Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16915

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16910 and ABIE41_RS16915 are separated by 207 nucleotidesABIE41_RS16915 and ABIE41_RS16920 are separated by 114 nucleotidesABIE41_RS16920 and ABIE41_RS16925 are separated by 3 nucleotides ABIE41_RS16910: ABIE41_RS16910 - DNA topoisomerase IV subunit B, at 3,483,815 to 3,485,872 _RS16910 ABIE41_RS16915: ABIE41_RS16915 - LysR family transcriptional regulator, at 3,486,080 to 3,487,000 _RS16915 ABIE41_RS16920: ABIE41_RS16920 - hypothetical protein, at 3,487,115 to 3,487,372 _RS16920 ABIE41_RS16925: ABIE41_RS16925 - alpha/beta hydrolase, at 3,487,376 to 3,488,071 _RS16925 Position (kb) 3486 3487 3488Strain fitness (log2 ratio) -2 -1 0 1 2at 3486.147 kb on - strandat 3486.588 kb on - strand, within ABIE41_RS16915at 3486.623 kb on + strand, within ABIE41_RS16915at 3486.623 kb on + strand, within ABIE41_RS16915at 3486.623 kb on + strand, within ABIE41_RS16915at 3486.624 kb on - strand, within ABIE41_RS16915at 3486.624 kb on - strand, within ABIE41_RS16915at 3486.624 kb on - strand, within ABIE41_RS16915at 3486.624 kb on - strand, within ABIE41_RS16915at 3486.928 kb on - strandat 3487.872 kb on + strand, within ABIE41_RS16925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,486,147 - -0.9
3,486,588 - ABIE41_RS16915 0.55 +2.4
3,486,623 + ABIE41_RS16915 0.59 +0.0
3,486,623 + ABIE41_RS16915 0.59 -0.2
3,486,623 + ABIE41_RS16915 0.59 -0.7
3,486,624 - ABIE41_RS16915 0.59 +0.5
3,486,624 - ABIE41_RS16915 0.59 -2.6
3,486,624 - ABIE41_RS16915 0.59 +0.6
3,486,624 - ABIE41_RS16915 0.59 +0.2
3,486,928 - -0.1
3,487,872 + ABIE41_RS16925 0.71 -1.4

Or see this region's nucleotide sequence