Strain Fitness in Pseudomonas sp. S08-1 around OH686_15745

Experiment: Sorgoleone (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_15735 and OH686_15740 are separated by 122 nucleotidesOH686_15740 and OH686_15745 overlap by 4 nucleotidesOH686_15745 and OH686_15750 overlap by 8 nucleotidesOH686_15750 and OH686_15755 are separated by 63 nucleotides OH686_15735: OH686_15735 - Aspartyl protease, at 3,279,544 to 3,280,197 _15735 OH686_15740: OH686_15740 - GTP cyclohydrolase II , at 3,280,320 to 3,280,931 _15740 OH686_15745: OH686_15745 - Uncharacterized MFS-type transporter, at 3,280,928 to 3,281,347 _15745 OH686_15750: OH686_15750 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 3,281,340 to 3,282,140 _15750 OH686_15755: OH686_15755 - Outer membrane vitamin B12 receptor BtuB, at 3,282,204 to 3,284,090 _15755 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -1 0 1 2at 3280.195 kb on + strandat 3280.195 kb on + strandat 3280.195 kb on + strandat 3280.195 kb on + strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.196 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3280.277 kb on - strandat 3281.117 kb on + strand, within OH686_15745at 3281.117 kb on + strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.118 kb on - strand, within OH686_15745at 3281.345 kb on + strandat 3281.532 kb on + strand, within OH686_15750at 3281.587 kb on + strand, within OH686_15750at 3281.587 kb on + strand, within OH686_15750at 3281.587 kb on + strand, within OH686_15750at 3281.649 kb on + strand, within OH686_15750at 3281.649 kb on + strand, within OH686_15750at 3281.649 kb on + strand, within OH686_15750at 3281.649 kb on + strand, within OH686_15750at 3281.649 kb on + strand, within OH686_15750at 3281.650 kb on - strand, within OH686_15750at 3281.650 kb on - strand, within OH686_15750at 3281.650 kb on - strand, within OH686_15750at 3281.650 kb on - strand, within OH686_15750at 3281.650 kb on - strand, within OH686_15750at 3281.650 kb on - strand, within OH686_15750at 3281.814 kb on + strand, within OH686_15750at 3281.814 kb on + strand, within OH686_15750at 3281.814 kb on + strand, within OH686_15750at 3281.815 kb on - strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.838 kb on + strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.839 kb on - strand, within OH686_15750at 3281.840 kb on + strand, within OH686_15750at 3281.840 kb on + strand, within OH686_15750at 3281.840 kb on + strand, within OH686_15750at 3281.841 kb on - strand, within OH686_15750at 3281.841 kb on - strand, within OH686_15750at 3281.841 kb on - strand, within OH686_15750at 3281.841 kb on - strand, within OH686_15750at 3281.971 kb on + strand, within OH686_15750at 3281.971 kb on + strand, within OH686_15750at 3281.971 kb on + strand, within OH686_15750at 3281.972 kb on - strand, within OH686_15750at 3281.972 kb on - strand, within OH686_15750at 3281.972 kb on - strand, within