Strain Fitness in Pseudomonas sp. S08-1 around OH686_09515

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09505 and OH686_09510 are separated by 38 nucleotidesOH686_09510 and OH686_09515 are separated by 88 nucleotidesOH686_09515 and OH686_09520 are separated by 42 nucleotides OH686_09505: OH686_09505 - 3'-to-5' oligoribonuclease (orn), at 1,940,479 to 1,941,024 _09505 OH686_09510: OH686_09510 - hypothetical protein, at 1,941,063 to 1,941,833 _09510 OH686_09515: OH686_09515 - ribosome small subunit-dependent GTPase A, at 1,941,922 to 1,942,953 _09515 OH686_09520: OH686_09520 - Flagellar motor rotation protein MotB, at 1,942,996 to 1,944,036 _09520 Position (kb) 1941 1942 1943Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1941.040 kb on + strandat 1941.040 kb on + strandat 1941.040 kb on + strandat 1941.040 kb on + strandat 1941.040 kb on + strandat 1941.041 kb on - strandat 1941.041 kb on - strandat 1941.041 kb on - strandat 1941.041 kb on - strandat 1941.041 kb on - strandat 1941.041 kb on - strandat 1941.041 kb on - strandat 1941.041 kb on - strandat 1941.057 kb on - strandat 1941.149 kb on + strand, within OH686_09510at 1941.149 kb on + strand, within OH686_09510at 1941.149 kb on + strand, within OH686_09510at 1941.149 kb on + strand, within OH686_09510at 1941.149 kb on + strand, within OH686_09510at 1941.149 kb on + strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.150 kb on - strand, within OH686_09510at 1941.201 kb on + strand, within OH686_09510at 1941.201 kb on + strand, within OH686_09510at 1941.201 kb on + strand, within OH686_09510at 1941.202 kb on - strand, within OH686_09510at 1941.202 kb on - strand, within OH686_09510at 1941.202 kb on - strand, within OH686_09510at 1941.235 kb on + strand, within OH686_09510at 1941.235 kb on + strand, within OH686_09510at 1941.235 kb on + strand, within OH686_09510at 1941.235 kb on + strand, within OH686_09510at 1941.235 kb on + strand, within OH686_09510at 1941.235 kb on + strand, within OH686_09510at 1941.236 kb on - strand, within OH686_09510at 1941.236 kb on - strand, within OH686_09510at 1941.236 kb on - strand, within OH686_09510at 1941.236 kb on - strand, within OH686_09510at 1941.236 kb on - strand, within OH686_09510at 1941.236 kb on - strand, within OH686_09510at 1941.247 kb on + strand, within OH686_09510at 1941.248 kb on - strand, within OH686_09510at 1941.248 kb on - strand, within OH686_09510at 1941.248 kb on - strand, within OH686_09510at 1941.499 kb on + strand, within OH686_09510at 1941.499 kb on + strand, within OH686_09510at 1941.499 kb on + strand, within OH686_09510at 1941.500 kb on - strand, within OH686_09510at 1941.500 kb on - strand, within OH686_09510at 1941.709 kb on - strand, within OH686_09510at 1941.845 kb on + strandat 1941.846 kb on - strandat 1941.846 kb on - strandat 1941.885 kb on + strandat 1941.885 kb on + strandat 1941.885 kb on + strandat 1941.885 kb on + strandat 1941.886 kb on - strandat 1941.886 kb on - strandat 1941.886 kb on - strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.905 kb on + strandat 1941.906 kb on - strandat 1941.906 kb on - strandat 1941.906 kb on - strandat 1941.906 kb on - strandat 