Strain Fitness in Pseudomonas sp. S08-1 around OH686_09100

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09095 and OH686_09100 are separated by 385 nucleotidesOH686_09100 and OH686_09105 are separated by 81 nucleotides OH686_09095: OH686_09095 - hypothetical protein, at 1,857,093 to 1,858,454 _09095 OH686_09100: OH686_09100 - hypothetical protein, at 1,858,840 to 1,859,394 _09100 OH686_09105: OH686_09105 - Acyl-CoA dehydrogenase 2 [fadN-fadA-fadE operon] , at 1,859,476 to 1,861,254 _09105 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1857.862 kb on - strand, within OH686_09095at 1857.863 kb on + strand, within OH686_09095at 1857.864 kb on - strand, within OH686_09095at 1857.864 kb on - strand, within OH686_09095at 1857.867 kb on - strand, within OH686_09095at 1857.926 kb on + strand, within OH686_09095at 1857.950 kb on + strand, within OH686_09095at 1857.951 kb on - strand, within OH686_09095at 1857.951 kb on - strand, within OH686_09095at 1858.063 kb on - strand, within OH686_09095at 1858.065 kb on - strand, within OH686_09095at 1858.189 kb on - strand, within OH686_09095at 1858.190 kb on + strand, within OH686_09095at 1858.192 kb on + strand, within OH686_09095at 1858.192 kb on + strand, within OH686_09095at 1858.231 kb on - strand, within OH686_09095at 1858.258 kb on + strand, within OH686_09095at 1858.259 kb on - strand, within OH686_09095at 1858.271 kb on + strand, within OH686_09095at 1858.272 kb on - strand, within OH686_09095at 1858.284 kb on + strand, within OH686_09095at 1858.284 kb on + strand, within OH686_09095at 1858.285 kb on - strand, within OH686_09095at 1858.297 kb on + strand, within OH686_09095at 1858.297 kb on + strand, within OH686_09095at 1858.298 kb on - strand, within OH686_09095at 1858.306 kb on + strand, within OH686_09095at 1858.330 kb on + strandat 1858.330 kb on + strandat 1858.330 kb on + strandat 1858.396 kb on + strandat 1858.459 kb on - strandat 1858.477 kb on + strandat 1858.526 kb on + strandat 1858.638 kb on + strandat 1858.654 kb on - strandat 1858.715 kb on - strandat 1858.751 kb on + strandat 1858.763 kb on + strandat 1858.763 kb on + strandat 1858.764 kb on - strandat 1858.791 kb on - strandat 1858.794 kb on - strandat 1858.800 kb on + strandat 1858.800 kb on + strandat 1858.801 kb on - strandat 1858.821 kb on + strandat 1858.821 kb on + strandat 1858.821 kb on + strandat 1858.857 kb on - strandat 1858.857 kb on - strandat 1858.922 kb on + strand, within OH686_09100at 1858.922 kb on + strand, within OH686_09100at 1858.923 kb on - strand, within OH686_09100at 1858.923 kb on - strand, within OH686_09100at 1858.939 kb on + strand, within OH686_09100at 1858.940 kb on - strand, within OH686_09100at 1858.979 kb on + strand, within OH686_09100at 1858.980 kb on - strand, within OH686_09100at 1858.993 kb on + strand, within OH686_09100at 1858.994 kb on - strand, within OH686_09100at 1859.058 kb on - strand, within OH686_09100at 1859.128 kb on + strand, within OH686_09100at 1859.128 kb on + strand, within OH686_09100at 1859.128 kb on + strand, within OH686_09100at 1859.128 kb on + strand, within OH686_09100at 1859.280 kb on - strand, within OH686_09100at 1859.280 kb on - strand, within OH686_09100at 1859.280 kb on - strand, within OH686_09100at 1859.307 kb on + strand, within OH686_09100at 1859.307 kb on + strand, within