Strain Fitness in Pseudomonas sp. RS175 around PFR28_04263

Experiment: L-Hydroxyproline carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Hydroxyproline carbon 10 mM
4,864,614	+		PFR28_04261	0.76	+0.2
4,864,615	-		PFR28_04261	0.76	+0.9
4,864,615	-		PFR28_04261	0.76	+0.4
4,864,615	-		PFR28_04261	0.76	-1.4
4,864,648	+		PFR28_04261	0.78	-0.7
4,864,771	+		PFR28_04261	0.86	+0.7
4,864,771	+		PFR28_04261	0.86	-0.7
4,864,771	+		PFR28_04261	0.86	+0.1
4,864,771	+		PFR28_04261	0.86	-1.2
4,864,771	+		PFR28_04261	0.86	-1.5
4,864,771	+		PFR28_04261	0.86	+1.6
4,864,771	+		PFR28_04261	0.86	-0.3
4,864,771	+		PFR28_04261	0.86	-1.2
4,864,772	-		PFR28_04261	0.86	+1.9
4,864,772	-		PFR28_04261	0.86	+1.1
4,864,789	+		PFR28_04261	0.88	-0.3
4,864,790	-		PFR28_04261	0.88	-1.2
4,864,790	-		PFR28_04261	0.88	+0.6
4,864,973	-				-0.6
4,864,973	-				-2.1
4,865,012	+				+1.0
4,865,029	+				-2.3
4,865,029	+				+0.2
4,865,029	+				+0.1
4,865,029	+				-0.2
4,865,030	-				-1.9
4,865,030	-				-1.4
4,865,030	-				+0.3
4,865,110	+		PFR28_04262	0.22	-2.2
4,865,142	+		PFR28_04262	0.27	-1.7
4,865,142	+		PFR28_04262	0.27	-0.4
4,865,142	+		PFR28_04262	0.27	-1.5
4,865,143	-		PFR28_04262	0.28	-1.5
4,865,143	-		PFR28_04262	0.28	-0.8
4,865,143	-		PFR28_04262	0.28	+0.1
4,865,143	-		PFR28_04262	0.28	-0.7
4,865,143	-		PFR28_04262	0.28	-1.4
4,865,143	-		PFR28_04262	0.28	-2.2
4,865,143	-		PFR28_04262	0.28	-0.0
4,865,368	+		PFR28_04262	0.64	-0.4
4,865,368	+		PFR28_04262	0.64	+0.4
4,865,369	-		PFR28_04262	0.65	-1.1
4,865,369	-		PFR28_04262	0.65	+0.5
4,865,369	-		PFR28_04262	0.65	-2.7
4,865,460	+		PFR28_04262	0.79	+0.1
4,865,460	+		PFR28_04262	0.79	-1.9
4,865,460	+		PFR28_04262	0.79	-2.4
4,865,460	+		PFR28_04262	0.79	-0.4
4,865,461	-		PFR28_04262	0.80	-0.8
4,865,497	+		PFR28_04262	0.85	-0.7
4,865,497	+		PFR28_04262	0.85	-1.4
4,865,497	+		PFR28_04262	0.85	-1.4
4,865,498	-		PFR28_04262	0.86	-2.5
4,865,547	+				+2.1
4,865,548	-				-2.4
4,865,564	+				-0.3
4,865,564	+				+0.8
4,865,564	+				+0.2
4,865,564	+				+0.0
4,865,564	+				+0.8
4,865,565	-				-1.1
4,865,565	-				-1.9
4,865,565	-				-0.4
4,865,565	-				+0.3
4,865,565	-				-1.3
4,865,565	-				-1.3
4,865,565	-				+0.3
4,865,565	-				+0.5
4,865,565	-				-0.8
4,865,690	+				+1.4
4,865,690	+				+0.9
