Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18310

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18300 and ABID97_RS18305 are separated by 53 nucleotidesABID97_RS18305 and ABID97_RS18310 are separated by 126 nucleotidesABID97_RS18310 and ABID97_RS18315 are separated by 490 nucleotides ABID97_RS18300: ABID97_RS18300 - hypothetical protein, at 3,785,603 to 3,785,974 _RS18300 ABID97_RS18305: ABID97_RS18305 - hypothetical protein, at 3,786,028 to 3,786,564 _RS18305 ABID97_RS18310: ABID97_RS18310 - hypothetical protein, at 3,786,691 to 3,787,437 _RS18310 ABID97_RS18315: ABID97_RS18315 - H-NS histone family protein, at 3,787,928 to 3,788,281 _RS18315 Position (kb) 3786 3787 3788Strain fitness (log2 ratio) -1 0 1at 3785.853 kb on - strand, within ABID97_RS18300at 3785.882 kb on + strand, within ABID97_RS18300at 3785.882 kb on + strand, within ABID97_RS18300at 3785.882 kb on + strand, within ABID97_RS18300at 3785.882 kb on + strand, within ABID97_RS18300at 3785.883 kb on - strand, within ABID97_RS18300at 3786.091 kb on + strand, within ABID97_RS18305at 3786.167 kb on - strand, within ABID97_RS18305at 3786.302 kb on + strand, within ABID97_RS18305at 3786.303 kb on - strand, within ABID97_RS18305at 3786.352 kb on + strand, within ABID97_RS18305at 3786.353 kb on - strand, within ABID97_RS18305at 3786.395 kb on - strand, within ABID97_RS18305at 3786.449 kb on - strand, within ABID97_RS18305at 3786.529 kb on - strandat 3786.599 kb on - strandat 3786.803 kb on - strand, within ABID97_RS18310at 3786.955 kb on + strand, within ABID97_RS18310at 3786.956 kb on - strand, within ABID97_RS18310at 3787.394 kb on + strandat 3787.491 kb on + strandat 3787.525 kb on + strandat 3787.525 kb on + strandat 3787.526 kb on - strandat 3787.822 kb on - strandat 3787.853 kb on - strandat 3787.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,785,853 - ABID97_RS18300 0.67 +0.0
3,785,882 + ABID97_RS18300 0.75 -0.3
3,785,882 + ABID97_RS18300 0.75 +0.1
3,785,882 + ABID97_RS18300 0.75 -0.2
3,785,882 + ABID97_RS18300 0.75 +0.0
3,785,883 - ABID97_RS18300 0.75 -0.7
3,786,091 + ABID97_RS18305 0.12 -0.5
3,786,167 - ABID97_RS18305 0.26 -0.3
3,786,302 + ABID97_RS18305 0.51 -0.2
3,786,303 - ABID97_RS18305 0.51 +1.5
3,786,352 + ABID97_RS18305 0.60 +0.1
3,786,353 - ABID97_RS18305 0.61 -0.3
3,786,395 - ABID97_RS18305 0.68 +0.0
3,786,449 - ABID97_RS18305 0.78 -0.7
3,786,529 - +1.5
3,786,599 - -0.1
3,786,803 - ABID97_RS18310 0.15 -0.4
3,786,955 + ABID97_RS18310 0.35 -0.9
3,786,956 - ABID97_RS18310 0.35 -0.9
3,787,394 + -0.3
3,787,491 + +1.5
3,787,525 + -0.2
3,787,525 + -1.5
3,787,526 - -0.5
3,787,822 - +0.6
3,787,853 - +0.1
3,787,930 - -0.8

Or see this region's nucleotide sequence