Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01355 and ABIE41_RS01360 are separated by 248 nucleotides ABIE41_RS01360 and ABIE41_RS01365 are separated by 19 nucleotides ABIE41_RS01365 and ABIE41_RS01370 are separated by 5 nucleotides
ABIE41_RS01355: ABIE41_RS01355 - aldolase/citrate lyase family protein, at 267,915 to 268,712
_RS01355
ABIE41_RS01360: ABIE41_RS01360 - sialic acid TRAP transporter substrate-binding protein SiaP, at 268,961 to 269,935
_RS01360
ABIE41_RS01365: ABIE41_RS01365 - TRAP transporter small permease, at 269,955 to 270,530
_RS01365
ABIE41_RS01370: ABIE41_RS01370 - TRAP transporter large permease, at 270,536 to 271,930
_RS01370
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 268.138 kb on + strand, within ABIE41_RS01355 at 268.487 kb on - strand, within ABIE41_RS01355 at 268.825 kb on + strand at 268.826 kb on - strand at 268.826 kb on - strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.051 kb on + strand at 269.052 kb on - strand at 269.052 kb on - strand at 269.057 kb on + strand at 269.058 kb on - strand at 269.132 kb on + strand, within ABIE41_RS01360 at 269.133 kb on - strand, within ABIE41_RS01360 at 269.133 kb on - strand, within ABIE41_RS01360 at 269.147 kb on + strand, within ABIE41_RS01360 at 269.147 kb on + strand, within ABIE41_RS01360 at 269.148 kb on - strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.270 kb on + strand, within ABIE41_RS01360 at 269.271 kb on - strand, within ABIE41_RS01360 at 269.271 kb on - strand, within ABIE41_RS01360 at 269.271 kb on - strand, within ABIE41_RS01360 at 269.312 kb on + strand, within ABIE41_RS01360 at 269.313 kb on - strand, within ABIE41_RS01360 at 269.331 kb on - strand, within ABIE41_RS01360 at 269.331 kb on - strand, within ABIE41_RS01360 at 269.331 kb on - strand, within ABIE41_RS01360 at 269.351 kb on + strand, within ABIE41_RS01360 at 269.352 kb on - strand, within ABIE41_RS01360 at 269.390 kb on + strand, within ABIE41_RS01360 at 269.390 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.483 kb on + strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.484 kb on - strand, within ABIE41_RS01360 at 269.485 kb on + strand, within ABIE41_RS01360 at 269.485 kb on + strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.486 kb on - strand, within ABIE41_RS01360 at 269.543 kb on + strand, within ABIE41_RS01360 at 269.544 kb on - strand, within ABIE41_RS01360 at 269.830 kb on + strand, within ABIE41_RS01360 at 269.831 kb on - strand, within ABIE41_RS01360 at 269.950 kb on + strand at 269.950 kb on + strand at 269.950 kb on + strand at 269.950 kb on + strand at 269.950 kb on + strand at 269.951 kb on - strand at 269.951 kb on - strand at 269.951 kb on - strand at 269.951 kb on - strand at 270.048 kb on + strand, within ABIE41_RS01365 at 270.049 kb on - strand, within ABIE41_RS01365 at 270.049 kb on - strand, within ABIE41_RS01365 at 270.126 kb on + strand, within ABIE41_RS01365 at 270.126 kb on + strand, within ABIE41_RS01365 at 270.126 kb on + strand, within ABIE41_RS01365 at 270.127 kb on - strand, within ABIE41_RS01365 at 270.127 kb on - strand, within ABIE41_RS01365 at 270.127 kb on - strand, within ABIE41_RS01365 at 270.171 kb on + strand, within ABIE41_RS01365 at 270.172 kb on - strand, within ABIE41_RS01365 at 270.230 kb on + strand, within ABIE41_RS01365 at 270.230 kb on + strand, within ABIE41_RS01365 at 270.230 kb on + strand, within ABIE41_RS01365 at 270.231 kb on - strand, within ABIE41_RS01365 at 270.249 kb on + strand, within ABIE41_RS01365 at 270.250 kb on - strand, within ABIE41_RS01365 at 270.318 kb on + strand, within ABIE41_RS01365 at 270.324 kb on + strand, within ABIE41_RS01365 at 270.408 kb on + strand, within ABIE41_RS01365 at 270.408 kb on + strand, within ABIE41_RS01365 at 270.408 kb on + strand, within ABIE41_RS01365 at 270.408 kb on + strand, within ABIE41_RS01365 at 270.408 kb on + strand, within