4,865,807	+		PFR28_04263	0.20	+0.5
4,865,807	+		PFR28_04263	0.20	+0.2
4,865,807	+		PFR28_04263	0.20	+1.0
4,865,807	+		PFR28_04263	0.20	+0.3
4,865,808	-		PFR28_04263	0.20	-1.4
4,865,808	-		PFR28_04263	0.20	-0.6
4,865,808	-		PFR28_04263	0.20	-0.9
4,865,842	+		PFR28_04263	0.23	+0.3
4,865,842	+		PFR28_04263	0.23	-0.1
4,865,842	+		PFR28_04263	0.23	+0.7
4,865,842	+		PFR28_04263	0.23	+0.4
4,865,842	+		PFR28_04263	0.23	-0.4
4,865,843	-		PFR28_04263	0.23	+0.1
4,865,843	-		PFR28_04263	0.23	-0.2
4,865,843	-		PFR28_04263	0.23	-1.7
4,865,843	-		PFR28_04263	0.23	+0.3
4,865,843	-		PFR28_04263	0.23	+1.8
4,865,843	-		PFR28_04263	0.23	+0.3
4,865,843	-		PFR28_04263	0.23	+0.6
4,865,843	-		PFR28_04263	0.23	+0.4
4,865,846	+		PFR28_04263	0.24	-1.9
4,865,846	+		PFR28_04263	0.24	-0.6
4,865,846	+		PFR28_04263	0.24	-1.4
4,865,847	-		PFR28_04263	0.24	-0.0
4,865,944	+		PFR28_04263	0.33	+1.4
4,865,945	-		PFR28_04263	0.34	-0.5
4,865,945	-		PFR28_04263	0.34	+0.1
4,866,031	+		PFR28_04263	0.42	-0.6
4,866,031	+		PFR28_04263	0.42	-0.7
4,866,031	+		PFR28_04263	0.42	-0.0
4,866,032	-		PFR28_04263	0.42	+1.0
4,866,032	-		PFR28_04263	0.42	+0.4
4,866,050	+		PFR28_04263	0.44	-0.6
4,866,050	+		PFR28_04263	0.44	-1.9
4,866,050	+		PFR28_04263	0.44	-0.7
4,866,050	+		PFR28_04263	0.44	+0.0
4,866,050	+		PFR28_04263	0.44	+0.6
4,866,050	+		PFR28_04263	0.44	+1.3
4,866,050	+		PFR28_04263	0.44	+0.3
4,866,050	+		PFR28_04263	0.44	-1.1
4,866,050	+		PFR28_04263	0.44	-0.2
4,866,051	-		PFR28_04263	0.44	+0.4
4,866,051	-		PFR28_04263	0.44	-0.5
4,866,051	-		PFR28_04263	0.44	-0.5
4,866,172	+		PFR28_04263	0.56	+0.4
4,866,173	-		PFR28_04263	0.56	+0.2
4,866,205	+		PFR28_04263	0.59	-0.0
4,866,205	+		PFR28_04263	0.59	+0.5
4,866,205	+		PFR28_04263	0.59	-1.0
4,866,205	+		PFR28_04263	0.59	+0.5
4,866,205	+		PFR28_04263	0.59	+1.1
4,866,205	+		PFR28_04263	0.59	-0.5
4,866,205	+		PFR28_04263	0.59	+0.7
4,866,206	-		PFR28_04263	0.60	+0.3
4,866,206	-		PFR28_04263	0.60	+0.3
4,866,206	-		PFR28_04263	0.60	-0.5
4,866,206	-		PFR28_04263	0.60	-3.4
4,866,361	+		PFR28_04263	0.75	+0.6
4,866,361	+		PFR28_04263	0.75	-1.6
4,866,362	-		PFR28_04263	0.75	+0.7
4,866,364	+		PFR28_04263	0.75	+1.2
4,866,365	-		PFR28_04263	0.75	-0.8
4,866,365	-		PFR28_04263	0.75	+0.1
4,866,365	-		PFR28_04263	0.75	-1.4