1941.906 kb on - strandat 1941.906 kb on - strandat 1941.906 kb on - strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.907 kb on + strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.908 kb on - strandat 1941.909 kb on + strandat 1941.909 kb on + strandat 1941.909 kb on + strandat 1941.910 kb on - strandat 1941.910 kb on - strandat 1941.910 kb on - strandat 1941.910 kb on - strandat 1941.910 kb on - strandat 1941.910 kb on - strandat 1942.949 kb on - strandat 1942.949 kb on - strandat 1942.949 kb on - strandat 1942.949 kb on - strandat 1942.954 kb on + strandat 1942.954 kb on + strandat 1942.954 kb on + strandat 1942.954 kb on + strandat 1943.273 kb on + strand, within OH686_09520at 1943.273 kb on + strand, within OH686_09520at 1943.274 kb on - strand, within OH686_09520at 1943.274 kb on - strand, within OH686_09520at 1943.274 kb on - strand, within OH686_09520at 1943.325 kb on + strand, within OH686_09520at 1943.325 kb on + strand, within OH686_09520at 1943.325 kb on + strand, within OH686_09520at 1943.326 kb on - strand, within OH686_09520at 1943.326 kb on - strand, within OH686_09520at 1943.368 kb on - strand, within OH686_09520at 1943.407 kb on - strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.934 kb on + strandat 1943.935 kb on - strandat 1943.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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1,941,040 + -0.3
1,941,040 + +0.7
1,941,040 + -0.1
1,941,040 + +0.3
1,941,040 + -0.2
1,941,041 - -0.4
1,941,041 - -0.4
1,941,041 - +0.3
1,941,041 - +0.7
1,941,041 - -0.4
1,941,041 - -0.0
1,941,041 - +0.8
1,941,041 - -0.1
1,941,057 - -0.5
1,941,149 + OH686_09510 0.11 -0.2
1,941,149 + OH686_09510 0.11 -0.1
1,941,149 + OH686_09510 0.11 +0.5
1,941,149 + OH686_09510 0.11 -0.7
1,941,149 + OH686_09510 0.11 +0.3
1,941,149 + OH686_09510 0.11 -0.1
1,941,150 - OH686_09510 0.11 -0.7
1,941,150 - OH686_09510 0.11 +1.1
1,941,150 - OH686_09510 0.11 -0.4
1,941,150 - OH686_09510 0.11 -0.1
1,941,150 - OH686_09510 0.11 -0.0
1,941,150 - OH686_09510 0.11 +0.6
1,941,150 - OH686_09510 0.11 -0.3
1,941,150 - OH686_09510 0.11 +1.0
1,941,150 - OH686_09510 0.11 +0.3
1,941,150 - OH686_09510 0.11 -0.5
1,941,150 - OH686_09510 0.11 +0.3
1,941,150 - OH686_09510 0.11 -0.6
1,941,201 + OH686_09510 0.18 +0.1
1,941,201 + OH686_09510 0.18 -0.1
1,941,201 + OH686_09510 0.18 -0.2
1,941,202 - OH686_09510 0.18 -0.3
1,941,202 - OH686_09510 0.18 -0.0
1,941,202 - OH686_09510 0.18 +1.4
1,941,235 + OH686_09510 0.22 +0.2
1,941,235 + OH686_09510 0.22 -0.7
1,941,235 + OH686_09510 0.22 +0.1
1,941,235 + OH686_09510 0.22 -2.5
1,941,235 + OH686_09510 0.22 +0.9
1,941,235 + OH686_09510 0.22 +0.1
1,941,236 - OH686_09510 0.22 -0.1
1,941,236 - OH686_09510 0.22 +0.3
1,941,236 - OH686_09510 0.22 -0.3
1,941,236 - OH686_09510 0.22 +1.3
1,941,236 - OH686_09510 0.22 -0.2
1,941,236 - OH686_09510 0.22 -0.0
1,941,247 + OH686_09510 0.24 -0.3
1,941,248 - OH686_09510 0.24 -0.0
1,941,248 - OH686_09510 0.24 -0.5
1,941,248 - OH686_09510 0.24 +0.2
1,941,499 + OH686_09510 0.57 -0.2
1,941,499 + OH686_09510 0.57 +0.2
1,941,499 + OH686_09510 0.57 -0.7
1,941,500 - OH686_09510 0.57 +0.5
1,941,500 - OH686_09510 0.57 -0.5
