Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19950

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19945 and ABID97_RS19950 are separated by 2 nucleotidesABID97_RS19950 and ABID97_RS19955 overlap by 1 nucleotides ABID97_RS19945: ABID97_RS19945 - ABC transporter ATP-binding protein, at 4,116,983 to 4,118,053 _RS19945 ABID97_RS19950: ABID97_RS19950 - ABC transporter ATP-binding protein, at 4,118,056 to 4,119,129 _RS19950 ABID97_RS19955: ABID97_RS19955 - glycerol-3-phosphate dehydrogenase, at 4,119,129 to 4,120,733 _RS19955 Position (kb) 4118 4119 4120Strain fitness (log2 ratio) -2 -1 0 1at 4117.206 kb on + strand, within ABID97_RS19945at 4117.990 kb on - strandat 4117.990 kb on - strandat 4118.053 kb on + strandat 4118.053 kb on + strandat 4118.054 kb on - strandat 4118.057 kb on + strandat 4118.115 kb on - strandat 4118.115 kb on - strandat 4118.115 kb on - strandat 4118.136 kb on - strandat 4118.136 kb on - strandat 4118.136 kb on - strandat 4118.136 kb on - strandat 4118.495 kb on + strand, within ABID97_RS19950at 4118.642 kb on + strand, within ABID97_RS19950at 4118.643 kb on - strand, within ABID97_RS19950at 4118.873 kb on + strand, within ABID97_RS19950at 4118.892 kb on - strand, within ABID97_RS19950at 4119.075 kb on - strandat 4119.677 kb on - strand, within ABID97_RS19955at 4119.740 kb on - strand, within ABID97_RS19955

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,117,206 + ABID97_RS19945 0.21 -0.1
4,117,990 - +0.6
4,117,990 - +0.3
4,118,053 + -0.4
4,118,053 + -1.2
4,118,054 - -0.2
4,118,057 + -0.3
4,118,115 - +0.0
4,118,115 - -0.4
4,118,115 - +0.1
4,118,136 - -0.6
4,118,136 - -0.6
4,118,136 - +0.0
4,118,136 - -2.4
4,118,495 + ABID97_RS19950 0.41 -1.6
4,118,642 + ABID97_RS19950 0.55 -0.3
4,118,643 - ABID97_RS19950 0.55 +0.2
4,118,873 + ABID97_RS19950 0.76 -0.8
4,118,892 - ABID97_RS19950 0.78 -0.5
4,119,075 - +1.3
4,119,677 - ABID97_RS19955 0.34 +0.6
4,119,740 - ABID97_RS19955 0.38 -0.0

Or see this region's nucleotide sequence