4,866,365	-		PFR28_04263	0.75	-0.0
4,866,446	+		PFR28_04263	0.83	-0.9
4,866,446	+		PFR28_04263	0.83	+0.2
4,866,446	+		PFR28_04263	0.83	-2.1
4,866,446	+		PFR28_04263	0.83	-0.5
4,866,446	+		PFR28_04263	0.83	-1.6
4,866,447	-		PFR28_04263	0.83	+0.8
4,866,447	-		PFR28_04263	0.83	-0.3
4,866,447	-		PFR28_04263	0.83	-0.5
4,866,447	-		PFR28_04263	0.83	-0.6
4,866,524	+				-0.1
4,866,524	+				+0.8
4,866,524	+				+0.6
4,866,524	+				+0.1
4,866,524	+				+1.4
4,866,524	+				-0.0
4,866,525	-				+1.4
4,866,525	-				-1.0
4,866,525	-				+0.7
4,866,525	-				+0.5
4,866,525	-				+0.6
4,866,525	-				+0.3
4,866,525	-				+0.1
4,866,525	-				+0.3
4,866,560	-				-1.4
4,866,562	+				-0.5
4,866,562	+				+1.1
4,866,562	+				-1.8
4,866,562	+				+0.4
4,866,563	-				-0.1
4,866,563	-				+0.5
4,866,563	-				-0.4
4,866,563	-				-2.3
4,866,563	-				+0.5
4,866,728	+				+0.0
4,866,728	+				+0.2
4,866,728	+				+0.1
4,866,728	+				-0.6
4,866,729	-				+0.8
4,866,729	-				+0.1
4,866,803	+		PFR28_04264	0.16	-4.0
4,866,804	-		PFR28_04264	0.16	-0.3
4,866,804	-		PFR28_04264	0.16	-0.6
4,866,804	-		PFR28_04264	0.16	-0.2
4,867,063	-		PFR28_04264	0.46	-1.1
4,867,163	+		PFR28_04264	0.58	-0.9
4,867,163	+		PFR28_04264	0.58	+0.6
4,867,163	+		PFR28_04264	0.58	-1.6
4,867,163	+		PFR28_04264	0.58	-1.4
4,867,164	-		PFR28_04264	0.58	-2.1
4,867,164	-		PFR28_04264	0.58	+0.5
4,867,164	-		PFR28_04264	0.58	-0.4
4,867,164	-		PFR28_04264	0.58	+0.6
4,867,164	-		PFR28_04264	0.58	+0.6
4,867,164	-		PFR28_04264	0.58	-0.1
4,867,217	+		PFR28_04264	0.64	-0.3
4,867,217	+		PFR28_04264	0.64	+2.0
4,867,217	+		PFR28_04264	0.64	-1.7
4,867,217	+		PFR28_04264	0.64	-1.1
4,867,218	-		PFR28_04264	0.64	+0.4
4,867,238	+		PFR28_04264	0.67	+0.4
4,867,238	+		PFR28_04264	0.67	+0.0
4,867,238	+		PFR28_04264	0.67	+0.6
4,867,238	+		PFR28_04264	0.67	+0.7
4,867,238	+		PFR28_04264	0.67	-1.5
4,867,238	+		PFR28_04264	0.67	-0.7
4,867,238	+		PFR28_04264	0.67	-0.6
4,867,238	+		PFR28_04264	0.67	+1.4
4,867,329	+		PFR28_04264	0.77	+0.2
4,867,329	+		PFR28_04264	0.77	+0.5
4,867,330	-		PFR28_04264	0.78	-1.4
4,867,330	-		PFR28_04264	0.78	-0.7
4,867,330	-		PFR28_04264	0.78	-0.6
4,867,330	-		PFR28_04264	0.78	-2.7
4,867,389	+		PFR28_04264	0.84	-0.5
4,867,403	+		PFR28_04264	0.86	-1.4
4,867,403	+		PFR28_04264	0.86	-1.3