1,941,709 - OH686_09510 0.84 -0.5
1,941,845 + +0.4
1,941,846 - +1.0
1,941,846 - +0.6
1,941,885 + +0.4
1,941,885 + +0.1
1,941,885 + -0.5
1,941,885 + +0.8
1,941,886 - +0.9
1,941,886 - -1.0
1,941,886 - +0.6
1,941,905 + -0.1
1,941,905 + -0.4
1,941,905 + -0.2
1,941,905 + -3.0
1,941,905 + +0.1
1,941,905 + +0.2
1,941,905 + +0.1
1,941,905 + +1.8
1,941,905 + +0.3
1,941,905 + -0.7
1,941,905 + +1.1
1,941,905 + +0.3
1,941,905 + -0.4
1,941,906 - +0.1
1,941,906 - +1.4
1,941,906 - +0.8
1,941,906 - +0.5
1,941,906 - +1.7
1,941,906 - +0.6
1,941,906 - +0.3
1,941,907 + +0.1
1,941,907 + -0.8
1,941,907 + -0.0
1,941,907 + -0.6
1,941,907 + +0.5
1,941,907 + +0.8
1,941,907 + +0.2
1,941,907 + +0.2
1,941,907 + +0.4
1,941,907 + +0.1
1,941,907 + +1.0
1,941,907 + +0.2
1,941,907 + -0.5
1,941,907 + -0.9
1,941,907 + -0.1
1,941,907 + -0.6
1,941,907 + -0.2
1,941,907 + +0.6
1,941,908 - -0.3
1,941,908 - -1.1
1,941,908 - -0.2
1,941,908 - -0.3
1,941,908 - -1.4
1,941,908 - -0.5
1,941,908 - -0.1
1,941,908 - -0.3
1,941,908 - -0.9
1,941,908 - +0.4
1,941,908 - +0.1
1,941,908 - -0.0
1,941,908 - -0.8
1,941,908 - +0.4
1,941,908 - +0.1
1,941,908 - -0.0
1,941,908 - +0.7
1,941,909 + +0.1
1,941,909 + +0.0
1,941,909 + +1.3
1,941,910 - -0.1
1,941,910 - +0.5
1,941,910 - +0.4
1,941,910 - +0.4
1,941,910 - +0.5
1,941,910 - -0.5
1,942,949 - +0.4
1,942,949 - -0.4
1,942,949 - +1.4
1,942,949 - +0.1
1,942,954 + -0.9
1,942,954 + -0.5
1,942,954 + -1.7
1,942,954 + +0.8
1,943,273 + OH686_09520 0.27 -0.4
1,943,273 + OH686_09520 0.27 -0.9
1,943,274 - OH686_09520 0.27 -0.4
1,943,274 - OH686_09520 0.27 -2.4
1,943,274 - OH686_09520 0.27 -1.2
1,943,325 + OH686_09520 0.32 -0.7
1,943,325 + OH686_09520 0.32 -0.6
1,943,325 + OH686_09520 0.32 -1.3
1,943,326 - OH686_09520 0.32 -0.4
1,943,326 - OH686_09520 0.32 +0.5
1,943,368 - OH686_09520 0.36 -0.6
1,943,407 - OH686_09520 0.39 -1.3
1,943,480 + OH686_09520 0.46 -0.8
1,943,480 + OH686_09520 0.46 -0.7
1,943,480 + OH686_09520 0.46 -1.1
1,943,480 + OH686_09520 0.46 +1.0
1,943,481 - OH686_09520 0.47 -0.3
1,943,481 - OH686_09520 0.47 -0.7
1,943,481 - OH686_09520 0.47 +0.8
1,943,481 - OH686_09520 0.47 -0.7
1,943,481 - OH686_09520 0.47 -1.1
1,943,481 - OH686_09520 0.47 +0.2
1,943,481 - OH686_09520 0.47 +0.5
1,943,819 + OH686_09520 0.79 -0.8
1,943,819 + OH686_09520 0.79 +0.4
1,943,819 + OH686_09520 0.79 +0.4
1,943,819 + OH686_09520 0.79 -0.4
1,943,819 + OH686_09520 0.79 -0.4
1,943,819 + OH686_09520 0.79 +0.4
1,943,819 + OH686_09520 0.79 -1.4
1,943,819 + OH686_09520 0.79 -0.5
1,943,819 + OH686_09520 0.79 -0.1
1,943,819 + OH686_09520 0.79 -0.6
1,943,820 - OH686_09520 0.79 -0.8
1,943,820 - OH686_09520 0.79 -0.2
1,943,820 - OH686_09520 0.79 -0.1
1,943,820 - OH686_09520 0.79 -0.3
1,943,820 - OH686_09520 0.79 -0.3
1,943,820 - OH686_09520 0.79 -0.3
1,943,820 - OH686_09520 0.79 -0.2
1,943,820 - OH686_09520 0.79 -0.3
1,943,820 - OH686_09520 0.79 -0.3
1,943,820 - OH686_09520 0.79 -2.9
1,943,820 - OH686_09520 0.79 -0.7
1,943,820 - OH686_09520 0.79 -0.4
1,943,917 + OH686_09520 0.88 -0.3
1,943,917 + OH686_09520 0.88 +0.7
1,943,917 + OH686_09520 0.88 -1.2
1,943,917 + OH686_09520 0.88 +0.1
1,943,934 + -0.1
1,943,935 - -0.6
1,943,935 - +1.5

Or see this region's nucleotide sequence