OH686_15750at 3282.205 kb on + strandat 3282.205 kb on + strandat 3282.205 kb on + strandat 3282.205 kb on + strandat 3282.206 kb on - strandat 3282.206 kb on - strandat 3282.265 kb on + strandat 3282.265 kb on + strandat 3282.265 kb on + strandat 3282.286 kb on + strandat 3282.286 kb on + strandat 3282.286 kb on + strandat 3282.286 kb on + strandat 3282.287 kb on - strandat 3282.287 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
remove
3,280,195 + -0.8
3,280,195 + +0.6
3,280,195 + +0.5
3,280,195 + +0.9
3,280,196 - -0.9
3,280,196 - +0.2
3,280,196 - -1.0
3,280,196 - +0.2
3,280,196 - +0.9
3,280,196 - -0.6
3,280,196 - -0.4
3,280,277 - +1.0
3,280,277 - +0.5
3,280,277 - -1.3
3,280,277 - +1.2
3,280,277 - -0.0
3,281,117 + OH686_15745 0.45 +0.2
3,281,117 + OH686_15745 0.45 -0.3
3,281,118 - OH686_15745 0.45 +0.4
3,281,118 - OH686_15745 0.45 +0.5
3,281,118 - OH686_15745 0.45 +0.0
3,281,118 - OH686_15745 0.45 -0.1
3,281,118 - OH686_15745 0.45 -0.9
3,281,345 + -0.9
3,281,532 + OH686_15750 0.24 +0.7
3,281,587 + OH686_15750 0.31 -0.6
3,281,587 + OH686_15750 0.31 +0.4
3,281,587 + OH686_15750 0.31 -0.3
3,281,649 + OH686_15750 0.39 -0.3
3,281,649 + OH686_15750 0.39 -0.8
3,281,649 + OH686_15750 0.39 -0.2
3,281,649 + OH686_15750 0.39 +0.0
3,281,649 + OH686_15750 0.39 -1.0
3,281,650 - OH686_15750 0.39 +0.5
3,281,650 - OH686_15750 0.39 +0.2
3,281,650 - OH686_15750 0.39 -0.2
3,281,650 - OH686_15750 0.39 -0.4
3,281,650 - OH686_15750 0.39 +0.0
3,281,650 - OH686_15750 0.39 +1.0
3,281,814 + OH686_15750 0.59 -1.2
3,281,814 + OH686_15750 0.59 -0.9
3,281,814 + OH686_15750 0.59 +0.3
3,281,815 - OH686_15750 0.59 +0.1
3,281,838 + OH686_15750 0.62 +0.1
3,281,838 + OH686_15750 0.62 -0.8
3,281,838 + OH686_15750 0.62 -0.2
3,281,838 + OH686_15750 0.62 -0.2
3,281,838 + OH686_15750 0.62 -0.2
3,281,838 + OH686_15750 0.62 +0.3
3,281,838 + OH686_15750 0.62 -0.4
3,281,838 + OH686_15750 0.62 -0.4
3,281,839 - OH686_15750 0.62 -0.6
3,281,839 - OH686_15750 0.62 +0.9
3,281,839 - OH686_15750 0.62 -0.8
3,281,839 - OH686_15750 0.62 -0.0
3,281,839 - OH686_15750 0.62 -0.5
3,281,839 - OH686_15750 0.62 +0.2
3,281,839 - OH686_15750 0.62 +0.3
3,281,839 - OH686_15750 0.62 +1.2
3,281,840 + OH686_15750 0.62 +1.3
3,281,840 + OH686_15750 0.62 -0.8
3,281,840 + OH686_15750 0.62 +0.0
3,281,841 - OH686_15750 0.63 -0.2
3,281,841 - OH686_15750 0.63 -0.2
3,281,841 - OH686_15750 0.63 -0.2
3,281,841 - OH686_15750 0.63 +0.3
3,281,971 + OH686_15750 0.79 -0.2
3,281,971 + OH686_15750 0.79 +0.5
3,281,971 + OH686_15750 0.79 +1.1
3,281,972 - OH686_15750 0.79 -0.3
3,281,972 - OH686_15750 0.79 +1.8
3,281,972 - OH686_15750 0.79 -0.6
3,282,205 + -0.2
3,282,205 + -1.0
3,282,205 + +0.4
3,282,205 + -1.5
3,282,206 - +0.3
3,282,206 - -0.2
3,282,265 + -0.4
3,282,265 + +1.6
3,282,265 + +0.4
3,282,286 + +0.1
3,282,286 + +0.3
3,282,286 + -0.1
3,282,286 + -0.3
3,282,287 - -0.9
3,282,287 - -0.5

Or see this region's nucleotide sequence