4,867,404	-		PFR28_04264	0.86	+0.4
4,867,404	-		PFR28_04264	0.86	+1.6
4,867,407	+		PFR28_04264	0.87	-0.5
4,867,407	+		PFR28_04264	0.87	+0.6
4,867,407	+		PFR28_04264	0.87	+0.8
4,867,407	+		PFR28_04264	0.87	+0.3
4,867,407	+		PFR28_04264	0.87	+1.6
4,867,407	+		PFR28_04264	0.87	-0.3
4,867,407	+		PFR28_04264	0.87	+0.3
4,867,407	+		PFR28_04264	0.87	-1.4
4,867,407	+		PFR28_04264	0.87	+0.8
4,867,407	+		PFR28_04264	0.87	+2.0
4,867,407	+		PFR28_04264	0.87	-1.1
4,867,407	+		PFR28_04264	0.87	+1.2
4,867,407	+		PFR28_04264	0.87	-0.3
4,867,407	+		PFR28_04264	0.87	+0.0
4,867,407	+		PFR28_04264	0.87	-0.6
4,867,407	+		PFR28_04264	0.87	-0.1
4,867,407	+		PFR28_04264	0.87	+1.1
4,867,407	+		PFR28_04264	0.87	-1.0
4,867,408	-		PFR28_04264	0.87	+1.4
4,867,408	-		PFR28_04264	0.87	+0.6
4,867,408	-		PFR28_04264	0.87	+0.1
4,867,408	-		PFR28_04264	0.87	+0.4
4,867,408	-		PFR28_04264	0.87	+0.3
4,867,408	-		PFR28_04264	0.87	+0.5
4,867,408	-		PFR28_04264	0.87	-0.8
4,867,408	-		PFR28_04264	0.87	-1.2
4,867,408	-		PFR28_04264	0.87	+0.2
4,867,408	-		PFR28_04264	0.87	-0.2
4,867,408	-		PFR28_04264	0.87	+0.6
4,867,408	-		PFR28_04264	0.87	-0.1
4,867,408	-		PFR28_04264	0.87	+0.4
4,867,419	-		PFR28_04264	0.88	-0.7
4,867,533	+				+0.2
4,867,533	+				+0.9
4,867,533	+				+1.0
4,867,533	+				+0.2
4,867,534	-				+0.2
4,867,534	-				-0.9
4,867,534	-				-0.2
4,867,559	-				+1.2
4,867,559	-				-0.1
4,867,559	-				+0.8
4,867,594	+				-1.0
4,867,594	+				-0.8
4,867,594	+				-0.4
4,867,594	+				+0.2
4,867,594	+				-0.4
4,867,594	+				+0.4
4,867,594	+				+0.4
4,867,594	+				+3.2
4,867,594	+				+0.2
4,867,594	+				+0.7
4,867,594	+				-0.5
4,867,594	+				-0.9
4,867,594	+				-0.3
4,867,595	-				-0.6
4,867,595	-				-3.3
4,867,595	-				-2.7
4,867,595	-				-2.9
4,867,595	-				-0.9
4,867,595	-				-0.9
4,867,595	-				-2.2
4,867,595	-				+0.1
4,867,595	-				-0.1
4,867,595	-				+0.3
4,867,595	-				-0.4
4,867,595	-				-0.9
4,867,595	-				+0.3
4,867,595	-				+0.9
4,867,595	-				+0.1
4,867,595	-				+0.4
4,867,595	-				-0.4
4,867,595	-				-2.2
4,867,595	-				-1.2
4,867,595	-				-0.4
4,867,595	-				-0.8
4,867,595	-				+0.6
4,867,595	-				-2.2
4,867,597	+				+1.1
4,867,597	+				+0.4
4,867,597	+				+0.6
4,867,598	-				-0.4
4,867,598	-				-0.1
4,867,598	-				-1.0