Strain Fitness in Pseudomonas sp. RS175 around PFR28_03227

Experiment: L-Hydroxyproline carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Hydroxyproline carbon 10 mM
3,734,516	-				-0.8
3,734,571	+				-1.2
3,734,580	-				+1.1
3,734,723	+				+0.8
3,734,723	+				-2.1
3,734,723	+				+2.9
3,734,723	+				+0.6
3,734,723	+				-0.8
3,734,723	+				+1.6
3,734,723	+				-1.3
3,734,724	-				-0.5
3,734,724	-				-4.1
3,734,724	-				+0.2
3,734,724	-				+0.4
3,734,724	-				+0.6
3,734,725	+				-0.1
3,734,725	+				+0.4
3,734,725	+				+0.8
3,734,725	+				+1.2
3,734,726	-				+0.6
3,734,726	-				-0.0
3,734,726	-				-0.8
3,734,734	+				-1.9
3,734,734	+				+0.1
3,734,734	+				+0.9
3,734,735	-				-1.3
3,734,735	-				-0.4
3,734,735	-				+0.6
3,734,743	+				+1.0
3,734,743	+				+0.2
3,734,743	+				+0.1
3,734,743	+				+3.4
3,734,743	+				-0.0
3,734,744	-				-2.5
3,734,795	+		PFR28_03226	0.18	-0.9
3,734,795	+		PFR28_03226	0.18	-2.5
3,734,796	-		PFR28_03226	0.19	+0.3
3,734,796	-		PFR28_03226	0.19	+0.2
3,734,796	-		PFR28_03226	0.19	-0.6
3,734,796	-		PFR28_03226	0.19	+1.2
3,734,796	-		PFR28_03226	0.19	+0.6
3,734,796	-		PFR28_03226	0.19	-0.4
3,734,796	-		PFR28_03226	0.19	-0.3
3,734,796	-		PFR28_03226	0.19	-0.5
3,734,796	-		PFR28_03226	0.19	+0.2
3,734,807	-		PFR28_03226	0.21	+0.1
3,734,876	-		PFR28_03226	0.39	-0.6
3,734,883	+		PFR28_03226	0.40	-1.7
3,734,883	+		PFR28_03226	0.40	+0.8
3,734,883	+		PFR28_03226	0.40	+0.8
3,734,883	+		PFR28_03226	0.40	+0.0
3,734,883	+		PFR28_03226	0.40	-2.9
3,734,884	-		PFR28_03226	0.41	+0.4
3,734,884	-		PFR28_03226	0.41	+0.6
3,734,884	-		PFR28_03226	0.41	-0.2
3,734,884	-		PFR28_03226	0.41	+0.7
3,734,886	+		PFR28_03226	0.41	+0.2
3,734,886	+		PFR28_03226	0.41	-0.1
3,734,886	+		PFR28_03226	0.41	-0.1
3,734,886	+		PFR28_03226	0.41	+1.0
3,734,886	+		PFR28_03226	0.41	+1.6
3,734,886	+		PFR28_03226	0.41	+0.7
3,734,886	+		PFR28_03226	0.41	+0.3
3,734,886	+		PFR28_03226	0.41	+1.9
3,734,887	-		PFR28_03226	0.41	-0.5
3,734,887	-		PFR28_03226	0.41	+1.3
3,734,887	-		PFR28_03226	0.41	+0.1
3,734,887	-		PFR28_03226	0.41	-0.0
3,734,887	-		PFR28_03226	0.41	-0.7
3,734,903	+		PFR28_03226	0.45	-1.0
3,734,903	+		PFR28_03226	0.45	-0.8
3,734,903	+		PFR28_03226	0.45	-0.0
3,734,903	+		PFR28_03226	0.45	-0.3
3,734,903	+		PFR28_03226	0.45	-0.0
3,734,903	+		PFR28_03226	0.45	+0.4
3,734,903	+		PFR28_03226	0.45	+0.0
3,734,904	-		PFR28_03226	0.46	+0.7
3,734,904	-		PFR28_03226	0.46	-0.2
3,734,904	-		PFR28_03226	0.46	-1.1
3,734,904	-		PFR28_03226	0.46	-0.3
3,734,904	-		PFR28_03226	0.46	+0.4