ABIE41_RS01365 at 270.409 kb on - strand, within ABIE41_RS01365 at 270.409 kb on - strand, within ABIE41_RS01365 at 270.409 kb on - strand, within ABIE41_RS01365 at 270.409 kb on - strand, within ABIE41_RS01365 at 270.486 kb on + strand at 270.486 kb on + strand at 270.486 kb on + strand at 270.487 kb on - strand at 270.617 kb on + strand at 270.617 kb on + strand at 270.618 kb on - strand at 270.618 kb on - strand at 270.761 kb on + strand, within ABIE41_RS01370 at 270.762 kb on - strand, within ABIE41_RS01370 at 270.762 kb on - strand, within ABIE41_RS01370 at 270.917 kb on + strand, within ABIE41_RS01370 at 270.918 kb on - strand, within ABIE41_RS01370
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 268,138 + ABIE41_RS01355 0.28 -0.5 268,487 - ABIE41_RS01355 0.72 +1.0 268,825 + +1.0 268,826 - +0.1 268,826 - +0.3 269,051 + +0.9 269,051 + +0.1 269,051 + +0.0 269,051 + -0.1 269,051 + +0.3 269,052 - -1.0 269,052 - -0.5 269,057 + +0.6 269,058 - +1.8 269,132 + ABIE41_RS01360 0.18 +1.5 269,133 - ABIE41_RS01360 0.18 -0.5 269,133 - ABIE41_RS01360 0.18 +0.4 269,147 + ABIE41_RS01360 0.19 +0.5 269,147 + ABIE41_RS01360 0.19 +0.9 269,148 - ABIE41_RS01360 0.19 +0.8 269,270 + ABIE41_RS01360 0.32 +0.8 269,270 + ABIE41_RS01360 0.32 +0.3 269,270 + ABIE41_RS01360 0.32 +1.8 269,270 + ABIE41_RS01360 0.32 -0.4 269,271 - ABIE41_RS01360 0.32 +0.0 269,271 - ABIE41_RS01360 0.32 -1.6 269,271 - ABIE41_RS01360 0.32 +0.4 269,312 + ABIE41_RS01360 0.36 +0.1 269,313 - ABIE41_RS01360 0.36 +0.5 269,331 - ABIE41_RS01360 0.38 +0.2 269,331 - ABIE41_RS01360 0.38 +0.2 269,331 - ABIE41_RS01360 0.38 +0.0 269,351 + ABIE41_RS01360 0.40 -0.4 269,352 - ABIE41_RS01360 0.40 +2.6 269,390 + ABIE41_RS01360 0.44 -3.1 269,390 + ABIE41_RS01360 0.44 -1.0 269,483 + ABIE41_RS01360 0.54 +0.1 269,483 + ABIE41_RS01360 0.54 -0.7 269,483 + ABIE41_RS01360 0.54 -0.5 269,483 + ABIE41_RS01360 0.54 +1.1 269,483 + ABIE41_RS01360 0.54 +0.6 269,483 + ABIE41_RS01360 0.54 -0.9 269,484 - ABIE41_RS01360 0.54 +1.2 269,484 - ABIE41_RS01360 0.54 +0.7 269,484 - ABIE41_RS01360 0.54 -0.1 269,484 - ABIE41_RS01360 0.54 -0.5 269,485 + ABIE41_RS01360 0.54 +0.2 269,485 + ABIE41_RS01360 0.54 +0.8 269,486 - ABIE41_RS01360 0.54 +1.4 269,486 - ABIE41_RS01360 0.54 -0.5 269,486 - ABIE41_RS01360 0.54 -1.2 269,486 - ABIE41_RS01360 0.54 +0.5 269,543 + ABIE41_RS01360 0.60 +0.7 269,544 - ABIE41_RS01360 0.60 -1.3 269,830 + ABIE41_RS01360 0.89 +0.1 269,831 - ABIE41_RS01360 0.89 +0.5 269,950 + -0.5 269,950 + -0.0 269,950 + +0.1 269,950 + -0.9 269,950 + -1.2 269,951 - +0.1 269,951 - -0.7 269,951 - -0.5 269,951 - +0.2 270,048 + ABIE41_RS01365 0.16 -0.3 270,049 - ABIE41_RS01365 0.16 +0.0 270,049 - ABIE41_RS01365 0.16 -0.8 270,126 + ABIE41_RS01365 0.30 +0.3 270,126 + ABIE41_RS01365 0.30 -0.1 270,126 + ABIE41_RS01365 0.30 +3.0 270,127 - ABIE41_RS01365 0.30 +0.5 270,127 - ABIE41_RS01365 0.30 -2.1 270,127 - ABIE41_RS01365 0.30 -2.0 270,171 + ABIE41_RS01365 0.38 -2.5 270,172 - ABIE41_RS01365 0.38 -2.1 270,230 + ABIE41_RS01365 0.48 -0.3 270,230 + ABIE41_RS01365 0.48 -0.4 270,230 + ABIE41_RS01365 0.48 -0.9 270,231 - ABIE41_RS01365 0.48 -0.1 270,249 + ABIE41_RS01365 0.51 +1.6 270,250 - ABIE41_RS01365 0.51 +1.2 270,318 + ABIE41_RS01365 0.63 +0.2 270,324 + ABIE41_RS01365 0.64 -0.1 270,408 + ABIE41_RS01365 0.79 -2.2 270,408 + ABIE41_RS01365 0.79 -0.3 270,408 + ABIE41_RS01365 0.79 -0.4 270,408 + ABIE41_RS01365 0.79 +1.9 270,408 + ABIE41_RS01365 0.79 +0.2 270,409 - ABIE41_RS01365 0.79 +0.1 270,409 - ABIE41_RS01365 0.79 +0.0 270,409 - ABIE41_RS01365 0.79 -0.3 270,409 - ABIE41_RS01365 0.79 +1.7 270,486 + -0.6 270,486 + -0.8 270,486 + -0.6 270,487 - +0.0 270,617 + +1.6 270,617 + +1.3 270,618 - -0.2 270,618 - -0.4 270,761 + ABIE41_RS01370 0.16 +0.3 270,762 - ABIE41_RS01370 0.16 -1.7 270,762 - ABIE41_RS01370 0.16 +1.4 270,917 + ABIE41_RS01370 0.27 +0.6 270,918 - ABIE41_RS01370 0.27 +1.8
Or see this region's nucleotide sequence