Strain Fitness in Pseudomonas sp. S08-1 around OH686_15760

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_15755 and OH686_15760 are separated by 362 nucleotidesOH686_15760 and OH686_15765 are separated by 81 nucleotides OH686_15755: OH686_15755 - Outer membrane vitamin B12 receptor BtuB, at 3,282,204 to 3,284,090 _15755 OH686_15760: OH686_15760 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,284,453 to 3,286,348 _15760 OH686_15765: OH686_15765 - Epoxide hydrolase , at 3,286,430 to 3,287,380 _15765 Position (kb) 3284 3285 3286 3287Strain fitness (log2 ratio) -2 -1 0 1 2at 3283.454 kb on - strand, within OH686_15755at 3283.573 kb on + strand, within OH686_15755at 3283.573 kb on + strand, within OH686_15755at 3283.660 kb on + strand, within OH686_15755at 3283.660 kb on + strand, within OH686_15755at 3283.660 kb on + strand, within OH686_15755at 3283.660 kb on + strand, within OH686_15755at 3283.660 kb on + strand, within OH686_15755at 3283.661 kb on - strand, within OH686_15755at 3283.810 kb on + strand, within OH686_15755at 3283.810 kb on + strand, within OH686_15755at 3283.810 kb on + strand, within OH686_15755at 3283.810 kb on + strand, within OH686_15755at 3283.811 kb on - strand, within OH686_15755at 3283.811 kb on - strand, within OH686_15755at 3283.811 kb on - strand, within OH686_15755at 3283.811 kb on - strand, within OH686_15755at 3283.811 kb on - strand, within OH686_15755at 3283.811 kb on - strand, within OH686_15755at 3283.860 kb on + strand, within OH686_15755at 3283.860 kb on + strand, within OH686_15755at 3283.861 kb on - strand, within OH686_15755at 3283.872 kb on + strand, within OH686_15755at 3283.872 kb on + strand, within OH686_15755at 3283.872 kb on + strand, within OH686_15755at 3283.873 kb on - strand, within OH686_15755at 3283.873 kb on - strand, within OH686_15755at 3283.873 kb on - strand, within OH686_15755at 3284.282 kb on + strandat 3284.339 kb on + strandat 3284.396 kb on + strandat 3284.396 kb on + strandat 3284.396 kb on + strandat 3284.396 kb on + strandat 3284.396 kb on + strandat 3284.396 kb on + strandat 3284.396 kb on + strandat 3284.396 kb on + strandat 3284.397 kb on - strandat 3284.397 kb on - strandat 3284.416 kb on + strandat 3284.416 kb on + strandat 3286.363 kb on + strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.364 kb on - strandat 3286.369 kb on + strandat 3286.369 kb on + strandat 3286.369 kb on + strandat 3286.369 kb on + strandat 3286.370 kb on - strandat 3286.370 kb on - strandat 3286.370 kb on - strandat 3286.370 kb on - strandat 3286.370 kb on - strandat 3286.370 kb on - strandat 3286.370 kb on - strandat 3286.370 kb on - strandat 3286.388 kb on + strandat 3286.388 kb on + strandat 3286.389 kb on - strandat 3286.443 kb on + strandat 3286.443 kb on + strandat 3286.444 kb on - strandat 3286.737 kb on + strand, within OH686_15765at 3286.737 kb on + strand, within OH686_15765at 3286.738 kb on - strand, within OH686_15765at 3286.920 kb on + strand, within OH686_15765at 3286.920 kb on + strand, within OH686_15765at 3286.921 kb on - strand, within OH686_15765at 3286.921 kb on - strand, within OH686_15765at 3286.921 kb on - strand, within OH686_15765at 3286.929 kb on + strand, within OH686_15765at 3286.929 kb on + strand, within OH686_15765at 3286.929 kb on + strand, within OH686_15765at 3286.929 kb on + strand, within OH686_15765at 3286.929 kb on + strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.930 kb on - strand, within OH686_15765at 3286.947 kb on + strand, within OH686_15765at 3286.947 kb on + strand, within OH686_15765at 3286.947 kb on + strand, within OH686_15765at 3286.947 kb on + strand, within OH686_15765at 3286.948 kb on - strand, within OH686_15765at 3286.948 kb on - strand, within OH686_15765at 3286.948 kb on - strand, within OH686_15765at 3287.157 kb on + strand, within OH686_15765at 3287.158 kb on - strand, within OH686_15765at 3287.158 kb on - strand, within OH686_15765at 3287.265 kb on + strand, within OH686_15765at 3287.266 kb on - strand, within OH686_15765at 3287.266 kb on - strand, within OH686_15765at 3287.328 kb on + strandat 3287.328 kb on + strandat 3287.328 kb on + strandat 3287.328 kb on + strandat 3287.329 kb on - strandat 3287.329 kb on - strandat 3287.329 kb on - strandat 3287.329 kb on - strandat 3287.329 kb on - strandat 3287.