Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19945 and ABID97_RS19950 are separated by 2 nucleotides ABID97_RS19950 and ABID97_RS19955 overlap by 1 nucleotides
ABID97_RS19945: ABID97_RS19945 - ABC transporter ATP-binding protein, at 4,116,983 to 4,118,053
_RS19945
ABID97_RS19950: ABID97_RS19950 - ABC transporter ATP-binding protein, at 4,118,056 to 4,119,129
_RS19950
ABID97_RS19955: ABID97_RS19955 - glycerol-3-phosphate dehydrogenase, at 4,119,129 to 4,120,733
_RS19955
Position (kb)
4118
4119
4120 Strain fitness (log2 ratio)
-2
-1
0
1 at 4117.206 kb on + strand, within ABID97_RS19945 at 4117.990 kb on - strand at 4117.990 kb on - strand at 4118.053 kb on + strand at 4118.053 kb on + strand at 4118.054 kb on - strand at 4118.057 kb on + strand at 4118.115 kb on - strand at 4118.115 kb on - strand at 4118.115 kb on - strand at 4118.136 kb on - strand at 4118.136 kb on - strand at 4118.136 kb on - strand at 4118.136 kb on - strand at 4118.495 kb on + strand, within ABID97_RS19950 at 4118.642 kb on + strand, within ABID97_RS19950 at 4118.643 kb on - strand, within ABID97_RS19950 at 4118.873 kb on + strand, within ABID97_RS19950 at 4118.892 kb on - strand, within ABID97_RS19950 at 4119.075 kb on - strand at 4119.677 kb on - strand, within ABID97_RS19955 at 4119.740 kb on - strand, within ABID97_RS19955
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 4,117,206 + ABID97_RS19945 0.21 -0.1 4,117,990 - +0.6 4,117,990 - +0.3 4,118,053 + -0.4 4,118,053 + -1.2 4,118,054 - -0.2 4,118,057 + -0.3 4,118,115 - +0.0 4,118,115 - -0.4 4,118,115 - +0.1 4,118,136 - -0.6 4,118,136 - -0.6 4,118,136 - +0.0 4,118,136 - -2.4 4,118,495 + ABID97_RS19950 0.41 -1.6 4,118,642 + ABID97_RS19950 0.55 -0.3 4,118,643 - ABID97_RS19950 0.55 +0.2 4,118,873 + ABID97_RS19950 0.76 -0.8 4,118,892 - ABID97_RS19950 0.78 -0.5 4,119,075 - +1.3 4,119,677 - ABID97_RS19955 0.34 +0.6 4,119,740 - ABID97_RS19955 0.38 -0.0
Or see this region's nucleotide sequence