.948 kb on - strand at 409.973 kb on + strand at 409.973 kb on + strand at 409.973 kb on + strand at 409.973 kb on + strand at 409.974 kb on - strand at 410.027 kb on - strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.053 kb on + strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.054 kb on - strand at 410.427 kb on + strand, within PfGW456L13_348 at 410.427 kb on + strand, within PfGW456L13_348 at 410.428 kb on - strand, within PfGW456L13_348 at 410.428 kb on - strand, within PfGW456L13_348 at 410.428 kb on - strand, within PfGW456L13_348 at 410.456 kb on + strand at 410.456 kb on + strand at 410.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 407,064 + +2.3 407,064 + -0.1 407,064 + +0.6 407,065 - -0.6 407,065 - +0.1 407,065 - +0.7 407,065 - -0.3 407,065 - +0.0 407,065 - -1.6 407,263 + PfGW456L13_346 0.26 +0.1 407,264 - PfGW456L13_346 0.26 +0.5 407,264 - PfGW456L13_346 0.26 -1.0 407,484 + PfGW456L13_346 0.47 +2.9 407,522 + PfGW456L13_346 0.50 +0.6 407,523 - PfGW456L13_346 0.50 -1.8 407,523 - PfGW456L13_346 0.50 -1.1 407,656 - PfGW456L13_346 0.63 +2.1 408,068 - -0.6 408,341 + PfGW456L13_347 0.20 +0.1 408,342 - PfGW456L13_347 0.20 -0.6 408,342 - PfGW456L13_347 0.20 -2.3 408,362 + PfGW456L13_347 0.21 -0.7 408,764 - PfGW456L13_347 0.49 +0.1 408,845 + PfGW456L13_347 0.55 -0.2 409,100 + PfGW456L13_347 0.72 -0.6 409,100 + PfGW456L13_347 0.72 +0.1 409,101 - PfGW456L13_347 0.73 -2.1 409,101 - PfGW456L13_347 0.73 -0.1 409,101 - PfGW456L13_347 0.73 -2.0 409,101 - PfGW456L13_347 0.73 -0.8 409,147 + PfGW456L13_347 0.76 +0.8 409,148 - PfGW456L13_347 0.76 -1.1 409,148 - PfGW456L13_347 0.76 -1.1 409,148 - PfGW456L13_347 0.76 -0.4 409,148 - PfGW456L13_347 0.76 -2.9 409,494 - -1.6 409,504 + +0.2 409,504 + +0.8 409,504 + -0.5 409,505 - +0.2 409,505 - -0.2 409,507 + -0.3 409,507 + -2.0 409,507 + -2.5 409,508 - -0.2 409,508 - -0.8 409,508 - +0.6 409,508 - -0.1 409,508 - +0.9 409,550 + -1.2 409,550 + +0.1 409,550 + -1.5 409,550 + +1.6 409,550 + -0.3 409,550 + +0.5 409,551 - -0.2 409,551 - -0.4 409,551 - +0.6 409,551 - -1.1 409,551 - +0.3 409,628 + +0.7 409,715 + -1.0 409,716 - -0.6 409,793 + +0.6 409,793 + -0.6 409,794 - -0.0 409,795 + -2.7 409,817 + +0.9 409,893 + -1.3 409,893 + -1.5 409,893 + -0.3 409,893 + -0.2 409,893 + +1.3 409,893 + +0.3 409,893 + -0.5 409,894 - -0.3 409,894 - -1.0 409,894 - -0.6 409,894 - +0.8 409,894 - -0.5 409,894 - -1.5 409,894 - +0.7 409,894 - +0.6 409,894 - +0.8 409,894 - -1.0 409,948 - +0.9 409,973 + +0.6 409,973 + -1.8 409,973 + -1.8 409,973 + -0.4 409,974 - +0.2 410,027 - -1.2 410,053 + -1.1 410,053 + -0.7 410,053 + +1.1 410,053 + +0.2 410,053 + -0.2 410,053 + +1.1 410,054 - -1.9 410,054 - +0.3 410,054 - +0.5 410,054 - -1.1 410,054 - +1.1 410,054 - +1.6 410,427 + PfGW456L13_348 0.85 -0.7 410,427 + PfGW456L13_348 0.85 -1.0 410,428 - PfGW456L13_348 0.85 +1.4 410,428 - PfGW456L13_348 0.85 +1.4 410,428 - PfGW456L13_348 0.85 -0.1 410,456 + -0.5 410,456 + -0.9 410,457 - -0.1
Or see this region's nucleotide sequence