Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_153 and PfGW456L13_154 are separated by 12 nucleotides PfGW456L13_154 and PfGW456L13_155 are separated by 93 nucleotides PfGW456L13_155 and PfGW456L13_156 overlap by 1 nucleotides
PfGW456L13_153 - GTP-binding protein HflX, at 177,295 to 178,596
_153
PfGW456L13_154 - RNA-binding protein Hfq, at 178,609 to 178,869
_154
PfGW456L13_155 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 178,963 to 179,934
_155
PfGW456L13_156 - DNA mismatch repair protein MutL, at 179,934 to 181,844
_156
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.267 kb on - strand, within PfGW456L13_153 at 178.311 kb on + strand, within PfGW456L13_153 at 178.311 kb on + strand, within PfGW456L13_153 at 178.312 kb on - strand, within PfGW456L13_153 at 178.607 kb on + strand at 178.608 kb on - strand at 178.608 kb on - strand at 178.608 kb on - strand at 178.608 kb on - strand at 178.618 kb on - strand at 178.896 kb on - strand at 178.898 kb on - strand at 178.898 kb on - strand at 178.898 kb on - strand at 178.992 kb on - strand at 179.148 kb on - strand, within PfGW456L13_155 at 179.148 kb on - strand, within PfGW456L13_155 at 179.170 kb on + strand, within PfGW456L13_155 at 179.171 kb on - strand, within PfGW456L13_155 at 179.171 kb on - strand, within PfGW456L13_155 at 179.179 kb on + strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.212 kb on - strand, within PfGW456L13_155 at 179.275 kb on - strand, within PfGW456L13_155 at 179.291 kb on - strand, within PfGW456L13_155 at 179.615 kb on + strand, within PfGW456L13_155 at 179.616 kb on - strand, within PfGW456L13_155 at 179.616 kb on - strand, within PfGW456L13_155 at 179.616 kb on - strand, within PfGW456L13_155 at 179.616 kb on - strand, within PfGW456L13_155 at 179.616 kb on - strand, within PfGW456L13_155 at 179.715 kb on - strand, within PfGW456L13_155 at 179.715 kb on - strand, within PfGW456L13_155 at 179.866 kb on + strand at 180.406 kb on + strand, within PfGW456L13_156 at 180.406 kb on + strand, within PfGW456L13_156 at 180.406 kb on + strand, within PfGW456L13_156 at 180.406 kb on + strand, within PfGW456L13_156 at 180.406 kb on + strand, within PfGW456L13_156 at 180.406 kb on + strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.407 kb on - strand, within PfGW456L13_156 at 180.475 kb on + strand, within PfGW456L13_156 at 180.475 kb on + strand, within PfGW456L13_156 at 180.475 kb on + strand, within PfGW456L13_156 at 180.476 kb on - strand, within PfGW456L13_156 at 180.476 kb on - strand, within PfGW456L13_156 at 180.583 kb on + strand, within PfGW456L13_156 at 180.635 kb on - strand, within PfGW456L13_156 at 180.635 kb on - strand, within PfGW456L13_156 at 180.641 kb on - strand, within PfGW456L13_156 at 180.641 kb on - strand, within PfGW456L13_156 at 180.641 kb on - strand, within PfGW456L13_156 at 180.647 kb on - strand, within PfGW456L13_156 at 180.857 kb on - strand, within PfGW456L13_156
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 177,978 + PfGW456L13_153 0.52 +0.5 177,978 + PfGW456L13_153 0.52 -1.5 177,978 + PfGW456L13_153 0.52 +0.2 177,978 + PfGW456L13_153 0.52 -0.1 177,979 - PfGW456L13_153 0.53 -0.4 177,979 - PfGW456L13_153 0.53 +1.6 177,979 - PfGW456L13_153 0.53 -0.2 177,979 - PfGW456L13_153 0.53 -0.1 178,195 - PfGW456L13_153 0.69 -1.0 178,195 - PfGW456L13_153 0.69 -0.4 178,195 - PfGW456L13_153 0.69 +0.1 178,267 - PfGW456L13_153 0.75 +0.6 178,311 + PfGW456L13_153 0.78 -0.8 178,311 + PfGW456L13_153 0.78 +0.2 178,312 - PfGW456L13_153 0.78 -1.3 178,607 + -0.3 178,608 - -0.5 178,608 - +0.5 178,608 - -0.6 178,608 - -0.2 178,618 - -1.8 178,896 - -1.6 178,898 - +0.6 178,898 - +0.7 178,898 - -0.9 178,992 - +0.6 179,148 - PfGW456L13_155 0.19 +0.3 179,148 - PfGW456L13_155 0.19 +0.9 179,170 + PfGW456L13_155 0.21 +1.1 179,171 - PfGW456L13_155 0.21 +0.1 179,171 - PfGW456L13_155 0.21 +1.3 179,179 + PfGW456L13_155 0.22 +1.1 179,180 - PfGW456L13_155 0.22 +2.5 179,180 - PfGW456L13_155 0.22 -1.2 179,180 - PfGW456L13_155 0.22 -0.3 179,180 - PfGW456L13_155 0.22 -0.1 179,212 - PfGW456L13_155 0.26 +0.9 179,275 - PfGW456L13_155 0.32 -0.9 179,291 - PfGW456L13_155 0.34 -0.8 179,615 + PfGW456L13_155 0.67 +1.1 179,616 - PfGW456L13_155 0.67 +0.4 179,616 - PfGW456L13_155 0.67 -0.6 179,616 - PfGW456L13_155 0.67 +1.1 179,616 - PfGW456L13_155 0.67 -0.3 179,616 - PfGW456L13_155 0.67 +1.1 179,715 - PfGW456L13_155 0.77 -0.4 179,715 - PfGW456L13_155 0.77 +0.7 179,866 + -0.7 180,406 + PfGW456L13_156 0.25 +0.5 180,406 + PfGW456L13_156 0.25 -0.3 180,406 + PfGW456L13_156 0.25 -1.3 180,406 + PfGW456L13_156 0.25 -0.1 180,406 + PfGW456L13_156 0.25 -0.3 180,406 + PfGW456L13_156 0.25 -0.1 180,407 - PfGW456L13_156 0.25 +1.2 180,407 - PfGW456L13_156 0.25 +0.6 180,407 - PfGW456L13_156 0.25 +1.5 180,407 - PfGW456L13_156 0.25 -1.9 180,407 - PfGW456L13_156 0.25 -1.3 180,407 - PfGW456L13_156 0.25 -1.5 180,407 - PfGW456L13_156 0.25 -0.4 180,407 - PfGW456L13_156 0.25 -0.3 180,407 - PfGW456L13_156 0.25 -0.1 180,407 - PfGW456L13_156 0.25 +0.4 180,407 - PfGW456L13_156 0.25 -1.1 180,475 + PfGW456L13_156 0.28 -1.2 180,475 + PfGW456L13_156 0.28 -1.2 180,475 + PfGW456L13_156 0.28 -0.8 180,476 - PfGW456L13_156 0.28 -2.6 180,476 - PfGW456L13_156 0.28 -1.5 180,583 + PfGW456L13_156 0.34 +1.1 180,635 - PfGW456L13_156 0.37 +1.5 180,635 - PfGW456L13_156 0.37 +0.3 180,641 - PfGW456L13_156 0.37 +1.8 180,641 - PfGW456L13_156 0.37 -0.6 180,641 - PfGW456L13_156 0.37 -1.8 180,647 - PfGW456L13_156 0.37 -0.8 180,857 - PfGW456L13_156 0.48 -0.2
Or see this region's nucleotide sequence