Strain Fitness in Pseudomonas simiae WCS417 around PS417_20870

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20865 and PS417_20870 are separated by 87 nucleotidesPS417_20870 and PS417_20875 are separated by 259 nucleotides PS417_20865: PS417_20865 - NAD-dependent DNA ligase LigA, at 4,531,216 to 4,533,573 _20865 PS417_20870: PS417_20870 - cell division protein ZipA, at 4,533,661 to 4,534,524 _20870 PS417_20875: PS417_20875 - chromosome segregation protein SMC, at 4,534,784 to 4,538,272 _20875 Position (kb) 4533 4534 4535Strain fitness (log2 ratio) -2 -1 0 1at 4533.618 kb on - strandat 4533.618 kb on - strandat 4533.618 kb on - strandat 4533.618 kb on - strandat 4533.618 kb on - strandat 4534.590 kb on - strandat 4534.710 kb on - strandat 4535.173 kb on - strand, within PS417_20875at 4535.224 kb on + strand, within PS417_20875at 4535.225 kb on - strand, within PS417_20875at 4535.344 kb on + strand, within PS417_20875

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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4,533,618 - -0.9
4,533,618 - -0.8
4,533,618 - -0.8
4,533,618 - -0.4
4,533,618 - -1.2
4,534,590 - -0.6
4,534,710 - -0.6
4,535,173 - PS417_20875 0.11 +0.2
4,535,224 + PS417_20875 0.13 -2.6
4,535,225 - PS417_20875 0.13 +0.6
4,535,344 + PS417_20875 0.16 -0.7

Or see this region's nucleotide sequence