Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_294

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_293 and PfGW456L13_294 are separated by 115 nucleotidesPfGW456L13_294 and PfGW456L13_295 are separated by 59 nucleotidesPfGW456L13_295 and PfGW456L13_296 are separated by 192 nucleotides PfGW456L13_293 - Poly(3-hydroxyalkanoate) depolymerase, at 344,927 to 345,781 _293 PfGW456L13_294 - Polyhydroxyalkanoic acid synthase, at 345,897 to 347,579 _294 PfGW456L13_295 - Transcriptional regulator PhaD, at 347,639 to 348,259 _295 PfGW456L13_296 - Polyhydroxyalkanoate granule-associated protein PhaF, at 348,452 to 349,288 _296 Position (kb) 345 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 345.194 kb on + strand, within PfGW456L13_293at 345.195 kb on - strand, within PfGW456L13_293at 345.264 kb on - strand, within PfGW456L13_293at 345.374 kb on + strand, within PfGW456L13_293at 345.374 kb on + strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.375 kb on - strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.416 kb on + strand, within PfGW456L13_293at 345.417 kb on - strand, within PfGW456L13_293at 345.494 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.497 kb on + strand, within PfGW456L13_293at 345.498 kb on - strand, within PfGW456L13_293at 345.498 kb on - strand, within PfGW456L13_293at 345.570 kb on + strand, within PfGW456L13_293at 345.570 kb on + strand, within PfGW456L13_293at 345.571 kb on - strand, within PfGW456L13_293at 345.779 kb on + strandat 345.779 kb on + strandat 345.780 kb on - strandat 345.780 kb on - strandat 345.839 kb on + strandat 345.839 kb on + strandat 345.840 kb on - strandat 345.840 kb on - strandat 345.840 kb on - strandat 345.870 kb on - strandat 345.965 kb on + strandat 346.004 kb on + strandat 346.004 kb on + strandat 346.004 kb on + strandat 346.005 kb on - strandat 346.005 kb on - strandat 346.185 kb on + strand, within PfGW456L13_294at 346.186 kb on - strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.190 kb on + strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.191 kb on - strand, within PfGW456L13_294at 346.512 kb on + strand, within PfGW456L13_294at 346.536 kb on + strand, within PfGW456L13_294at 346.537 kb on - strand, within PfGW456L13_294at 346.578 kb on + strand, within PfGW456L13_294at 346.578 kb on + strand, within PfGW456L13_294at 346.579 kb on - strand, within PfGW456L13_294at 346.579 kb on - strand, within PfGW456L13_294at 346.582 kb on - strand, within PfGW456L13_294at 346.582 kb on - strand, within PfGW456L13_294at 346.621 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.705 kb on - strand, within PfGW456L13_294at 346.717 kb on + strand, within PfGW456L13_294at 346.718 kb on - strand, within PfGW456L13_294at 346.863 kb on + strand, within PfGW456L13_294at 346.863 kb on + strand, within PfGW456L13_294at 346.864 kb on - strand, within PfGW456L13_294at 346.954 kb on - strand, within PfGW456L13_294at 346.954 kb on - strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.966 kb on + strand, within PfGW456L13_294at 346.967 kb on - strand, within PfGW456L13_294at 346.967 kb on - strand, within PfGW456L13_294at 347.031 kb on + strand, within PfGW456L13_294at 347.032 kb on - strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.046 kb on + strand, within PfGW456L13_294at 347.047 kb on - strand, within PfGW456L13_294at 347.047 kb on - strand, within PfGW456L13_294at 347.047 kb on - strand, within PfGW456L13_294at 347.278 kb on - strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.379 kb on + strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.380 kb on - strand, within PfGW456L13_294at 347.421 kb on + strandat 347.422 kb on - strandat 347.422 kb on - strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.424 kb on + strandat 347.425 kb on - strandat 347.425 kb on - strandat 347.425 kb on - strandat 347.425 kb on - strandat 347.533 kb on - strandat 347.558 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.562 kb on + strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.563 kb on - strandat 347.627 kb on + strandat 347.628 kb on - strandat 347.628 kb on - strandat 347.756 kb on + strand, within PfGW456L13_295at 347.757 kb on - strand, within PfGW456L13_295at 347.759 kb on + strand, within PfGW456L13_295at 347.760 kb on - strand, within PfGW456L13_295at 347.760 kb on - strand, within PfGW456L13_295at 348.119 kb on + strand, within PfGW456L13_295at 348.165 kb on - strand, within PfGW456L13_295at 348.165 kb on - strand, within PfGW456L13_295at 348.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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345,194 + PfGW456L13_293 0.31 -2.4
345,195 - PfGW456L13_293 0.31 +1.4
345,264 - PfGW456L13_293 0.39 -0.9
345,374 + PfGW456L13_293 0.52 +1.8
345,374 + PfGW456L13_293 0.52 +0.2
345,375 - PfGW456L13_293 0.52 -1.0
345,375 - PfGW456L13_293 0.52 +0.3
345,375 - PfGW456L13_293 0.52 -0.0
345,375 - PfGW456L13_293 0.52 -0.3
345,375 - PfGW456L13_293 0.52 +0.8
345,375 - PfGW456L13_293 0.52 -0.5
345,416 + PfGW456L13_293 0.57 -0.7
345,416 + PfGW456L13_293 0.57 -0.4
345,416 + PfGW456L13_293 0.57 -0.9
345,416 + PfGW456L13_293 0.57 -1.5
345,417 - PfGW456L13_293 0.57 +0.3
345,494 + PfGW456L13_293 0.66 -0.5
345,497 + PfGW456L13_293 0.67 -1.2
345,497 + PfGW456L13_293 0.67 +1.0
345,497 + PfGW456L13_293 0.67 +0.4
345,498 - PfGW456L13_293 0.67 +0.6
345,498 - PfGW456L13_293 0.67 -1.9
345,570 + PfGW456L13_293 0.75 -1.4
345,570 + PfGW456L13_293 0.75 -1.9
345,571 - PfGW456L13_293 0.75 -0.1
345,779 + +0.1
345,779 + +0.7
345,780 - -1.8
345,780 - -2.4
345,839 + +0.4
345,839 + +1.6
345,840 - +0.7
345,840 - +1.2
345,840 - +1.2
345,870 - +1.4
345,965 + -0.6
346,004 + +0.3
346,004 + +2.0
346,004 + -1.5
346,005 - +0.9
346,005 - +0.1
346,185 + PfGW456L13_294 0.17 -0.1
346,186 - PfGW456L13_294 0.17 -1.9
346,190 + PfGW456L13_294 0.17 +1.1
346,190 + PfGW456L13_294 0.17 -1.6
346,190 + PfGW456L13_294 0.17 -1.4