OH686_09100at 1859.308 kb on - strand, within OH686_09100at 1859.343 kb on + strandat 1859.344 kb on - strandat 1859.354 kb on + strandat 1859.354 kb on + strandat 1859.354 kb on + strandat 1859.354 kb on + strandat 1859.354 kb on + strandat 1859.354 kb on + strandat 1859.355 kb on - strandat 1859.355 kb on - strandat 1859.357 kb on + strandat 1859.357 kb on + strandat 1859.357 kb on + strandat 1859.358 kb on - strandat 1859.358 kb on - strandat 1859.358 kb on - strandat 1859.361 kb on + strandat 1859.361 kb on + strandat 1859.362 kb on - strandat 1859.362 kb on - strandat 1859.362 kb on - strandat 1859.362 kb on - strandat 1859.422 kb on + strandat 1859.423 kb on - strandat 1859.423 kb on - strandat 1859.486 kb on - strandat 1859.486 kb on - strandat 1859.486 kb on - strandat 1859.486 kb on - strandat 1859.486 kb on - strandat 1859.636 kb on + strandat 1859.637 kb on - strandat 1859.726 kb on - strand, within OH686_09105at 1859.726 kb on - strand, within OH686_09105at 1859.726 kb on - strand, within OH686_09105at 1859.726 kb on - strand, within OH686_09105at 1859.726 kb on - strand, within OH686_09105at 1859.726 kb on - strand, within OH686_09105at 1859.726 kb on - strand, within OH686_09105at 1859.735 kb on - strand, within OH686_09105at 1859.857 kb on + strand, within OH686_09105at 1859.857 kb on + strand, within OH686_09105at 1859.926 kb on + strand, within OH686_09105at 1859.926 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1859.941 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.043 kb on + strand, within OH686_09105at 1860.044 kb on - strand, within OH686_09105at 1860.044 kb on - strand, within OH686_09105at 1860.044 kb on - strand, within OH686_09105at 1860.044 kb on - strand, within OH686_09105at 1860.044 kb on - strand, within OH686_09105at 1860.044 kb on - strand, within OH686_09105at 1860.358 kb on + strand, within OH686_09105at 1860.358 kb on + strand, within OH686_09105at 1860.358 kb on + strand, within OH686_09105at 1860.358 kb on + strand, within OH686_09105at 1860.358 kb on + strand, within OH686_09105

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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1,857,862 - OH686_09095 0.56 -0.8
1,857,863 + OH686_09095 0.57 -4.3
1,857,864 - OH686_09095 0.57 -2.4
1,857,864 - OH686_09095 0.57 -2.1
1,857,867 - OH686_09095 0.57 -0.8
1,857,926 + OH686_09095 0.61 -2.8
1,857,950 + OH686_09095 0.63 -1.8
1,857,951 - OH686_09095 0.63 -2.2
1,857,951 - OH686_09095 0.63 -2.4
1,858,063 - OH686_09095 0.71 -3.5
1,858,065 - OH686_09095 0.71 -1.7
1,858,189 - OH686_09095 0.80 +0.5
1,858,190 + OH686_09095 0.81 -1.9
1,858,192 + OH686_09095 0.81 -2.5
1,858,192 + OH686_09095 0.81 -2.0
1,858,231 - OH686_09095 0.84 -2.9
1,858,258 + OH686_09095 0.86 -2.8
1,858,259 - OH686_09095 0.86 -2.6
1,858,271 + OH686_09095 0.86 -0.9
1,858,272 - OH686_09095 0.87 -1.9
1,858,284 + OH686_09095 0.87 -2.2
1,858,284 + OH686_09095 0.87 -1.0
1,858,285 - OH686_09095 0.88 -0.5
1,858,297 + OH686_09095 0.88 -1.2
1,858,297 + OH686_09095 0.88 -1.9
1,858,298 - OH686_09095 0.88 -2.5
1,858,306 + OH686_09095 0.89 -2.1
1,858,330 + -1.9
1,858,330 + +1.8
1,858,330 + -1.1
1,858,396 + -1.2
1,858,459 - -1.5
1,858,477 + -0.5
1,858,526 + +0.3
1,858,638 + -0.3
1,858,654 - -0.9
1,858,715 - +0.9
1,858,751 + +0.4
1,858,763 + +1.0
1,858,763 + +0.4