3,734,904	-		PFR28_03226	0.46	-0.2
3,734,904	-		PFR28_03226	0.46	+1.0
3,734,904	-		PFR28_03226	0.46	+0.7
3,734,904	-		PFR28_03226	0.46	-0.2
3,734,908	-		PFR28_03226	0.47	+1.3
3,734,908	-		PFR28_03226	0.47	-2.3
3,734,946	+		PFR28_03226	0.56	-0.9
3,734,946	+		PFR28_03226	0.56	-0.0
3,734,946	+		PFR28_03226	0.56	+0.8
3,734,946	+		PFR28_03226	0.56	-1.9
3,734,946	+		PFR28_03226	0.56	+0.8
3,734,946	+		PFR28_03226	0.56	+1.6
3,734,947	-		PFR28_03226	0.56	-0.0
3,734,947	-		PFR28_03226	0.56	+0.3
3,734,952	+		PFR28_03226	0.58	+0.8
3,734,962	+		PFR28_03226	0.60	-0.0
3,734,962	+		PFR28_03226	0.60	-0.0
3,734,962	+		PFR28_03226	0.60	-1.1
3,734,962	+		PFR28_03226	0.60	+1.0
3,734,962	+		PFR28_03226	0.60	-2.6
3,734,963	-		PFR28_03226	0.60	+0.4
3,734,963	-		PFR28_03226	0.60	+0.7
3,734,963	-		PFR28_03226	0.60	-0.6
3,734,963	-		PFR28_03226	0.60	-0.4
3,734,963	-		PFR28_03226	0.60	+0.3
3,734,963	-		PFR28_03226	0.60	+2.1
3,734,963	-		PFR28_03226	0.60	+0.9
3,734,963	-		PFR28_03226	0.60	+1.1
3,734,963	-		PFR28_03226	0.60	-2.2
3,734,963	-		PFR28_03226	0.60	+0.4
3,734,963	-		PFR28_03226	0.60	-0.2
3,734,964	+		PFR28_03226	0.61	+1.3
3,735,000	+		PFR28_03226	0.70	+0.9
3,735,001	-		PFR28_03226	0.70	+0.2
3,735,002	+		PFR28_03226	0.70	-0.2
3,735,002	+		PFR28_03226	0.70	-0.4
3,735,002	+		PFR28_03226	0.70	-0.1
3,735,002	+		PFR28_03226	0.70	+0.3
3,735,003	-		PFR28_03226	0.70	+0.8
3,735,003	-		PFR28_03226	0.70	-3.0
3,735,003	-		PFR28_03226	0.70	-2.0
3,735,003	-		PFR28_03226	0.70	+1.6
3,735,003	-		PFR28_03226	0.70	-0.3
3,735,003	-		PFR28_03226	0.70	-0.4
3,735,003	-		PFR28_03226	0.70	-0.3
3,735,003	-		PFR28_03226	0.70	-2.1
3,735,003	-		PFR28_03226	0.70	-2.2
3,735,033	+		PFR28_03226	0.78	+0.3
3,735,082	+				-0.4
3,735,083	-				+1.1
3,735,083	-				+0.2
3,735,085	-				-2.9
3,735,136	+				-0.8
3,735,137	-				+0.3
3,735,137	-				+0.2
3,735,137	-				+0.3
3,735,137	-				-0.8
3,735,137	-				-1.3
3,735,137	-				+0.7
3,735,137	-				+0.2
3,735,140	+				+1.6
3,735,140	+				-1.2
3,735,140	+				-0.9
3,735,140	+				-1.2
3,735,140	+				+0.1
3,735,140	+				-0.8
3,735,140	+				+0.8
3,735,140	+				-0.0
3,735,141	-				+1.1
3,735,141	-				+0.5
3,735,141	-				-0.5
3,735,141	-				+1.3
3,735,141	-				+0.3
3,735,143	+				-2.6
3,735,143	+				+0.2
3,735,143	+				+1.1
3,735,143	+				-1.4
3,735,143	+				-1.8
3,735,144	-				+0.1
3,735,144	-				-0.8
3,735,144	-				+0.3
3,735,144	-				+1.1
3,735,221	+				+1.1
3,735,335	-				+0.3
3,735,382	-				-1.1
3,735,394	+				+0.6
3,735,394	+				+0.8
3,735,395	-				-0.8
3,735,481	+				-2.9
3,735,481	+				-3.9