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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3,283,454 - OH686_15755 0.66 +0.1
3,283,573 + OH686_15755 0.73 +0.1
3,283,573 + OH686_15755 0.73 +0.4
3,283,660 + OH686_15755 0.77 +0.1
3,283,660 + OH686_15755 0.77 -0.8
3,283,660 + OH686_15755 0.77 +0.3
3,283,660 + OH686_15755 0.77 +0.4
3,283,660 + OH686_15755 0.77 +0.7
3,283,661 - OH686_15755 0.77 -0.7
3,283,810 + OH686_15755 0.85 -0.4
3,283,810 + OH686_15755 0.85 +0.1
3,283,810 + OH686_15755 0.85 -0.8
3,283,810 + OH686_15755 0.85 -1.8
3,283,811 - OH686_15755 0.85 -0.2
3,283,811 - OH686_15755 0.85 -0.8
3,283,811 - OH686_15755 0.85 -0.3
3,283,811 - OH686_15755 0.85 -1.0
3,283,811 - OH686_15755 0.85 -0.3
3,283,811 - OH686_15755 0.85 -0.3
3,283,860 + OH686_15755 0.88 -0.8
3,283,860 + OH686_15755 0.88 -0.8
3,283,861 - OH686_15755 0.88 +0.0
3,283,872 + OH686_15755 0.88 +0.4
3,283,872 + OH686_15755 0.88 +0.1
3,283,872 + OH686_15755 0.88 -0.6
3,283,873 - OH686_15755 0.88 +0.9
3,283,873 - OH686_15755 0.88 +0.1
3,283,873 - OH686_15755 0.88 -0.4
3,284,282 + -0.1
3,284,339 + +0.5
3,284,396 + -0.4
3,284,396 + -0.2
3,284,396 + -0.2
3,284,396 + -0.6
3,284,396 + -0.5
3,284,396 + +0.2
3,284,396 + -0.6
3,284,396 + +0.4
3,284,397 - +0.4
3,284,397 - -1.6
3,284,416 + -1.2
3,284,416 + +0.0
3,286,363 + -0.8
3,286,364 - -0.3
3,286,364 - +0.4
3,286,364 - -0.7
3,286,364 - +2.2
3,286,364 - +0.2
3,286,364 - -0.1
3,286,364 - -0.2
3,286,364 - +0.3
3,286,364 - -0.4
3,286,364 - -0.8
3,286,369 + -0.7
3,286,369 + -1.4
3,286,369 + -1.0
3,286,369 + -0.8
3,286,370 - -0.4
3,286,370 - -1.0
3,286,370 - +0.2
3,286,370 - -0.9
3,286,370 - -0.2
3,286,370 - +0.2
3,286,370 - -1.0
3,286,370 - +0.0
3,286,388 + -1.6
3,286,388 + +0.8
3,286,389 - +0.1
3,286,443 + -0.2
3,286,443 + -0.9
3,286,444 - -1.4
3,286,737 + OH686_15765 0.32 +0.2
3,286,737 + OH686_15765 0.32 +1.1
3,286,738 - OH686_15765 0.32 -0.0
3,286,920 + OH686_15765 0.52 +0.5
3,286,920 + OH686_15765 0.52 -0.0
3,286,921 - OH686_15765 0.52 +0.1
3,286,921 - OH686_15765 0.52 -0.4
3,286,921 - OH686_15765 0.52 -0.4
3,286,929 + OH686_15765 0.52 -0.4
3,286,929 + OH686_15765 0.52 +0.3
3,286,929 + OH686_15765 0.52 +1.0
3,286,929 + OH686_15765 0.52 -0.7
3,286,929 + OH686_15765 0.52 +0.1
3,286,930 - OH686_15765 0.53 +0.8
3,286,930 - OH686_15765 0.53 +0.1
3,286,930 - OH686_15765 0.53 -1.6
3,286,930 - OH686_15765 0.53 +0.9
3,286,930 - OH686_15765 0.53 -1.3
3,286,930 - OH686_15765 0.53 -0.4
3,286,930 - OH686_15765 0.53 +0.5
3,286,930 - OH686_15765 0.53 +0.1
3,286,930 - OH686_15765 0.53 -1.0
3,286,947 + OH686_15765 0.54 +0.4
3,286,947 + OH686_15765 0.54 -0.1
3,286,947 + OH686_15765 0.54 -0.9
3,286,947 + OH686_15765 0.54 +0.3
3,286,948 - OH686_15765 0.54 +0.3
3,286,948 - OH686_15765 0.54 -0.4
3,286,948 - OH686_15765 0.54 +0.7
3,287,157 + OH686_15765 0.76 -0.6
3,287,158 - OH686_15765 0.77 +0.2
3,287,158 - OH686_15765 0.77 -0.8
3,287,265 + OH686_15765 0.88 -1.0
3,287,266 - OH686_15765 0.88 +0.0
3,287,266 - OH686_15765 0.88 +0.5
3,287,328 + +0.4
3,287,328 + -0.5
3,287,328 + +0.0
3,287,328 + -0.5
3,287,329 - -0.1
3,287,329 - -0.3
3,287,329 - -0.6
3,287,329 - +0.2
3,287,329 - -0.5
3,287,329 - +0.2

Or see this region's nucleotide sequence