1,858,764 - -0.9
1,858,791 - +0.4
1,858,794 - -0.8
1,858,800 + -0.4
1,858,800 + +1.4
1,858,801 - -0.1
1,858,821 + +0.5
1,858,821 + +0.1
1,858,821 + +0.7
1,858,857 - +0.2
1,858,857 - +1.5
1,858,922 + OH686_09100 0.15 +0.7
1,858,922 + OH686_09100 0.15 +1.0
1,858,923 - OH686_09100 0.15 -0.5
1,858,923 - OH686_09100 0.15 -0.5
1,858,939 + OH686_09100 0.18 +0.5
1,858,940 - OH686_09100 0.18 +1.5
1,858,979 + OH686_09100 0.25 +0.1
1,858,980 - OH686_09100 0.25 +0.2
1,858,993 + OH686_09100 0.28 -0.3
1,858,994 - OH686_09100 0.28 -0.0
1,859,058 - OH686_09100 0.39 +0.1
1,859,128 + OH686_09100 0.52 +0.5
1,859,128 + OH686_09100 0.52 -0.4
1,859,128 + OH686_09100 0.52 +0.2
1,859,128 + OH686_09100 0.52 +0.6
1,859,280 - OH686_09100 0.79 -0.5
1,859,280 - OH686_09100 0.79 +0.1
1,859,280 - OH686_09100 0.79 -0.4
1,859,307 + OH686_09100 0.84 -0.2
1,859,307 + OH686_09100 0.84 -0.2
1,859,308 - OH686_09100 0.84 +0.3
1,859,343 + -1.9
1,859,344 - +0.4
1,859,354 + -0.3
1,859,354 + +1.2
1,859,354 + +0.4
1,859,354 + +0.8
1,859,354 + -0.2
1,859,354 + +0.0
1,859,355 - -0.1
1,859,355 - -1.0
1,859,357 + +0.4
1,859,357 + -0.1
1,859,357 + +0.6
1,859,358 - -0.6
1,859,358 - +0.8
1,859,358 - -0.8
1,859,361 + +0.1
1,859,361 + +0.4
1,859,362 - -0.2
1,859,362 - -0.3
1,859,362 - +0.0
1,859,362 - -0.5
1,859,422 + -0.0
1,859,423 - +0.1
1,859,423 - +0.5
1,859,486 - -0.8
1,859,486 - -0.7
1,859,486 - -0.2
1,859,486 - +0.4
1,859,486 - +0.5
1,859,636 + -0.6
1,859,637 - +0.0
1,859,726 - OH686_09105 0.14 -0.3
1,859,726 - OH686_09105 0.14 -0.2
1,859,726 - OH686_09105 0.14 +0.8
1,859,726 - OH686_09105 0.14 -0.6
1,859,726 - OH686_09105 0.14 +0.4
1,859,726 - OH686_09105 0.14 -0.2
1,859,726 - OH686_09105 0.14 -0.6
1,859,735 - OH686_09105 0.15 -0.2
1,859,857 + OH686_09105 0.21 -0.2
1,859,857 + OH686_09105 0.21 -0.4
1,859,926 + OH686_09105 0.25 -0.1
1,859,926 + OH686_09105 0.25 -1.2
1,859,941 + OH686_09105 0.26 -0.5
1,859,941 + OH686_09105 0.26 +0.2
1,859,941 + OH686_09105 0.26 +0.4
1,859,941 + OH686_09105 0.26 -2.2
1,859,941 + OH686_09105 0.26 +0.3
1,859,941 + OH686_09105 0.26 +0.5
1,859,941 + OH686_09105 0.26 +0.0
1,859,941 + OH686_09105 0.26 +0.1
1,859,941 + OH686_09105 0.26 -0.7
1,859,941 + OH686_09105 0.26 +0.0
1,859,941 + OH686_09105 0.26 -0.6
1,859,941 + OH686_09105 0.26 +0.1
1,859,941 + OH686_09105 0.26 -0.2
1,859,941 + OH686_09105 0.26 +0.7
1,859,941 + OH686_09105 0.26 -0.8
1,859,941 + OH686_09105 0.26 -1.3
1,859,941 + OH686_09105 0.26 +0.7
1,859,941 + OH686_09105 0.26 -0.2
1,859,941 + OH686_09105 0.26 -1.9
1,859,941 + OH686_09105 0.26 -0.3
1,860,043 + OH686_09105 0.32 -0.1
1,860,043 + OH686_09105 0.32 +0.5
1,860,043 + OH686_09105 0.32 +1.0
1,860,043 + OH686_09105 0.32 -1.2
1,860,043 + OH686_09105 0.32 -0.7
1,860,043 + OH686_09105 0.32 +0.0
1,860,043 + OH686_09105 0.32 +0.4
1,860,043 + OH686_09105 0.32 -1.8
1,860,043 + OH686_09105 0.32 +1.6
1,860,043 + OH686_09105 0.32 -0.7
1,860,043 + OH686_09105 0.32 -0.6
1,860,044 - OH686_09105 0.32 +1.5
1,860,044 - OH686_09105 0.32 +0.5
1,860,044 - OH686_09105 0.32 -0.4
1,860,044 - OH686_09105 0.32 -0.3
1,860,044 - OH686_09105 0.32 +0.1
1,860,044 - OH686_09105 0.32 +0.3
1,860,358 + OH686_09105 0.50 -1.0
1,860,358 + OH686_09105 0.50 -0.1
1,860,358 + OH686_09105 0.50 -0.0
1,860,358 + OH686_09105 0.50 +0.8
1,860,358 + OH686_09105 0.50 -0.2

Or see this region's nucleotide sequence