346,190 + PfGW456L13_294 0.17 -2.0
346,190 + PfGW456L13_294 0.17 +0.3
346,191 - PfGW456L13_294 0.17 -1.7
346,191 - PfGW456L13_294 0.17 +0.2
346,191 - PfGW456L13_294 0.17 +1.2
346,191 - PfGW456L13_294 0.17 -1.3
346,191 - PfGW456L13_294 0.17 +3.9
346,191 - PfGW456L13_294 0.17 +0.9
346,191 - PfGW456L13_294 0.17 +1.3
346,191 - PfGW456L13_294 0.17 -0.4
346,512 + PfGW456L13_294 0.37 +0.1
346,536 + PfGW456L13_294 0.38 +0.2
346,537 - PfGW456L13_294 0.38 +0.7
346,578 + PfGW456L13_294 0.40 -0.3
346,578 + PfGW456L13_294 0.40 -2.0
346,579 - PfGW456L13_294 0.41 +1.8
346,579 - PfGW456L13_294 0.41 -1.0
346,582 - PfGW456L13_294 0.41 -0.3
346,582 - PfGW456L13_294 0.41 +0.0
346,621 - PfGW456L13_294 0.43 +0.6
346,705 - PfGW456L13_294 0.48 +0.4
346,705 - PfGW456L13_294 0.48 +0.2
346,705 - PfGW456L13_294 0.48 +2.2
346,717 + PfGW456L13_294 0.49 +0.8
346,718 - PfGW456L13_294 0.49 -1.1
346,863 + PfGW456L13_294 0.57 -1.3
346,863 + PfGW456L13_294 0.57 +1.9
346,864 - PfGW456L13_294 0.57 +0.8
346,954 - PfGW456L13_294 0.63 -1.3
346,954 - PfGW456L13_294 0.63 -0.4
346,966 + PfGW456L13_294 0.64 -1.1
346,966 + PfGW456L13_294 0.64 +0.6
346,966 + PfGW456L13_294 0.64 +0.1
346,966 + PfGW456L13_294 0.64 +0.5
346,966 + PfGW456L13_294 0.64 -0.1
346,967 - PfGW456L13_294 0.64 +0.2
346,967 - PfGW456L13_294 0.64 -0.2
347,031 + PfGW456L13_294 0.67 -1.1
347,032 - PfGW456L13_294 0.67 +0.6
347,046 + PfGW456L13_294 0.68 -1.0
347,046 + PfGW456L13_294 0.68 +1.1
347,046 + PfGW456L13_294 0.68 +0.2
347,046 + PfGW456L13_294 0.68 -0.2
347,047 - PfGW456L13_294 0.68 +0.0
347,047 - PfGW456L13_294 0.68 +0.9
347,047 - PfGW456L13_294 0.68 -1.1
347,278 - PfGW456L13_294 0.82 +1.6
347,379 + PfGW456L13_294 0.88 +0.8
347,379 + PfGW456L13_294 0.88 -0.1
347,379 + PfGW456L13_294 0.88 -0.1
347,379 + PfGW456L13_294 0.88 -0.0
347,380 - PfGW456L13_294 0.88 +1.6
347,380 - PfGW456L13_294 0.88 -1.1
347,380 - PfGW456L13_294 0.88 -2.4
347,380 - PfGW456L13_294 0.88 -1.1
347,380 - PfGW456L13_294 0.88 -0.6
347,380 - PfGW456L13_294 0.88 -0.3
347,380 - PfGW456L13_294 0.88 -0.4
347,380 - PfGW456L13_294 0.88 +0.3
347,421 + +0.3
347,422 - -1.3
347,422 - +0.1
347,424 + +1.5
347,424 + +2.5
347,424 + +0.3
347,424 + -0.5
347,424 + +1.0
347,425 - +0.7
347,425 - -0.3
347,425 - -1.0
347,425 - -1.9
347,533 - -1.2
347,558 + +0.5
347,562 + +0.6
347,562 + -0.6
347,562 + +0.7
347,562 + -0.5
347,562 + +0.4
347,562 + -0.1
347,562 + +0.7
347,562 + +0.2
347,562 + -0.4
347,563 - -1.1
347,563 - +1.5
347,563 - +0.6
347,563 - +0.8
347,563 - +0.1
347,563 - +0.0
347,563 - -2.3
347,563 - -0.7
347,563 - +0.6
347,563 - -0.0
347,563 - -1.2
347,627 + +0.2
347,628 - +0.5
347,628 - +0.1
347,756 + PfGW456L13_295 0.19 -0.1
347,757 - PfGW456L13_295 0.19 +0.2
347,759 + PfGW456L13_295 0.19 +0.9
347,760 - PfGW456L13_295 0.19 -0.7
347,760 - PfGW456L13_295 0.19 +0.6
348,119 + PfGW456L13_295 0.77 +0.8
348,165 - PfGW456L13_295 0.85 +1.4
348,165 - PfGW456L13_295 0.85 +1.6
348,240 - -1.4

Or see this region's nucleotide sequence