3,735,534	+				-2.2
3,735,534	+				-5.1
3,735,534	+				-4.3
3,735,534	+				-2.4
3,735,534	+				-2.4
3,735,534	+				-1.1
3,735,535	-				-4.4
3,735,823	-		PFR28_03227	0.14	-3.1
3,735,823	-		PFR28_03227	0.14	-2.5
3,735,951	-		PFR28_03227	0.18	-3.0
3,735,951	-		PFR28_03227	0.18	-2.8
3,736,026	-		PFR28_03227	0.21	-3.3
3,736,026	-		PFR28_03227	0.21	-4.7
3,736,341	-		PFR28_03227	0.32	-5.8
3,736,413	+		PFR28_03227	0.35	-4.9
3,736,413	+		PFR28_03227	0.35	-3.6
3,736,414	-		PFR28_03227	0.35	-4.1
3,736,414	-		PFR28_03227	0.35	-1.6
3,736,414	-		PFR28_03227	0.35	-4.0
3,736,414	-		PFR28_03227	0.35	-4.1
3,736,807	+		PFR28_03227	0.49	-4.4
3,736,807	+		PFR28_03227	0.49	-3.7
3,736,808	-		PFR28_03227	0.49	-3.4
3,736,841	+		PFR28_03227	0.51	-4.7
3,737,124	-		PFR28_03227	0.61	-3.7
3,737,278	+		PFR28_03227	0.66	-4.8
3,737,278	+		PFR28_03227	0.66	-4.3
3,737,279	-		PFR28_03227	0.66	-4.1
3,737,279	-		PFR28_03227	0.66	-3.7
3,737,279	-		PFR28_03227	0.66	-5.6
3,737,307	+		PFR28_03227	0.68	-1.8
3,737,307	+		PFR28_03227	0.68	-3.2
3,737,308	-		PFR28_03227	0.68	-4.8
3,737,308	-		PFR28_03227	0.68	-5.2
3,737,547	+		PFR28_03227	0.76	-3.9
3,737,755	-		PFR28_03227	0.84	-3.5
3,737,794	+		PFR28_03227	0.85	-2.2
3,737,794	+		PFR28_03227	0.85	-2.0
3,737,795	-		PFR28_03227	0.85	-4.2
3,738,057	+				-2.1
3,738,058	-				-4.7
3,738,058	-				-3.9
3,738,212	-				+0.5
3,738,234	-				+0.5
3,738,234	-				+0.5
3,738,297	+				-0.9
3,738,297	+				+0.3
3,738,297	+				-0.1
3,738,297	+				+1.6
3,738,297	+				-1.6
3,738,297	+				+0.1
3,738,297	+				+0.2
3,738,298	-				+0.5
3,738,298	-				+0.3
3,738,298	-				+0.8
3,738,298	-				-0.9
3,738,298	-				+0.7
3,738,298	-				+0.3
3,738,501	+		PFR28_03228	0.24	-0.9
3,738,502	-		PFR28_03228	0.24	+0.5
3,738,565	-		PFR28_03228	0.30	-0.3
3,738,636	+		PFR28_03228	0.37	-0.7
3,738,636	+		PFR28_03228	0.37	-0.7
3,738,637	-		PFR28_03228	0.37	+0.5
3,738,828	+		PFR28_03228	0.57	+0.8
3,739,027	-		PFR28_03228	0.77	-0.4
3,739,027	-		PFR28_03228	0.77	-2.1
3,739,063	+		PFR28_03228	0.80	-0.2
3,739,063	+		PFR28_03228	0.80	+0.6
3,739,063	+		PFR28_03228	0.80	+0.4
3,739,063	+		PFR28_03228	0.80	+0.7
3,739,063	+		PFR28_03228	0.80	+0.1
3,739,063	+		PFR28_03228	0.80	+4.1
3,739,064	-		PFR28_03228	0.81	+1.6
3,739,064	-		PFR28_03228	0.81	-0.7
3,739,064	-		PFR28_03228	0.81	-0.7
3,739,064	-		PFR28_03228	0.81	-0.7
3,739,064	-		PFR28_03228	0.81	-1.2
3,739,064	-		PFR28_03228	0.81	-0.5
3,739,064	-		PFR28_03228	0.81	+0.3
3,739,064	-		PFR28_03228	0.81	+1.0
3,739,064	-		PFR28_03228	0.81	-2.2
3,739,064	-		PFR28_03228	0.81	+0.3