Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1857

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1855 and PfGW456L13_1856 are separated by 14 nucleotidesPfGW456L13_1856 and PfGW456L13_1857 overlap by 1 nucleotidesPfGW456L13_1857 and PfGW456L13_1858 are separated by 53 nucleotides PfGW456L13_1855 - MotA/TolQ/ExbB proton channel family protein, at 2,041,844 to 2,042,539 _1855 PfGW456L13_1856 - Tol biopolymer transport system, TolR protein, at 2,042,554 to 2,043,015 _1856 PfGW456L13_1857 - TolA protein, at 2,043,015 to 2,044,094 _1857 PfGW456L13_1858 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 2,044,148 to 2,045,392 _1858 Position (kb) 2043 2044 2045Strain fitness (log2 ratio) -1 0 1at 2042.537 kb on + strandat 2042.537 kb on + strandat 2042.537 kb on + strandat 2042.537 kb on + strandat 2043.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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2,042,537 + -0.7
2,042,537 + +1.4
2,042,537 + -1.0
2,042,537 + +0.7
2,043,051 + -0.8

Or see this region's nucleotide sequence